Dataset,RunID,Rank,Pattern,Sig,Seq,Start_Pos,End_Pos,Prot_Len,Match,Variant,MisMatch,Desc,PepSeq,PepDesign slimfinder,15120800001,1,Q..[IL].SFF,3.42e-12,RRM3_YEAST__P38766,35,42,723,QQTLSSFF,Q..[IL].SFF,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,QQTLSSFF,OK slimfinder,15120800001,1,Q..[IL].SFF,3.42e-12,UNG_HUMAN__P13051,4,11,313,QKTLYSFF,Q..[IL].SFF,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,QKTLYSFF,OK slimfinder,15120800001,1,Q..[IL].SFF,3.42e-12,DPOD3_SCHPO__P30261,362,369,372,QKSIMSFF,Q..[IL].SFF,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=Cell division control protein 27;,QKSIMSFF,OK slimfinder,15120800001,1,Q..[IL].SFF,3.42e-12,DPOD3_YEAST__P47110,338,345,350,QGTLESFF,Q..[IL].SFF,0,RecName: Full=DNA polymerase delta subunit 3;,QGTLESFF,OK slimfinder,15120800001,1,Q..[IL].SFF,3.42e-12,MSH6_YEAST__Q03834,27,34,1242,QSSLLSFF,Q..[IL].SFF,0,RecName: Full=DNA mismatch repair protein MSH6; AltName: Full=MutS protein homolog 6; AltName: Full=Postmeiotic segregation protein 3;,QSSLLSFF,OK slimfinder,15120800001,1,Q..[IL].SFF,3.42e-12,MSH6_HUMAN__P52701,4,11,1360,QSTLYSFF,Q..[IL].SFF,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,QSTLYSFF,OK slimfinder,15120800001,1,Q..[IL].SFF,3.42e-12,DNLI1_HUMAN__P18858,2,9,919,QRSIMSFF,Q..[IL].SFF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,QRSIMSFF,OK slimfinder,15120800001,2,Q.[ST]..SFF,2.87e-11,RRM3_YEAST__P38766,35,42,723,QQTLSSFF,Q.[ST]..SFF,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,QQTLSSFF,OK slimfinder,15120800001,2,Q.[ST]..SFF,2.87e-11,UNG_HUMAN__P13051,4,11,313,QKTLYSFF,Q.[ST]..SFF,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,QKTLYSFF,OK slimfinder,15120800001,2,Q.[ST]..SFF,2.87e-11,DPOD3_SCHPO__P30261,362,369,372,QKSIMSFF,Q.[ST]..SFF,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=Cell division control protein 27;,QKSIMSFF,OK slimfinder,15120800001,2,Q.[ST]..SFF,2.87e-11,DPOD3_YEAST__P47110,338,345,350,QGTLESFF,Q.[ST]..SFF,0,RecName: Full=DNA polymerase delta subunit 3;,QGTLESFF,OK slimfinder,15120800001,2,Q.[ST]..SFF,2.87e-11,MSH6_HUMAN__P52701,4,11,1360,QSTLYSFF,Q.[ST]..SFF,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,QSTLYSFF,OK slimfinder,15120800001,2,Q.[ST]..SFF,2.87e-11,MSH6_YEAST__Q03834,27,34,1242,QSSLLSFF,Q.[ST]..SFF,0,RecName: Full=DNA mismatch repair protein MSH6; AltName: Full=MutS protein homolog 6; AltName: Full=Postmeiotic segregation protein 3;,QSSLLSFF,OK slimfinder,15120800001,2,Q.[ST]..SFF,2.87e-11,DNLI1_HUMAN__P18858,2,9,919,QRSIMSFF,Q.[ST]..SFF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,QRSIMSFF,OK slimfinder,15120800001,3,Q.[ST][IL]..FF,6.06e-11,DPOD3_HUMAN__Q15054,456,463,466,QVSITGFF,Q.[ST][IL]..FF,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=DNA polymerase delta subunit p66;,QVSITGFF,OK slimfinder,15120800001,3,Q.[ST][IL]..FF,6.06e-11,MSH3_YEAST__P25336,4,11,1018,QPTISRFF,Q.[ST][IL]..FF,0,RecName: Full=DNA mismatch repair protein MSH3; AltName: Full=Mismatch-binding protein; Short=MBP; AltName: Full=MutS protein homolog 3;,QPTISRFF,OK slimfinder,15120800001,3,Q.[ST][IL]..FF,6.06e-11,DPOD3_SCHPO__P30261,362,369,372,QKSIMSFF,Q.[ST][IL]..FF,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=Cell division control protein 27;,QKSIMSFF,OK slimfinder,15120800001,3,Q.[ST][IL]..FF,6.06e-11,RRM3_YEAST__P38766,35,42,723,QQTLSSFF,Q.[ST][IL]..FF,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,QQTLSSFF,OK slimfinder,15120800001,3,Q.[ST][IL]..FF,6.06e-11,UNG_HUMAN__P13051,4,11,313,QKTLYSFF,Q.[ST][IL]..FF,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,QKTLYSFF,OK slimfinder,15120800001,3,Q.[ST][IL]..FF,6.06e-11,DNLI1_YEAST__P04819,38,45,755,QATLARFF,Q.[ST][IL]..FF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1; Flags: Precursor;,QATLARFF,OK slimfinder,15120800001,3,Q.[ST][IL]..FF,6.06e-11,DPOD3_YEAST__P47110,338,345,350,QGTLESFF,Q.[ST][IL]..FF,0,RecName: Full=DNA polymerase delta subunit 3;,QGTLESFF,OK slimfinder,15120800001,3,Q.[ST][IL]..FF,6.06e-11,MSH6_HUMAN__P52701,4,11,1360,QSTLYSFF,Q.[ST][IL]..FF,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,QSTLYSFF,OK slimfinder,15120800001,3,Q.[ST][IL]..FF,6.06e-11,UNG_YEAST__P12887,21,28,359,QTTIEDFF,Q.[ST][IL]..FF,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166}; Flags: Precursor;,QTTIEDFF,OK slimfinder,15120800001,3,Q.[ST][IL]..FF,6.06e-11,DNLI1_HUMAN__P18858,2,9,919,QRSIMSFF,Q.[ST][IL]..FF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,QRSIMSFF,OK slimfinder,15120800001,4,Q.TL..FF,2.64e-10,DNLI1_YEAST__P04819,38,45,755,QATLARFF,Q.TL..FF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1; Flags: Precursor;,QATLARFF,OK slimfinder,15120800001,4,Q.TL..FF,2.64e-10,DPOD3_YEAST__P47110,338,345,350,QGTLESFF,Q.TL..FF,0,RecName: Full=DNA polymerase delta subunit 3;,QGTLESFF,OK slimfinder,15120800001,4,Q.TL..FF,2.64e-10,RRM3_YEAST__P38766,35,42,723,QQTLSSFF,Q.TL..FF,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,QQTLSSFF,OK slimfinder,15120800001,4,Q.TL..FF,2.64e-10,MSH6_HUMAN__P52701,4,11,1360,QSTLYSFF,Q.TL..FF,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,QSTLYSFF,OK slimfinder,15120800001,4,Q.TL..FF,2.64e-10,UNG_HUMAN__P13051,4,11,313,QKTLYSFF,Q.TL..FF,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,QKTLYSFF,OK slimfinder,15120800001,5,Q..L..FF,8.15e-09,DNLI1_YEAST__P04819,38,45,755,QATLARFF,Q..L..FF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1; Flags: Precursor;,QATLARFF,OK slimfinder,15120800001,5,Q..L..FF,8.15e-09,FEN1_YEAST__P26793,340,347,382,QGRLDGFF,Q..L..FF,0,RecName: Full=Flap endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; Short=FEN-1 {ECO:0000255|HAMAP-Rule:MF_03140}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=Flap structure-specific endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=RAD2 homolog nuclease 1; Short=RTH1 nuclease; AltName: Full=Structure-specific endonuclease RAD27;,QGRLDGFF,Warning: DG slimfinder,15120800001,5,Q..L..FF,8.15e-09,FEN1_HUMAN__P39748,337,344,380,QGRLDDFF,Q..L..FF,0,RecName: Full=Flap endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; Short=FEN-1 {ECO:0000255|HAMAP-Rule:MF_03140}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=DNase IV; AltName: Full=Flap structure-specific endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=Maturation factor 1; Short=MF1; Short=hFEN-1;,QGRLDDFF,OK slimfinder,15120800001,5,Q..L..FF,8.15e-09,RRM3_YEAST__P38766,35,42,723,QQTLSSFF,Q..L..FF,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,QQTLSSFF,OK slimfinder,15120800001,5,Q..L..FF,8.15e-09,UNG_HUMAN__P13051,4,11,313,QKTLYSFF,Q..L..FF,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,QKTLYSFF,OK slimfinder,15120800001,5,Q..L..FF,8.15e-09,DPOD3_YEAST__P47110,338,345,350,QGTLESFF,Q..L..FF,0,RecName: Full=DNA polymerase delta subunit 3;,QGTLESFF,OK slimfinder,15120800001,5,Q..L..FF,8.15e-09,MSH6_HUMAN__P52701,4,11,1360,QSTLYSFF,Q..L..FF,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,QSTLYSFF,OK slimfinder,15120800001,5,Q..L..FF,8.15e-09,MSH6_YEAST__Q03834,27,34,1242,QSSLLSFF,Q..L..FF,0,RecName: Full=DNA mismatch repair protein MSH6; AltName: Full=MutS protein homolog 6; AltName: Full=Postmeiotic segregation protein 3;,QSSLLSFF,OK slimfinder,15120800001,6,[ST][IL].SFF,1.11e-08,RRM3_YEAST__P38766,37,42,723,TLSSFF,[ST][IL].SFF,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,TLSSFF,OK slimfinder,15120800001,6,[ST][IL].SFF,1.11e-08,UNG_HUMAN__P13051,6,11,313,TLYSFF,[ST][IL].SFF,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,TLYSFF,OK slimfinder,15120800001,6,[ST][IL].SFF,1.11e-08,DPOD3_SCHPO__P30261,364,369,372,SIMSFF,[ST][IL].SFF,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=Cell division control protein 27;,SIMSFF,OK slimfinder,15120800001,6,[ST][IL].SFF,1.11e-08,DPOD3_YEAST__P47110,340,345,350,TLESFF,[ST][IL].SFF,0,RecName: Full=DNA polymerase delta subunit 3;,TLESFF,OK slimfinder,15120800001,6,[ST][IL].SFF,1.11e-08,MSH6_HUMAN__P52701,6,11,1360,TLYSFF,[ST][IL].SFF,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,TLYSFF,OK slimfinder,15120800001,6,[ST][IL].SFF,1.11e-08,DNLI1_HUMAN__P18858,4,9,919,SIMSFF,[ST][IL].SFF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,SIMSFF,OK slimfinder,15120800001,6,[ST][IL].SFF,1.11e-08,DNLI1_HUMAN__P18858,227,232,919,TLSSFF,[ST][IL].SFF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,TLSSFF,OK slimfinder,15120800001,7,TL.SFF,1.85e-08,DNLI1_HUMAN__P18858,227,232,919,TLSSFF,TL.SFF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,TLSSFF,OK slimfinder,15120800001,7,TL.SFF,1.85e-08,DPOD3_YEAST__P47110,340,345,350,TLESFF,TL.SFF,0,RecName: Full=DNA polymerase delta subunit 3;,TLESFF,OK slimfinder,15120800001,7,TL.SFF,1.85e-08,RRM3_YEAST__P38766,37,42,723,TLSSFF,TL.SFF,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,TLSSFF,OK slimfinder,15120800001,7,TL.SFF,1.85e-08,MSH6_HUMAN__P52701,6,11,1360,TLYSFF,TL.SFF,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,TLYSFF,OK slimfinder,15120800001,7,TL.SFF,1.85e-08,UNG_HUMAN__P13051,6,11,313,TLYSFF,TL.SFF,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,TLYSFF,OK slimfinder,15120800001,8,Q.[ST][IL].S.F,3.76e-08,RRM3_YEAST__P38766,35,42,723,QQTLSSFF,Q.[ST][IL].S.F,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,QQTLSSFF,OK slimfinder,15120800001,8,Q.[ST][IL].S.F,3.76e-08,UNG_HUMAN__P13051,4,11,313,QKTLYSFF,Q.[ST][IL].S.F,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,QKTLYSFF,OK slimfinder,15120800001,8,Q.[ST][IL].S.F,3.76e-08,DPOD3_SCHPO__P30261,362,369,372,QKSIMSFF,Q.[ST][IL].S.F,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=Cell division control protein 27;,QKSIMSFF,OK slimfinder,15120800001,8,Q.[ST][IL].S.F,3.76e-08,DPOD3_YEAST__P47110,338,345,350,QGTLESFF,Q.[ST][IL].S.F,0,RecName: Full=DNA polymerase delta subunit 3;,QGTLESFF,OK slimfinder,15120800001,8,Q.[ST][IL].S.F,3.76e-08,MSH6_HUMAN__P52701,4,11,1360,QSTLYSFF,Q.[ST][IL].S.F,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,QSTLYSFF,OK slimfinder,15120800001,8,Q.[ST][IL].S.F,3.76e-08,DNLI1_HUMAN__P18858,2,9,919,QRSIMSFF,Q.[ST][IL].S.F,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,QRSIMSFF,OK slimfinder,15120800001,9,Q.[ST][IL].SF,4.40e-08,RRM3_YEAST__P38766,35,41,723,QQTLSSF,Q.[ST][IL].SF,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,QQTLSSF,OK slimfinder,15120800001,9,Q.[ST][IL].SF,4.40e-08,UNG_HUMAN__P13051,4,10,313,QKTLYSF,Q.[ST][IL].SF,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,QKTLYSF,OK slimfinder,15120800001,9,Q.[ST][IL].SF,4.40e-08,DPOD3_SCHPO__P30261,362,368,372,QKSIMSF,Q.[ST][IL].SF,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=Cell division control protein 27;,QKSIMSF,OK slimfinder,15120800001,9,Q.[ST][IL].SF,4.40e-08,DPOD3_YEAST__P47110,338,344,350,QGTLESF,Q.[ST][IL].SF,0,RecName: Full=DNA polymerase delta subunit 3;,QGTLESF,OK slimfinder,15120800001,9,Q.[ST][IL].SF,4.40e-08,MSH6_HUMAN__P52701,4,10,1360,QSTLYSF,Q.[ST][IL].SF,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,QSTLYSF,OK slimfinder,15120800001,9,Q.[ST][IL].SF,4.40e-08,DNLI1_HUMAN__P18858,2,8,919,QRSIMSF,Q.[ST][IL].SF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,QRSIMSF,OK slimfinder,15120800001,10,Q..[IL]..FF,9.98e-08,DPOD3_HUMAN__Q15054,456,463,466,QVSITGFF,Q..[IL]..FF,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=DNA polymerase delta subunit p66;,QVSITGFF,OK slimfinder,15120800001,10,Q..[IL]..FF,9.98e-08,MSH3_YEAST__P25336,4,11,1018,QPTISRFF,Q..[IL]..FF,0,RecName: Full=DNA mismatch repair protein MSH3; AltName: Full=Mismatch-binding protein; Short=MBP; AltName: Full=MutS protein homolog 3;,QPTISRFF,OK slimfinder,15120800001,10,Q..[IL]..FF,9.98e-08,UNG_HUMAN__P13051,4,11,313,QKTLYSFF,Q..[IL]..FF,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,QKTLYSFF,OK slimfinder,15120800001,10,Q..[IL]..FF,9.98e-08,FEN1_YEAST__P26793,340,347,382,QGRLDGFF,Q..[IL]..FF,0,RecName: Full=Flap endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; Short=FEN-1 {ECO:0000255|HAMAP-Rule:MF_03140}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=Flap structure-specific endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=RAD2 homolog nuclease 1; Short=RTH1 nuclease; AltName: Full=Structure-specific endonuclease RAD27;,QGRLDGFF,Warning: DG slimfinder,15120800001,10,Q..[IL]..FF,9.98e-08,DPOD3_SCHPO__P30261,362,369,372,QKSIMSFF,Q..[IL]..FF,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=Cell division control protein 27;,QKSIMSFF,OK slimfinder,15120800001,10,Q..[IL]..FF,9.98e-08,RRM3_YEAST__P38766,35,42,723,QQTLSSFF,Q..[IL]..FF,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,QQTLSSFF,OK slimfinder,15120800001,10,Q..[IL]..FF,9.98e-08,FEN1_HUMAN__P39748,337,344,380,QGRLDDFF,Q..[IL]..FF,0,RecName: Full=Flap endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; Short=FEN-1 {ECO:0000255|HAMAP-Rule:MF_03140}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=DNase IV; AltName: Full=Flap structure-specific endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=Maturation factor 1; Short=MF1; Short=hFEN-1;,QGRLDDFF,OK slimfinder,15120800001,10,Q..[IL]..FF,9.98e-08,DNLI1_YEAST__P04819,38,45,755,QATLARFF,Q..[IL]..FF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1; Flags: Precursor;,QATLARFF,OK slimfinder,15120800001,10,Q..[IL]..FF,9.98e-08,DPOD3_YEAST__P47110,338,345,350,QGTLESFF,Q..[IL]..FF,0,RecName: Full=DNA polymerase delta subunit 3;,QGTLESFF,OK slimfinder,15120800001,10,Q..[IL]..FF,9.98e-08,MSH6_HUMAN__P52701,4,11,1360,QSTLYSFF,Q..[IL]..FF,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,QSTLYSFF,OK slimfinder,15120800001,10,Q..[IL]..FF,9.98e-08,MSH6_YEAST__Q03834,27,34,1242,QSSLLSFF,Q..[IL]..FF,0,RecName: Full=DNA mismatch repair protein MSH6; AltName: Full=MutS protein homolog 6; AltName: Full=Postmeiotic segregation protein 3;,QSSLLSFF,OK slimfinder,15120800001,10,Q..[IL]..FF,9.98e-08,UNG_YEAST__P12887,21,28,359,QTTIEDFF,Q..[IL]..FF,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166}; Flags: Precursor;,QTTIEDFF,OK slimfinder,15120800001,10,Q..[IL]..FF,9.98e-08,RAD2_YEAST__P07276,995,1002,1031,QKRINEFF,Q..[IL]..FF,0,RecName: Full=DNA repair protein RAD2; EC=3.1.-.-;,QKRINEFF,OK slimfinder,15120800001,10,Q..[IL]..FF,9.98e-08,DNLI1_HUMAN__P18858,2,9,919,QRSIMSFF,Q..[IL]..FF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,QRSIMSFF,OK slimfinder,15120800001,11,Q..I..FF..K,1.55e-06,DNLI1_HUMAN__P18858,2,12,919,QRSIMSFFHPK,Q..I..FF..K,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,QRSIMSFFHPK,OK slimfinder,15120800001,11,Q..I..FF..K,1.55e-06,DPOD3_HUMAN__Q15054,456,466,466,QVSITGFFQRK,Q..I..FF..K,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=DNA polymerase delta subunit p66;,QVSITGFFQRK,OK slimfinder,15120800001,11,Q..I..FF..K,1.55e-06,UNG_YEAST__P12887,21,31,359,QTTIEDFFGTK,Q..I..FF..K,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166}; Flags: Precursor;,QTTIEDFFGTK,OK slimfinder,15120800001,11,Q..I..FF..K,1.55e-06,DPOD3_SCHPO__P30261,362,372,372,QKSIMSFFGKK,Q..I..FF..K,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=Cell division control protein 27;,QKSIMSFFGKK,OK slimfinder,15120800001,12,Q.T..SFF,9.24e-06,DPOD3_YEAST__P47110,338,345,350,QGTLESFF,Q.T..SFF,0,RecName: Full=DNA polymerase delta subunit 3;,QGTLESFF,OK slimfinder,15120800001,12,Q.T..SFF,9.24e-06,MSH6_HUMAN__P52701,4,11,1360,QSTLYSFF,Q.T..SFF,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,QSTLYSFF,OK slimfinder,15120800001,12,Q.T..SFF,9.24e-06,RRM3_YEAST__P38766,35,42,723,QQTLSSFF,Q.T..SFF,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,QQTLSSFF,OK slimfinder,15120800001,12,Q.T..SFF,9.24e-06,UNG_HUMAN__P13051,4,11,313,QKTLYSFF,Q.T..SFF,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,QKTLYSFF,OK slimfinder,15120800001,13,[IL].SFF,1.66e-05,ERCC5_HUMAN__P28715,993,997,1186,IDSFF,[IL].SFF,0,RecName: Full=DNA repair protein complementing XP-G cells; EC=3.1.-.-; AltName: Full=DNA excision repair protein ERCC-5; AltName: Full=Xeroderma pigmentosum group G-complementing protein;,IDSFF,OK slimfinder,15120800001,13,[IL].SFF,1.66e-05,RRM3_YEAST__P38766,38,42,723,LSSFF,[IL].SFF,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,LSSFF,OK slimfinder,15120800001,13,[IL].SFF,1.66e-05,UNG_HUMAN__P13051,7,11,313,LYSFF,[IL].SFF,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,LYSFF,OK slimfinder,15120800001,13,[IL].SFF,1.66e-05,DPOD3_SCHPO__P30261,365,369,372,IMSFF,[IL].SFF,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=Cell division control protein 27;,IMSFF,OK slimfinder,15120800001,13,[IL].SFF,1.66e-05,DPOD3_YEAST__P47110,341,345,350,LESFF,[IL].SFF,0,RecName: Full=DNA polymerase delta subunit 3;,LESFF,OK slimfinder,15120800001,13,[IL].SFF,1.66e-05,MSH6_YEAST__Q03834,30,34,1242,LLSFF,[IL].SFF,0,RecName: Full=DNA mismatch repair protein MSH6; AltName: Full=MutS protein homolog 6; AltName: Full=Postmeiotic segregation protein 3;,LLSFF,OK slimfinder,15120800001,13,[IL].SFF,1.66e-05,MSH6_HUMAN__P52701,7,11,1360,LYSFF,[IL].SFF,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,LYSFF,OK slimfinder,15120800001,13,[IL].SFF,1.66e-05,DNLI1_HUMAN__P18858,5,9,919,IMSFF,[IL].SFF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,IMSFF,OK slimfinder,15120800001,13,[IL].SFF,1.66e-05,DNLI1_HUMAN__P18858,228,232,919,LSSFF,[IL].SFF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,LSSFF,OK slimfinder,15120800001,14,"TL.{0,1}S.{0,1}FF",1.88e-05,DNLI1_HUMAN__P18858,227,232,919,TLSSFF,TL.SFF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,TLSSFF,OK slimfinder,15120800001,14,"TL.{0,1}S.{0,1}FF",1.88e-05,RRM3_YEAST__P38766,37,42,723,TLSSFF,TL.SFF,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,TLSSFF,OK slimfinder,15120800001,14,"TL.{0,1}S.{0,1}FF",1.88e-05,MSH6_HUMAN__P52701,6,11,1360,TLYSFF,TL.SFF,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,TLYSFF,OK slimfinder,15120800001,14,"TL.{0,1}S.{0,1}FF",1.88e-05,DPOD3_YEAST__P47110,340,345,350,TLESFF,TL.SFF,0,RecName: Full=DNA polymerase delta subunit 3;,TLESFF,OK slimfinder,15120800001,14,"TL.{0,1}S.{0,1}FF",1.88e-05,UNG_HUMAN__P13051,6,11,313,TLYSFF,TL.SFF,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,TLYSFF,OK slimfinder,15120800001,15,Q..L.SFF,2.05e-05,DPOD3_YEAST__P47110,338,345,350,QGTLESFF,Q..L.SFF,0,RecName: Full=DNA polymerase delta subunit 3;,QGTLESFF,OK slimfinder,15120800001,15,Q..L.SFF,2.05e-05,MSH6_HUMAN__P52701,4,11,1360,QSTLYSFF,Q..L.SFF,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,QSTLYSFF,OK slimfinder,15120800001,15,Q..L.SFF,2.05e-05,RRM3_YEAST__P38766,35,42,723,QQTLSSFF,Q..L.SFF,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,QQTLSSFF,OK slimfinder,15120800001,15,Q..L.SFF,2.05e-05,MSH6_YEAST__Q03834,27,34,1242,QSSLLSFF,Q..L.SFF,0,RecName: Full=DNA mismatch repair protein MSH6; AltName: Full=MutS protein homolog 6; AltName: Full=Postmeiotic segregation protein 3;,QSSLLSFF,OK slimfinder,15120800001,15,Q..L.SFF,2.05e-05,UNG_HUMAN__P13051,4,11,313,QKTLYSFF,Q..L.SFF,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,QKTLYSFF,OK slimfinder,15120800001,16,"Q..I..FF.{1,2}K",2.56e-05,DPOD3_SCHPO__P30261,362,371,372,QKSIMSFFGK,Q..I..FF.K,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=Cell division control protein 27;,QKSIMSFFGK,OK slimfinder,15120800001,16,"Q..I..FF.{1,2}K",2.56e-05,DPOD3_SCHPO__P30261,362,372,372,QKSIMSFFGKK,Q..I..FF..K,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=Cell division control protein 27;,QKSIMSFFGKK,OK slimfinder,15120800001,16,"Q..I..FF.{1,2}K",2.56e-05,MSH3_YEAST__P25336,4,13,1018,QPTISRFFKK,Q..I..FF.K,0,RecName: Full=DNA mismatch repair protein MSH3; AltName: Full=Mismatch-binding protein; Short=MBP; AltName: Full=MutS protein homolog 3;,QPTISRFFKK,OK slimfinder,15120800001,16,"Q..I..FF.{1,2}K",2.56e-05,UNG_YEAST__P12887,21,31,359,QTTIEDFFGTK,Q..I..FF..K,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166}; Flags: Precursor;,QTTIEDFFGTK,OK slimfinder,15120800001,16,"Q..I..FF.{1,2}K",2.56e-05,DPOD3_HUMAN__Q15054,456,466,466,QVSITGFFQRK,Q..I..FF..K,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=DNA polymerase delta subunit p66;,QVSITGFFQRK,OK slimfinder,15120800001,16,"Q..I..FF.{1,2}K",2.56e-05,DNLI1_HUMAN__P18858,2,12,919,QRSIMSFFHPK,Q..I..FF..K,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,QRSIMSFFHPK,OK slimfinder,15120800001,17,TL..FF,4.39e-05,RRM3_YEAST__P38766,37,42,723,TLSSFF,TL..FF,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,TLSSFF,OK slimfinder,15120800001,17,TL..FF,4.39e-05,UNG_HUMAN__P13051,6,11,313,TLYSFF,TL..FF,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,TLYSFF,OK slimfinder,15120800001,17,TL..FF,4.39e-05,DNLI1_YEAST__P04819,40,45,755,TLARFF,TL..FF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1; Flags: Precursor;,TLARFF,OK slimfinder,15120800001,17,TL..FF,4.39e-05,DPOD3_YEAST__P47110,340,345,350,TLESFF,TL..FF,0,RecName: Full=DNA polymerase delta subunit 3;,TLESFF,OK slimfinder,15120800001,17,TL..FF,4.39e-05,MSH6_HUMAN__P52701,6,11,1360,TLYSFF,TL..FF,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,TLYSFF,OK slimfinder,15120800001,17,TL..FF,4.39e-05,DNLI1_HUMAN__P18858,227,232,919,TLSSFF,TL..FF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,TLSSFF,OK slimfinder,15120800001,18,Q..[IL].S.F,5.50e-05,DPOD3_SCHPO__P30261,362,369,372,QKSIMSFF,Q..[IL].S.F,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=Cell division control protein 27;,QKSIMSFF,OK slimfinder,15120800001,18,Q..[IL].S.F,5.50e-05,RRM3_YEAST__P38766,35,42,723,QQTLSSFF,Q..[IL].S.F,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,QQTLSSFF,OK slimfinder,15120800001,18,Q..[IL].S.F,5.50e-05,UNG_HUMAN__P13051,4,11,313,QKTLYSFF,Q..[IL].S.F,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,QKTLYSFF,OK slimfinder,15120800001,18,Q..[IL].S.F,5.50e-05,DNMT1_HUMAN__P26358,164,171,1616,QTTITSHF,Q..[IL].S.F,0,RecName: Full=DNA (cytosine-5)-methyltransferase 1; Short=Dnmt1; EC=2.1.1.37; AltName: Full=CXXC-type zinc finger protein 9; AltName: Full=DNA methyltransferase HsaI; Short=DNA MTase HsaI; Short=M.HsaI; AltName: Full=MCMT;,QTTITSHF,OK slimfinder,15120800001,18,Q..[IL].S.F,5.50e-05,DPOD3_YEAST__P47110,338,345,350,QGTLESFF,Q..[IL].S.F,0,RecName: Full=DNA polymerase delta subunit 3;,QGTLESFF,OK slimfinder,15120800001,18,Q..[IL].S.F,5.50e-05,MSH6_YEAST__Q03834,27,34,1242,QSSLLSFF,Q..[IL].S.F,0,RecName: Full=DNA mismatch repair protein MSH6; AltName: Full=MutS protein homolog 6; AltName: Full=Postmeiotic segregation protein 3;,QSSLLSFF,OK slimfinder,15120800001,18,Q..[IL].S.F,5.50e-05,MSH6_HUMAN__P52701,4,11,1360,QSTLYSFF,Q..[IL].S.F,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,QSTLYSFF,OK slimfinder,15120800001,18,Q..[IL].S.F,5.50e-05,DNLI1_HUMAN__P18858,2,9,919,QRSIMSFF,Q..[IL].S.F,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,QRSIMSFF,OK slimfinder,15120800001,19,Q..[IL].SF,6.39e-05,RRM3_YEAST__P38766,35,41,723,QQTLSSF,Q..[IL].SF,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,QQTLSSF,OK slimfinder,15120800001,19,Q..[IL].SF,6.39e-05,UNG_HUMAN__P13051,4,10,313,QKTLYSF,Q..[IL].SF,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,QKTLYSF,OK slimfinder,15120800001,19,Q..[IL].SF,6.39e-05,DPOD3_SCHPO__P30261,362,368,372,QKSIMSF,Q..[IL].SF,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=Cell division control protein 27;,QKSIMSF,OK slimfinder,15120800001,19,Q..[IL].SF,6.39e-05,DPOD3_YEAST__P47110,338,344,350,QGTLESF,Q..[IL].SF,0,RecName: Full=DNA polymerase delta subunit 3;,QGTLESF,OK slimfinder,15120800001,19,Q..[IL].SF,6.39e-05,MSH6_YEAST__Q03834,27,33,1242,QSSLLSF,Q..[IL].SF,0,RecName: Full=DNA mismatch repair protein MSH6; AltName: Full=MutS protein homolog 6; AltName: Full=Postmeiotic segregation protein 3;,QSSLLSF,OK slimfinder,15120800001,19,Q..[IL].SF,6.39e-05,MSH6_HUMAN__P52701,4,10,1360,QSTLYSF,Q..[IL].SF,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,QSTLYSF,OK slimfinder,15120800001,19,Q..[IL].SF,6.39e-05,DNLI1_HUMAN__P18858,2,8,919,QRSIMSF,Q..[IL].SF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,QRSIMSF,OK slimfinder,15120800001,20,K..Q..[IL]..FF,1.07e-04,DPOD3_SCHPO__P30261,359,369,372,KPQQKSIMSFF,K..Q..[IL]..FF,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=Cell division control protein 27;,KPQQKSIMSFF,OK slimfinder,15120800001,20,K..Q..[IL]..FF,1.07e-04,UNG_YEAST__P12887,18,28,359,KRKQTTIEDFF,K..Q..[IL]..FF,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166}; Flags: Precursor;,KRKQTTIEDFF,OK slimfinder,15120800001,20,K..Q..[IL]..FF,1.07e-04,DNLI1_YEAST__P04819,35,45,755,KPKQATLARFF,K..Q..[IL]..FF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1; Flags: Precursor;,KPKQATLARFF,OK slimfinder,15120800001,20,K..Q..[IL]..FF,1.07e-04,MSH6_YEAST__Q03834,24,34,1242,KMKQSSLLSFF,K..Q..[IL]..FF,0,RecName: Full=DNA mismatch repair protein MSH6; AltName: Full=MutS protein homolog 6; AltName: Full=Postmeiotic segregation protein 3;,KMKQSSLLSFF,OK slimfinder,15120800001,21,[ST]..SFF,1.40e-04,RRM3_YEAST__P38766,37,42,723,TLSSFF,[ST]..SFF,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,TLSSFF,OK slimfinder,15120800001,21,[ST]..SFF,1.40e-04,UNG_HUMAN__P13051,6,11,313,TLYSFF,[ST]..SFF,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,TLYSFF,OK slimfinder,15120800001,21,[ST]..SFF,1.40e-04,DPOD3_SCHPO__P30261,364,369,372,SIMSFF,[ST]..SFF,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=Cell division control protein 27;,SIMSFF,OK slimfinder,15120800001,21,[ST]..SFF,1.40e-04,DPOD3_YEAST__P47110,340,345,350,TLESFF,[ST]..SFF,0,RecName: Full=DNA polymerase delta subunit 3;,TLESFF,OK slimfinder,15120800001,21,[ST]..SFF,1.40e-04,MSH6_HUMAN__P52701,6,11,1360,TLYSFF,[ST]..SFF,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,TLYSFF,OK slimfinder,15120800001,21,[ST]..SFF,1.40e-04,MSH6_YEAST__Q03834,29,34,1242,SLLSFF,[ST]..SFF,0,RecName: Full=DNA mismatch repair protein MSH6; AltName: Full=MutS protein homolog 6; AltName: Full=Postmeiotic segregation protein 3;,SLLSFF,OK slimfinder,15120800001,21,[ST]..SFF,1.40e-04,DNLI1_HUMAN__P18858,4,9,919,SIMSFF,[ST]..SFF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,SIMSFF,OK slimfinder,15120800001,21,[ST]..SFF,1.40e-04,DNLI1_HUMAN__P18858,227,232,919,TLSSFF,[ST]..SFF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,TLSSFF,OK slimfinder,15120800001,22,[KR]Q..L..FF,1.53e-04,DNLI1_YEAST__P04819,37,45,755,KQATLARFF,[KR]Q..L..FF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1; Flags: Precursor;,KQATLARFF,OK slimfinder,15120800001,22,[KR]Q..L..FF,1.53e-04,DPOD3_YEAST__P47110,337,345,350,KQGTLESFF,[KR]Q..L..FF,0,RecName: Full=DNA polymerase delta subunit 3;,KQGTLESFF,OK slimfinder,15120800001,22,[KR]Q..L..FF,1.53e-04,RRM3_YEAST__P38766,34,42,723,RQQTLSSFF,[KR]Q..L..FF,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,RQQTLSSFF,OK slimfinder,15120800001,22,[KR]Q..L..FF,1.53e-04,MSH6_YEAST__Q03834,26,34,1242,KQSSLLSFF,[KR]Q..L..FF,0,RecName: Full=DNA mismatch repair protein MSH6; AltName: Full=MutS protein homolog 6; AltName: Full=Postmeiotic segregation protein 3;,KQSSLLSFF,OK slimfinder,15120800001,22,[KR]Q..L..FF,1.53e-04,MSH6_HUMAN__P52701,3,11,1360,RQSTLYSFF,[KR]Q..L..FF,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,RQSTLYSFF,OK slimfinder,15120800001,23,Q.TL..F,1.64e-04,DNLI1_YEAST__P04819,38,44,755,QATLARF,Q.TL..F,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1; Flags: Precursor;,QATLARF,OK slimfinder,15120800001,23,Q.TL..F,1.64e-04,DPOD3_YEAST__P47110,338,344,350,QGTLESF,Q.TL..F,0,RecName: Full=DNA polymerase delta subunit 3;,QGTLESF,OK slimfinder,15120800001,23,Q.TL..F,1.64e-04,RRM3_YEAST__P38766,35,41,723,QQTLSSF,Q.TL..F,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,QQTLSSF,OK slimfinder,15120800001,23,Q.TL..F,1.64e-04,MSH6_HUMAN__P52701,4,10,1360,QSTLYSF,Q.TL..F,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,QSTLYSF,OK slimfinder,15120800001,23,Q.TL..F,1.64e-04,UNG_HUMAN__P13051,4,10,313,QKTLYSF,Q.TL..F,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,QKTLYSF,OK slimfinder,15120800001,24,Q.TL.S.F,2.11e-04,DPOD3_YEAST__P47110,338,345,350,QGTLESFF,Q.TL.S.F,0,RecName: Full=DNA polymerase delta subunit 3;,QGTLESFF,OK slimfinder,15120800001,24,Q.TL.S.F,2.11e-04,MSH6_HUMAN__P52701,4,11,1360,QSTLYSFF,Q.TL.S.F,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,QSTLYSFF,OK slimfinder,15120800001,24,Q.TL.S.F,2.11e-04,RRM3_YEAST__P38766,35,42,723,QQTLSSFF,Q.TL.S.F,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,QQTLSSFF,OK slimfinder,15120800001,24,Q.TL.S.F,2.11e-04,UNG_HUMAN__P13051,4,11,313,QKTLYSFF,Q.TL.S.F,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,QKTLYSFF,OK slimfinder,15120800001,25,T..SFF,2.13e-04,DNLI1_HUMAN__P18858,227,232,919,TLSSFF,T..SFF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,TLSSFF,OK slimfinder,15120800001,25,T..SFF,2.13e-04,DPOD3_YEAST__P47110,340,345,350,TLESFF,T..SFF,0,RecName: Full=DNA polymerase delta subunit 3;,TLESFF,OK slimfinder,15120800001,25,T..SFF,2.13e-04,RRM3_YEAST__P38766,37,42,723,TLSSFF,T..SFF,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,TLSSFF,OK slimfinder,15120800001,25,T..SFF,2.13e-04,MSH6_HUMAN__P52701,6,11,1360,TLYSFF,T..SFF,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,TLYSFF,OK slimfinder,15120800001,25,T..SFF,2.13e-04,UNG_HUMAN__P13051,6,11,313,TLYSFF,T..SFF,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,TLYSFF,OK slimfinder,15120800001,26,Q.TL.SF,2.33e-04,DPOD3_YEAST__P47110,338,344,350,QGTLESF,Q.TL.SF,0,RecName: Full=DNA polymerase delta subunit 3;,QGTLESF,OK slimfinder,15120800001,26,Q.TL.SF,2.33e-04,MSH6_HUMAN__P52701,4,10,1360,QSTLYSF,Q.TL.SF,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,QSTLYSF,OK slimfinder,15120800001,26,Q.TL.SF,2.33e-04,RRM3_YEAST__P38766,35,41,723,QQTLSSF,Q.TL.SF,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,QQTLSSF,OK slimfinder,15120800001,26,Q.TL.SF,2.33e-04,UNG_HUMAN__P13051,4,10,313,QKTLYSF,Q.TL.SF,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,QKTLYSF,OK slimfinder,15120800001,27,[ST][IL]..FF,2.53e-04,DPOD3_HUMAN__Q15054,458,463,466,SITGFF,[ST][IL]..FF,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=DNA polymerase delta subunit p66;,SITGFF,OK slimfinder,15120800001,27,[ST][IL]..FF,2.53e-04,MSH3_YEAST__P25336,6,11,1018,TISRFF,[ST][IL]..FF,0,RecName: Full=DNA mismatch repair protein MSH3; AltName: Full=Mismatch-binding protein; Short=MBP; AltName: Full=MutS protein homolog 3;,TISRFF,OK slimfinder,15120800001,27,[ST][IL]..FF,2.53e-04,DPOD3_SCHPO__P30261,364,369,372,SIMSFF,[ST][IL]..FF,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=Cell division control protein 27;,SIMSFF,OK slimfinder,15120800001,27,[ST][IL]..FF,2.53e-04,RRM3_YEAST__P38766,37,42,723,TLSSFF,[ST][IL]..FF,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,TLSSFF,OK slimfinder,15120800001,27,[ST][IL]..FF,2.53e-04,UNG_HUMAN__P13051,6,11,313,TLYSFF,[ST][IL]..FF,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,TLYSFF,OK slimfinder,15120800001,27,[ST][IL]..FF,2.53e-04,DNLI1_YEAST__P04819,40,45,755,TLARFF,[ST][IL]..FF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1; Flags: Precursor;,TLARFF,OK slimfinder,15120800001,27,[ST][IL]..FF,2.53e-04,DPOD3_YEAST__P47110,340,345,350,TLESFF,[ST][IL]..FF,0,RecName: Full=DNA polymerase delta subunit 3;,TLESFF,OK slimfinder,15120800001,27,[ST][IL]..FF,2.53e-04,MSH6_HUMAN__P52701,6,11,1360,TLYSFF,[ST][IL]..FF,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,TLYSFF,OK slimfinder,15120800001,27,[ST][IL]..FF,2.53e-04,UNG_YEAST__P12887,23,28,359,TIEDFF,[ST][IL]..FF,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166}; Flags: Precursor;,TIEDFF,OK slimfinder,15120800001,27,[ST][IL]..FF,2.53e-04,DNLI1_HUMAN__P18858,4,9,919,SIMSFF,[ST][IL]..FF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,SIMSFF,OK slimfinder,15120800001,27,[ST][IL]..FF,2.53e-04,DNLI1_HUMAN__P18858,227,232,919,TLSSFF,[ST][IL]..FF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,TLSSFF,OK slimfinder,15120800001,28,Q..I..FF,3.68e-04,MSH3_YEAST__P25336,4,11,1018,QPTISRFF,Q..I..FF,0,RecName: Full=DNA mismatch repair protein MSH3; AltName: Full=Mismatch-binding protein; Short=MBP; AltName: Full=MutS protein homolog 3;,QPTISRFF,OK slimfinder,15120800001,28,Q..I..FF,3.68e-04,DPOD3_SCHPO__P30261,362,369,372,QKSIMSFF,Q..I..FF,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=Cell division control protein 27;,QKSIMSFF,OK slimfinder,15120800001,28,Q..I..FF,3.68e-04,DPOD3_HUMAN__Q15054,456,463,466,QVSITGFF,Q..I..FF,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=DNA polymerase delta subunit p66;,QVSITGFF,OK slimfinder,15120800001,28,Q..I..FF,3.68e-04,UNG_YEAST__P12887,21,28,359,QTTIEDFF,Q..I..FF,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166}; Flags: Precursor;,QTTIEDFF,OK slimfinder,15120800001,28,Q..I..FF,3.68e-04,RAD2_YEAST__P07276,995,1002,1031,QKRINEFF,Q..I..FF,0,RecName: Full=DNA repair protein RAD2; EC=3.1.-.-;,QKRINEFF,OK slimfinder,15120800001,28,Q..I..FF,3.68e-04,DNLI1_HUMAN__P18858,2,9,919,QRSIMSFF,Q..I..FF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,QRSIMSFF,OK slimfinder,15120800001,29,Q.[ST]..S.F,4.49e-04,RRM3_YEAST__P38766,35,42,723,QQTLSSFF,Q.[ST]..S.F,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,QQTLSSFF,OK slimfinder,15120800001,29,Q.[ST]..S.F,4.49e-04,UNG_HUMAN__P13051,4,11,313,QKTLYSFF,Q.[ST]..S.F,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,QKTLYSFF,OK slimfinder,15120800001,29,Q.[ST]..S.F,4.49e-04,DPOD3_SCHPO__P30261,362,369,372,QKSIMSFF,Q.[ST]..S.F,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=Cell division control protein 27;,QKSIMSFF,OK slimfinder,15120800001,29,Q.[ST]..S.F,4.49e-04,DPOD3_YEAST__P47110,338,345,350,QGTLESFF,Q.[ST]..S.F,0,RecName: Full=DNA polymerase delta subunit 3;,QGTLESFF,OK slimfinder,15120800001,29,Q.[ST]..S.F,4.49e-04,DNMT1_HUMAN__P26358,164,171,1616,QTTITSHF,Q.[ST]..S.F,0,RecName: Full=DNA (cytosine-5)-methyltransferase 1; Short=Dnmt1; EC=2.1.1.37; AltName: Full=CXXC-type zinc finger protein 9; AltName: Full=DNA methyltransferase HsaI; Short=DNA MTase HsaI; Short=M.HsaI; AltName: Full=MCMT;,QTTITSHF,OK slimfinder,15120800001,29,Q.[ST]..S.F,4.49e-04,MSH6_YEAST__Q03834,27,34,1242,QSSLLSFF,Q.[ST]..S.F,0,RecName: Full=DNA mismatch repair protein MSH6; AltName: Full=MutS protein homolog 6; AltName: Full=Postmeiotic segregation protein 3;,QSSLLSFF,OK slimfinder,15120800001,29,Q.[ST]..S.F,4.49e-04,MSH6_HUMAN__P52701,4,11,1360,QSTLYSFF,Q.[ST]..S.F,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,QSTLYSFF,OK slimfinder,15120800001,29,Q.[ST]..S.F,4.49e-04,DNLI1_HUMAN__P18858,2,9,919,QRSIMSFF,Q.[ST]..S.F,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,QRSIMSFF,OK slimfinder,15120800001,30,[KR]..TL..FF,5.03e-04,DNLI1_YEAST__P04819,37,45,755,KQATLARFF,[KR]..TL..FF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1; Flags: Precursor;,KQATLARFF,OK slimfinder,15120800001,30,[KR]..TL..FF,5.03e-04,DPOD3_YEAST__P47110,337,345,350,KQGTLESFF,[KR]..TL..FF,0,RecName: Full=DNA polymerase delta subunit 3;,KQGTLESFF,OK slimfinder,15120800001,30,[KR]..TL..FF,5.03e-04,RRM3_YEAST__P38766,34,42,723,RQQTLSSFF,[KR]..TL..FF,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,RQQTLSSFF,OK slimfinder,15120800001,30,[KR]..TL..FF,5.03e-04,MSH6_HUMAN__P52701,3,11,1360,RQSTLYSFF,[KR]..TL..FF,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,RQSTLYSFF,OK slimfinder,15120800001,31,Q.[ST]..SF,5.25e-04,RRM3_YEAST__P38766,35,41,723,QQTLSSF,Q.[ST]..SF,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,QQTLSSF,OK slimfinder,15120800001,31,Q.[ST]..SF,5.25e-04,UNG_HUMAN__P13051,4,10,313,QKTLYSF,Q.[ST]..SF,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,QKTLYSF,OK slimfinder,15120800001,31,Q.[ST]..SF,5.25e-04,DPOD3_SCHPO__P30261,362,368,372,QKSIMSF,Q.[ST]..SF,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=Cell division control protein 27;,QKSIMSF,OK slimfinder,15120800001,31,Q.[ST]..SF,5.25e-04,DPOD3_YEAST__P47110,338,344,350,QGTLESF,Q.[ST]..SF,0,RecName: Full=DNA polymerase delta subunit 3;,QGTLESF,OK slimfinder,15120800001,31,Q.[ST]..SF,5.25e-04,MSH6_HUMAN__P52701,4,10,1360,QSTLYSF,Q.[ST]..SF,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,QSTLYSF,OK slimfinder,15120800001,31,Q.[ST]..SF,5.25e-04,MSH6_YEAST__Q03834,27,33,1242,QSSLLSF,Q.[ST]..SF,0,RecName: Full=DNA mismatch repair protein MSH6; AltName: Full=MutS protein homolog 6; AltName: Full=Postmeiotic segregation protein 3;,QSSLLSF,OK slimfinder,15120800001,31,Q.[ST]..SF,5.25e-04,DNLI1_HUMAN__P18858,2,8,919,QRSIMSF,Q.[ST]..SF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,QRSIMSF,OK slimfinder,15120800001,32,L.SFF,5.55e-04,RRM3_YEAST__P38766,38,42,723,LSSFF,L.SFF,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,LSSFF,OK slimfinder,15120800001,32,L.SFF,5.55e-04,UNG_HUMAN__P13051,7,11,313,LYSFF,L.SFF,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,LYSFF,OK slimfinder,15120800001,32,L.SFF,5.55e-04,DPOD3_YEAST__P47110,341,345,350,LESFF,L.SFF,0,RecName: Full=DNA polymerase delta subunit 3;,LESFF,OK slimfinder,15120800001,32,L.SFF,5.55e-04,MSH6_HUMAN__P52701,7,11,1360,LYSFF,L.SFF,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,LYSFF,OK slimfinder,15120800001,32,L.SFF,5.55e-04,MSH6_YEAST__Q03834,30,34,1242,LLSFF,L.SFF,0,RecName: Full=DNA mismatch repair protein MSH6; AltName: Full=MutS protein homolog 6; AltName: Full=Postmeiotic segregation protein 3;,LLSFF,OK slimfinder,15120800001,32,L.SFF,5.55e-04,DNLI1_HUMAN__P18858,228,232,919,LSSFF,L.SFF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,LSSFF,OK slimfinder,15120800001,33,Q.T..S.F,5.99e-04,DNMT1_HUMAN__P26358,164,171,1616,QTTITSHF,Q.T..S.F,0,RecName: Full=DNA (cytosine-5)-methyltransferase 1; Short=Dnmt1; EC=2.1.1.37; AltName: Full=CXXC-type zinc finger protein 9; AltName: Full=DNA methyltransferase HsaI; Short=DNA MTase HsaI; Short=M.HsaI; AltName: Full=MCMT;,QTTITSHF,OK slimfinder,15120800001,33,Q.T..S.F,5.99e-04,DPOD3_YEAST__P47110,338,345,350,QGTLESFF,Q.T..S.F,0,RecName: Full=DNA polymerase delta subunit 3;,QGTLESFF,OK slimfinder,15120800001,33,Q.T..S.F,5.99e-04,RRM3_YEAST__P38766,35,42,723,QQTLSSFF,Q.T..S.F,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,QQTLSSFF,OK slimfinder,15120800001,33,Q.T..S.F,5.99e-04,MSH6_HUMAN__P52701,4,11,1360,QSTLYSFF,Q.T..S.F,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,QSTLYSFF,OK slimfinder,15120800001,33,Q.T..S.F,5.99e-04,UNG_HUMAN__P13051,4,11,313,QKTLYSFF,Q.T..S.F,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,QKTLYSFF,OK slimfinder,15120800001,34,"I..FF.{1,2}K",7.21e-04,MSH3_YEAST__P25336,7,13,1018,ISRFFKK,I..FF.K,0,RecName: Full=DNA mismatch repair protein MSH3; AltName: Full=Mismatch-binding protein; Short=MBP; AltName: Full=MutS protein homolog 3;,ISRFFKK,OK slimfinder,15120800001,34,"I..FF.{1,2}K",7.21e-04,DPOD3_SCHPO__P30261,365,371,372,IMSFFGK,I..FF.K,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=Cell division control protein 27;,IMSFFGK,OK slimfinder,15120800001,34,"I..FF.{1,2}K",7.21e-04,DPOD3_SCHPO__P30261,365,372,372,IMSFFGKK,I..FF..K,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=Cell division control protein 27;,IMSFFGKK,OK slimfinder,15120800001,34,"I..FF.{1,2}K",7.21e-04,RFC1_YEAST__P38630,4,10,861,ISDFFGK,I..FF.K,0,RecName: Full=Replication factor C subunit 1; Short=Replication factor C1; AltName: Full=Activator 1 95 kDa subunit; AltName: Full=Cell division control protein 44;,ISDFFGK,OK slimfinder,15120800001,34,"I..FF.{1,2}K",7.21e-04,DPOD3_HUMAN__Q15054,459,466,466,ITGFFQRK,I..FF..K,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=DNA polymerase delta subunit p66;,ITGFFQRK,OK slimfinder,15120800001,34,"I..FF.{1,2}K",7.21e-04,UNG_YEAST__P12887,24,31,359,IEDFFGTK,I..FF..K,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166}; Flags: Precursor;,IEDFFGTK,OK slimfinder,15120800001,34,"I..FF.{1,2}K",7.21e-04,DNLI1_HUMAN__P18858,5,12,919,IMSFFHPK,I..FF..K,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,IMSFFHPK,OK slimfinder,15120800001,35,Q.[ST][IL]..F,0.001,DPOD3_HUMAN__Q15054,456,462,466,QVSITGF,Q.[ST][IL]..F,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=DNA polymerase delta subunit p66;,QVSITGF,OK slimfinder,15120800001,35,Q.[ST][IL]..F,0.001,MSH3_YEAST__P25336,4,10,1018,QPTISRF,Q.[ST][IL]..F,0,RecName: Full=DNA mismatch repair protein MSH3; AltName: Full=Mismatch-binding protein; Short=MBP; AltName: Full=MutS protein homolog 3;,QPTISRF,OK slimfinder,15120800001,35,Q.[ST][IL]..F,0.001,DPOD3_SCHPO__P30261,362,368,372,QKSIMSF,Q.[ST][IL]..F,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=Cell division control protein 27;,QKSIMSF,OK slimfinder,15120800001,35,Q.[ST][IL]..F,0.001,RRM3_YEAST__P38766,35,41,723,QQTLSSF,Q.[ST][IL]..F,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,QQTLSSF,OK slimfinder,15120800001,35,Q.[ST][IL]..F,0.001,UNG_HUMAN__P13051,4,10,313,QKTLYSF,Q.[ST][IL]..F,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,QKTLYSF,OK slimfinder,15120800001,35,Q.[ST][IL]..F,0.001,DNLI1_YEAST__P04819,38,44,755,QATLARF,Q.[ST][IL]..F,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1; Flags: Precursor;,QATLARF,OK slimfinder,15120800001,35,Q.[ST][IL]..F,0.001,DPOD3_YEAST__P47110,338,344,350,QGTLESF,Q.[ST][IL]..F,0,RecName: Full=DNA polymerase delta subunit 3;,QGTLESF,OK slimfinder,15120800001,35,Q.[ST][IL]..F,0.001,MSH6_HUMAN__P52701,4,10,1360,QSTLYSF,Q.[ST][IL]..F,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,QSTLYSF,OK slimfinder,15120800001,35,Q.[ST][IL]..F,0.001,UNG_YEAST__P12887,21,27,359,QTTIEDF,Q.[ST][IL]..F,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166}; Flags: Precursor;,QTTIEDF,OK slimfinder,15120800001,35,Q.[ST][IL]..F,0.001,DNLI1_HUMAN__P18858,2,8,919,QRSIMSF,Q.[ST][IL]..F,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,QRSIMSF,OK slimfinder,15120800001,36,[KR]Q.TL..F,0.002,DNLI1_YEAST__P04819,37,44,755,KQATLARF,[KR]Q.TL..F,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1; Flags: Precursor;,KQATLARF,OK slimfinder,15120800001,36,[KR]Q.TL..F,0.002,DPOD3_YEAST__P47110,337,344,350,KQGTLESF,[KR]Q.TL..F,0,RecName: Full=DNA polymerase delta subunit 3;,KQGTLESF,OK slimfinder,15120800001,36,[KR]Q.TL..F,0.002,RRM3_YEAST__P38766,34,41,723,RQQTLSSF,[KR]Q.TL..F,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,RQQTLSSF,OK slimfinder,15120800001,36,[KR]Q.TL..F,0.002,MSH6_HUMAN__P52701,3,10,1360,RQSTLYSF,[KR]Q.TL..F,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,RQSTLYSF,OK slimfinder,15120800001,37,"Q.T.{1,2}S.{0,1}FF",0.002,MSH3_YEAST__P25336,4,11,1018,QPTISRFF,Q.T.S.FF,0,RecName: Full=DNA mismatch repair protein MSH3; AltName: Full=Mismatch-binding protein; Short=MBP; AltName: Full=MutS protein homolog 3;,QPTISRFF,OK slimfinder,15120800001,37,"Q.T.{1,2}S.{0,1}FF",0.002,RRM3_YEAST__P38766,35,42,723,QQTLSSFF,Q.T..SFF,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,QQTLSSFF,OK slimfinder,15120800001,37,"Q.T.{1,2}S.{0,1}FF",0.002,MSH6_HUMAN__P52701,4,11,1360,QSTLYSFF,Q.T..SFF,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,QSTLYSFF,OK slimfinder,15120800001,37,"Q.T.{1,2}S.{0,1}FF",0.002,DPOD3_YEAST__P47110,338,345,350,QGTLESFF,Q.T..SFF,0,RecName: Full=DNA polymerase delta subunit 3;,QGTLESFF,OK slimfinder,15120800001,37,"Q.T.{1,2}S.{0,1}FF",0.002,UNG_HUMAN__P13051,4,11,313,QKTLYSFF,Q.T..SFF,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,QKTLYSFF,OK slimfinder,15120800001,38,[ILM]..F[FY],0.004,DNLI1_YEAST__P04819,41,45,755,LARFF,[ILM]..F[FY],0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1; Flags: Precursor;,LARFF,OK slimfinder,15120800001,38,[ILM]..F[FY],0.004,DPOD3_HUMAN__Q15054,459,463,466,ITGFF,[ILM]..F[FY],0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=DNA polymerase delta subunit p66;,ITGFF,OK slimfinder,15120800001,38,[ILM]..F[FY],0.004,MSH3_YEAST__P25336,7,11,1018,ISRFF,[ILM]..F[FY],0,RecName: Full=DNA mismatch repair protein MSH3; AltName: Full=Mismatch-binding protein; Short=MBP; AltName: Full=MutS protein homolog 3;,ISRFF,OK slimfinder,15120800001,38,[ILM]..F[FY],0.004,FEN1_HUMAN__P39748,340,344,380,LDDFF,[ILM]..F[FY],0,RecName: Full=Flap endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; Short=FEN-1 {ECO:0000255|HAMAP-Rule:MF_03140}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=DNase IV; AltName: Full=Flap structure-specific endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=Maturation factor 1; Short=MF1; Short=hFEN-1;,LDDFF,OK slimfinder,15120800001,38,[ILM]..F[FY],0.004,FEN1_HUMAN__P39748,65,69,380,MGMFY,[ILM]..F[FY],0,RecName: Full=Flap endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; Short=FEN-1 {ECO:0000255|HAMAP-Rule:MF_03140}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=DNase IV; AltName: Full=Flap structure-specific endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=Maturation factor 1; Short=MF1; Short=hFEN-1;,MGMFY,OK slimfinder,15120800001,38,[ILM]..F[FY],0.004,DPOD3_SCHPO__P30261,365,369,372,IMSFF,[ILM]..F[FY],0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=Cell division control protein 27;,IMSFF,OK slimfinder,15120800001,38,[ILM]..F[FY],0.004,ERCC5_HUMAN__P28715,993,997,1186,IDSFF,[ILM]..F[FY],0,RecName: Full=DNA repair protein complementing XP-G cells; EC=3.1.-.-; AltName: Full=DNA excision repair protein ERCC-5; AltName: Full=Xeroderma pigmentosum group G-complementing protein;,IDSFF,OK slimfinder,15120800001,38,[ILM]..F[FY],0.004,UNG_YEAST__P12887,24,28,359,IEDFF,[ILM]..F[FY],0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166}; Flags: Precursor;,IEDFF,OK slimfinder,15120800001,38,[ILM]..F[FY],0.004,UNG_HUMAN__P13051,7,11,313,LYSFF,[ILM]..F[FY],0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,LYSFF,OK slimfinder,15120800001,38,[ILM]..F[FY],0.004,RFC1_YEAST__P38630,4,8,861,ISDFF,[ILM]..F[FY],0,RecName: Full=Replication factor C subunit 1; Short=Replication factor C1; AltName: Full=Activator 1 95 kDa subunit; AltName: Full=Cell division control protein 44;,ISDFF,OK slimfinder,15120800001,38,[ILM]..F[FY],0.004,RRM3_YEAST__P38766,38,42,723,LSSFF,[ILM]..F[FY],0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,LSSFF,OK slimfinder,15120800001,38,[ILM]..F[FY],0.004,DPOD3_YEAST__P47110,341,345,350,LESFF,[ILM]..F[FY],0,RecName: Full=DNA polymerase delta subunit 3;,LESFF,OK slimfinder,15120800001,38,[ILM]..F[FY],0.004,MSH6_HUMAN__P52701,7,11,1360,LYSFF,[ILM]..F[FY],0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,LYSFF,OK slimfinder,15120800001,38,[ILM]..F[FY],0.004,MSH6_YEAST__Q03834,30,34,1242,LLSFF,[ILM]..F[FY],0,RecName: Full=DNA mismatch repair protein MSH6; AltName: Full=MutS protein homolog 6; AltName: Full=Postmeiotic segregation protein 3;,LLSFF,OK slimfinder,15120800001,38,[ILM]..F[FY],0.004,CDN1A_HUMAN__P38936,147,151,164,MTDFY,[ILM]..F[FY],0,RecName: Full=Cyclin-dependent kinase inhibitor 1; AltName: Full=CDK-interacting protein 1; AltName: Full=Melanoma differentiation-associated protein 6; Short=MDA-6; AltName: Full=p21;,MTDFY,OK slimfinder,15120800001,38,[ILM]..F[FY],0.004,FEN1_YEAST__P26793,343,347,382,LDGFF,[ILM]..F[FY],0,RecName: Full=Flap endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; Short=FEN-1 {ECO:0000255|HAMAP-Rule:MF_03140}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=Flap structure-specific endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=RAD2 homolog nuclease 1; Short=RTH1 nuclease; AltName: Full=Structure-specific endonuclease RAD27;,LDGFF,Warning: DG slimfinder,15120800001,38,[ILM]..F[FY],0.004,FEN1_YEAST__P26793,66,70,382,MGMFY,[ILM]..F[FY],0,RecName: Full=Flap endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; Short=FEN-1 {ECO:0000255|HAMAP-Rule:MF_03140}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=Flap structure-specific endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=RAD2 homolog nuclease 1; Short=RTH1 nuclease; AltName: Full=Structure-specific endonuclease RAD27;,MGMFY,OK slimfinder,15120800001,38,[ILM]..F[FY],0.004,RAD2_YEAST__P07276,998,1002,1031,INEFF,[ILM]..F[FY],0,RecName: Full=DNA repair protein RAD2; EC=3.1.-.-;,INEFF,OK slimfinder,15120800001,38,[ILM]..F[FY],0.004,DNLI1_HUMAN__P18858,5,9,919,IMSFF,[ILM]..F[FY],0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,IMSFF,OK slimfinder,15120800001,38,[ILM]..F[FY],0.004,DNLI1_HUMAN__P18858,228,232,919,LSSFF,[ILM]..F[FY],0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,LSSFF,OK slimfinder,15120800001,39,[IL]..FF,0.006,DNLI1_YEAST__P04819,41,45,755,LARFF,[IL]..FF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1; Flags: Precursor;,LARFF,OK slimfinder,15120800001,39,[IL]..FF,0.006,DPOD3_HUMAN__Q15054,459,463,466,ITGFF,[IL]..FF,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=DNA polymerase delta subunit p66;,ITGFF,OK slimfinder,15120800001,39,[IL]..FF,0.006,MSH3_YEAST__P25336,7,11,1018,ISRFF,[IL]..FF,0,RecName: Full=DNA mismatch repair protein MSH3; AltName: Full=Mismatch-binding protein; Short=MBP; AltName: Full=MutS protein homolog 3;,ISRFF,OK slimfinder,15120800001,39,[IL]..FF,0.006,FEN1_HUMAN__P39748,340,344,380,LDDFF,[IL]..FF,0,RecName: Full=Flap endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; Short=FEN-1 {ECO:0000255|HAMAP-Rule:MF_03140}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=DNase IV; AltName: Full=Flap structure-specific endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=Maturation factor 1; Short=MF1; Short=hFEN-1;,LDDFF,OK slimfinder,15120800001,39,[IL]..FF,0.006,DPOD3_SCHPO__P30261,365,369,372,IMSFF,[IL]..FF,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=Cell division control protein 27;,IMSFF,OK slimfinder,15120800001,39,[IL]..FF,0.006,ERCC5_HUMAN__P28715,993,997,1186,IDSFF,[IL]..FF,0,RecName: Full=DNA repair protein complementing XP-G cells; EC=3.1.-.-; AltName: Full=DNA excision repair protein ERCC-5; AltName: Full=Xeroderma pigmentosum group G-complementing protein;,IDSFF,OK slimfinder,15120800001,39,[IL]..FF,0.006,UNG_HUMAN__P13051,7,11,313,LYSFF,[IL]..FF,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,LYSFF,OK slimfinder,15120800001,39,[IL]..FF,0.006,RFC1_YEAST__P38630,4,8,861,ISDFF,[IL]..FF,0,RecName: Full=Replication factor C subunit 1; Short=Replication factor C1; AltName: Full=Activator 1 95 kDa subunit; AltName: Full=Cell division control protein 44;,ISDFF,OK slimfinder,15120800001,39,[IL]..FF,0.006,RRM3_YEAST__P38766,38,42,723,LSSFF,[IL]..FF,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,LSSFF,OK slimfinder,15120800001,39,[IL]..FF,0.006,DPOD3_YEAST__P47110,341,345,350,LESFF,[IL]..FF,0,RecName: Full=DNA polymerase delta subunit 3;,LESFF,OK slimfinder,15120800001,39,[IL]..FF,0.006,MSH6_HUMAN__P52701,7,11,1360,LYSFF,[IL]..FF,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,LYSFF,OK slimfinder,15120800001,39,[IL]..FF,0.006,MSH6_YEAST__Q03834,30,34,1242,LLSFF,[IL]..FF,0,RecName: Full=DNA mismatch repair protein MSH6; AltName: Full=MutS protein homolog 6; AltName: Full=Postmeiotic segregation protein 3;,LLSFF,OK slimfinder,15120800001,39,[IL]..FF,0.006,UNG_YEAST__P12887,24,28,359,IEDFF,[IL]..FF,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166}; Flags: Precursor;,IEDFF,OK slimfinder,15120800001,39,[IL]..FF,0.006,FEN1_YEAST__P26793,343,347,382,LDGFF,[IL]..FF,0,RecName: Full=Flap endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; Short=FEN-1 {ECO:0000255|HAMAP-Rule:MF_03140}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=Flap structure-specific endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=RAD2 homolog nuclease 1; Short=RTH1 nuclease; AltName: Full=Structure-specific endonuclease RAD27;,LDGFF,Warning: DG slimfinder,15120800001,39,[IL]..FF,0.006,RAD2_YEAST__P07276,998,1002,1031,INEFF,[IL]..FF,0,RecName: Full=DNA repair protein RAD2; EC=3.1.-.-;,INEFF,OK slimfinder,15120800001,39,[IL]..FF,0.006,DNLI1_HUMAN__P18858,5,9,919,IMSFF,[IL]..FF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,IMSFF,OK slimfinder,15120800001,39,[IL]..FF,0.006,DNLI1_HUMAN__P18858,228,232,919,LSSFF,[IL]..FF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,LSSFF,OK slimfinder,15120800001,40,TL.S.F,0.010,DNLI1_HUMAN__P18858,227,232,919,TLSSFF,TL.S.F,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,TLSSFF,OK slimfinder,15120800001,40,TL.S.F,0.010,DPOD3_YEAST__P47110,340,345,350,TLESFF,TL.S.F,0,RecName: Full=DNA polymerase delta subunit 3;,TLESFF,OK slimfinder,15120800001,40,TL.S.F,0.010,RRM3_YEAST__P38766,37,42,723,TLSSFF,TL.S.F,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,TLSSFF,OK slimfinder,15120800001,40,TL.S.F,0.010,MSH6_HUMAN__P52701,6,11,1360,TLYSFF,TL.S.F,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,TLYSFF,OK slimfinder,15120800001,40,TL.S.F,0.010,UNG_HUMAN__P13051,6,11,313,TLYSFF,TL.S.F,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,TLYSFF,OK slimfinder,15120800001,41,TL.SF,0.011,DNLI1_HUMAN__P18858,227,231,919,TLSSF,TL.SF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,TLSSF,OK slimfinder,15120800001,41,TL.SF,0.011,DPOD3_YEAST__P47110,340,344,350,TLESF,TL.SF,0,RecName: Full=DNA polymerase delta subunit 3;,TLESF,OK slimfinder,15120800001,41,TL.SF,0.011,RRM3_YEAST__P38766,37,41,723,TLSSF,TL.SF,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,TLSSF,OK slimfinder,15120800001,41,TL.SF,0.011,MSH6_HUMAN__P52701,6,10,1360,TLYSF,TL.SF,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,TLYSF,OK slimfinder,15120800001,41,TL.SF,0.011,UNG_HUMAN__P13051,6,10,313,TLYSF,TL.SF,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,TLYSF,OK slimfinder,15120800001,42,I..FF..K,0.011,DNLI1_HUMAN__P18858,5,12,919,IMSFFHPK,I..FF..K,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,IMSFFHPK,OK slimfinder,15120800001,42,I..FF..K,0.011,DPOD3_HUMAN__Q15054,459,466,466,ITGFFQRK,I..FF..K,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=DNA polymerase delta subunit p66;,ITGFFQRK,OK slimfinder,15120800001,42,I..FF..K,0.011,UNG_YEAST__P12887,24,31,359,IEDFFGTK,I..FF..K,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166}; Flags: Precursor;,IEDFFGTK,OK slimfinder,15120800001,42,I..FF..K,0.011,DPOD3_SCHPO__P30261,365,372,372,IMSFFGKK,I..FF..K,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=Cell division control protein 27;,IMSFFGKK,OK slimfinder,15120800001,43,Q.SI..FF,0.013,DNLI1_HUMAN__P18858,2,9,919,QRSIMSFF,Q.SI..FF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,QRSIMSFF,OK slimfinder,15120800001,43,Q.SI..FF,0.013,DPOD3_HUMAN__Q15054,456,463,466,QVSITGFF,Q.SI..FF,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=DNA polymerase delta subunit p66;,QVSITGFF,OK slimfinder,15120800001,43,Q.SI..FF,0.013,DPOD3_SCHPO__P30261,362,369,372,QKSIMSFF,Q.SI..FF,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=Cell division control protein 27;,QKSIMSFF,OK slimfinder,15120800001,44,"Q.T.{1,2}S.F",0.019,UNG_HUMAN__P13051,4,11,313,QKTLYSFF,Q.T..S.F,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,QKTLYSFF,OK slimfinder,15120800001,44,"Q.T.{1,2}S.F",0.019,MSH3_YEAST__P25336,4,10,1018,QPTISRF,Q.T.S.F,0,RecName: Full=DNA mismatch repair protein MSH3; AltName: Full=Mismatch-binding protein; Short=MBP; AltName: Full=MutS protein homolog 3;,QPTISRF,OK slimfinder,15120800001,44,"Q.T.{1,2}S.F",0.019,RRM3_YEAST__P38766,35,41,723,QQTLSSF,Q.T.S.F,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,QQTLSSF,OK slimfinder,15120800001,44,"Q.T.{1,2}S.F",0.019,RRM3_YEAST__P38766,35,42,723,QQTLSSFF,Q.T..S.F,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,QQTLSSFF,OK slimfinder,15120800001,44,"Q.T.{1,2}S.F",0.019,DPOD3_YEAST__P47110,338,345,350,QGTLESFF,Q.T..S.F,0,RecName: Full=DNA polymerase delta subunit 3;,QGTLESFF,OK slimfinder,15120800001,44,"Q.T.{1,2}S.F",0.019,DNMT1_HUMAN__P26358,164,171,1616,QTTITSHF,Q.T..S.F,0,RecName: Full=DNA (cytosine-5)-methyltransferase 1; Short=Dnmt1; EC=2.1.1.37; AltName: Full=CXXC-type zinc finger protein 9; AltName: Full=DNA methyltransferase HsaI; Short=DNA MTase HsaI; Short=M.HsaI; AltName: Full=MCMT;,QTTITSHF,OK slimfinder,15120800001,44,"Q.T.{1,2}S.F",0.019,MSH6_HUMAN__P52701,4,11,1360,QSTLYSFF,Q.T..S.F,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,QSTLYSFF,OK slimfinder,15120800001,45,"Q.T..S.{0,1}F",0.020,DPOD3_YEAST__P47110,338,344,350,QGTLESF,Q.T..SF,0,RecName: Full=DNA polymerase delta subunit 3;,QGTLESF,OK slimfinder,15120800001,45,"Q.T..S.{0,1}F",0.020,DPOD3_YEAST__P47110,338,345,350,QGTLESFF,Q.T..S.F,0,RecName: Full=DNA polymerase delta subunit 3;,QGTLESFF,OK slimfinder,15120800001,45,"Q.T..S.{0,1}F",0.020,MSH6_HUMAN__P52701,4,10,1360,QSTLYSF,Q.T..SF,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,QSTLYSF,OK slimfinder,15120800001,45,"Q.T..S.{0,1}F",0.020,MSH6_HUMAN__P52701,4,11,1360,QSTLYSFF,Q.T..S.F,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,QSTLYSFF,OK slimfinder,15120800001,45,"Q.T..S.{0,1}F",0.020,RRM3_YEAST__P38766,35,41,723,QQTLSSF,Q.T..SF,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,QQTLSSF,OK slimfinder,15120800001,45,"Q.T..S.{0,1}F",0.020,RRM3_YEAST__P38766,35,42,723,QQTLSSFF,Q.T..S.F,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,QQTLSSFF,OK slimfinder,15120800001,45,"Q.T..S.{0,1}F",0.020,UNG_HUMAN__P13051,4,10,313,QKTLYSF,Q.T..SF,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,QKTLYSF,OK slimfinder,15120800001,45,"Q.T..S.{0,1}F",0.020,UNG_HUMAN__P13051,4,11,313,QKTLYSFF,Q.T..S.F,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,QKTLYSFF,OK slimfinder,15120800001,45,"Q.T..S.{0,1}F",0.020,DNMT1_HUMAN__P26358,164,171,1616,QTTITSHF,Q.T..S.F,0,RecName: Full=DNA (cytosine-5)-methyltransferase 1; Short=Dnmt1; EC=2.1.1.37; AltName: Full=CXXC-type zinc finger protein 9; AltName: Full=DNA methyltransferase HsaI; Short=DNA MTase HsaI; Short=M.HsaI; AltName: Full=MCMT;,QTTITSHF,OK slimfinder,15120800001,46,L..FF,0.026,FEN1_YEAST__P26793,343,347,382,LDGFF,L..FF,0,RecName: Full=Flap endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; Short=FEN-1 {ECO:0000255|HAMAP-Rule:MF_03140}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=Flap structure-specific endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=RAD2 homolog nuclease 1; Short=RTH1 nuclease; AltName: Full=Structure-specific endonuclease RAD27;,LDGFF,Warning: DG slimfinder,15120800001,46,L..FF,0.026,FEN1_HUMAN__P39748,340,344,380,LDDFF,L..FF,0,RecName: Full=Flap endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; Short=FEN-1 {ECO:0000255|HAMAP-Rule:MF_03140}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=DNase IV; AltName: Full=Flap structure-specific endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=Maturation factor 1; Short=MF1; Short=hFEN-1;,LDDFF,OK slimfinder,15120800001,46,L..FF,0.026,RRM3_YEAST__P38766,38,42,723,LSSFF,L..FF,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,LSSFF,OK slimfinder,15120800001,46,L..FF,0.026,UNG_HUMAN__P13051,7,11,313,LYSFF,L..FF,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,LYSFF,OK slimfinder,15120800001,46,L..FF,0.026,DNLI1_YEAST__P04819,41,45,755,LARFF,L..FF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1; Flags: Precursor;,LARFF,OK slimfinder,15120800001,46,L..FF,0.026,DPOD3_YEAST__P47110,341,345,350,LESFF,L..FF,0,RecName: Full=DNA polymerase delta subunit 3;,LESFF,OK slimfinder,15120800001,46,L..FF,0.026,MSH6_HUMAN__P52701,7,11,1360,LYSFF,L..FF,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,LYSFF,OK slimfinder,15120800001,46,L..FF,0.026,MSH6_YEAST__Q03834,30,34,1242,LLSFF,L..FF,0,RecName: Full=DNA mismatch repair protein MSH6; AltName: Full=MutS protein homolog 6; AltName: Full=Postmeiotic segregation protein 3;,LLSFF,OK slimfinder,15120800001,46,L..FF,0.026,DNLI1_HUMAN__P18858,228,232,919,LSSFF,L..FF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,LSSFF,OK slimfinder,15120800001,47,[ILMV]..F[FY],0.037,DNLI1_YEAST__P04819,41,45,755,LARFF,[ILMV]..F[FY],0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1; Flags: Precursor;,LARFF,OK slimfinder,15120800001,47,[ILMV]..F[FY],0.037,DPOD3_HUMAN__Q15054,459,463,466,ITGFF,[ILMV]..F[FY],0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=DNA polymerase delta subunit p66;,ITGFF,OK slimfinder,15120800001,47,[ILMV]..F[FY],0.037,MSH3_YEAST__P25336,7,11,1018,ISRFF,[ILMV]..F[FY],0,RecName: Full=DNA mismatch repair protein MSH3; AltName: Full=Mismatch-binding protein; Short=MBP; AltName: Full=MutS protein homolog 3;,ISRFF,OK slimfinder,15120800001,47,[ILMV]..F[FY],0.037,FEN1_HUMAN__P39748,340,344,380,LDDFF,[ILMV]..F[FY],0,RecName: Full=Flap endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; Short=FEN-1 {ECO:0000255|HAMAP-Rule:MF_03140}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=DNase IV; AltName: Full=Flap structure-specific endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=Maturation factor 1; Short=MF1; Short=hFEN-1;,LDDFF,OK slimfinder,15120800001,47,[ILMV]..F[FY],0.037,FEN1_HUMAN__P39748,65,69,380,MGMFY,[ILMV]..F[FY],0,RecName: Full=Flap endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; Short=FEN-1 {ECO:0000255|HAMAP-Rule:MF_03140}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=DNase IV; AltName: Full=Flap structure-specific endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=Maturation factor 1; Short=MF1; Short=hFEN-1;,MGMFY,OK slimfinder,15120800001,47,[ILMV]..F[FY],0.037,DPOD3_SCHPO__P30261,365,369,372,IMSFF,[ILMV]..F[FY],0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=Cell division control protein 27;,IMSFF,OK slimfinder,15120800001,47,[ILMV]..F[FY],0.037,ERCC5_HUMAN__P28715,993,997,1186,IDSFF,[ILMV]..F[FY],0,RecName: Full=DNA repair protein complementing XP-G cells; EC=3.1.-.-; AltName: Full=DNA excision repair protein ERCC-5; AltName: Full=Xeroderma pigmentosum group G-complementing protein;,IDSFF,OK slimfinder,15120800001,47,[ILMV]..F[FY],0.037,UNG_YEAST__P12887,24,28,359,IEDFF,[ILMV]..F[FY],0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166}; Flags: Precursor;,IEDFF,OK slimfinder,15120800001,47,[ILMV]..F[FY],0.037,UNG_HUMAN__P13051,7,11,313,LYSFF,[ILMV]..F[FY],0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,LYSFF,OK slimfinder,15120800001,47,[ILMV]..F[FY],0.037,RFC1_YEAST__P38630,4,8,861,ISDFF,[ILMV]..F[FY],0,RecName: Full=Replication factor C subunit 1; Short=Replication factor C1; AltName: Full=Activator 1 95 kDa subunit; AltName: Full=Cell division control protein 44;,ISDFF,OK slimfinder,15120800001,47,[ILMV]..F[FY],0.037,RRM3_YEAST__P38766,38,42,723,LSSFF,[ILMV]..F[FY],0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,LSSFF,OK slimfinder,15120800001,47,[ILMV]..F[FY],0.037,RRM3_YEAST__P38766,712,716,723,VKDFY,[ILMV]..F[FY],0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,VKDFY,OK slimfinder,15120800001,47,[ILMV]..F[FY],0.037,DPOD3_YEAST__P47110,341,345,350,LESFF,[ILMV]..F[FY],0,RecName: Full=DNA polymerase delta subunit 3;,LESFF,OK slimfinder,15120800001,47,[ILMV]..F[FY],0.037,DNMT1_HUMAN__P26358,1018,1022,1616,VNKFY,[ILMV]..F[FY],0,RecName: Full=DNA (cytosine-5)-methyltransferase 1; Short=Dnmt1; EC=2.1.1.37; AltName: Full=CXXC-type zinc finger protein 9; AltName: Full=DNA methyltransferase HsaI; Short=DNA MTase HsaI; Short=M.HsaI; AltName: Full=MCMT;,VNKFY,OK slimfinder,15120800001,47,[ILMV]..F[FY],0.037,CDN1A_HUMAN__P38936,147,151,164,MTDFY,[ILMV]..F[FY],0,RecName: Full=Cyclin-dependent kinase inhibitor 1; AltName: Full=CDK-interacting protein 1; AltName: Full=Melanoma differentiation-associated protein 6; Short=MDA-6; AltName: Full=p21;,MTDFY,OK slimfinder,15120800001,47,[ILMV]..F[FY],0.037,MSH6_YEAST__Q03834,30,34,1242,LLSFF,[ILMV]..F[FY],0,RecName: Full=DNA mismatch repair protein MSH6; AltName: Full=MutS protein homolog 6; AltName: Full=Postmeiotic segregation protein 3;,LLSFF,OK slimfinder,15120800001,47,[ILMV]..F[FY],0.037,MSH6_HUMAN__P52701,7,11,1360,LYSFF,[ILMV]..F[FY],0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,LYSFF,OK slimfinder,15120800001,47,[ILMV]..F[FY],0.037,FEN1_YEAST__P26793,343,347,382,LDGFF,[ILMV]..F[FY],0,RecName: Full=Flap endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; Short=FEN-1 {ECO:0000255|HAMAP-Rule:MF_03140}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=Flap structure-specific endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=RAD2 homolog nuclease 1; Short=RTH1 nuclease; AltName: Full=Structure-specific endonuclease RAD27;,LDGFF,Warning: DG slimfinder,15120800001,47,[ILMV]..F[FY],0.037,FEN1_YEAST__P26793,66,70,382,MGMFY,[ILMV]..F[FY],0,RecName: Full=Flap endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; Short=FEN-1 {ECO:0000255|HAMAP-Rule:MF_03140}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=Flap structure-specific endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=RAD2 homolog nuclease 1; Short=RTH1 nuclease; AltName: Full=Structure-specific endonuclease RAD27;,MGMFY,OK slimfinder,15120800001,47,[ILMV]..F[FY],0.037,RAD2_YEAST__P07276,998,1002,1031,INEFF,[ILMV]..F[FY],0,RecName: Full=DNA repair protein RAD2; EC=3.1.-.-;,INEFF,OK slimfinder,15120800001,47,[ILMV]..F[FY],0.037,DNLI1_HUMAN__P18858,5,9,919,IMSFF,[ILMV]..F[FY],0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,IMSFF,OK slimfinder,15120800001,47,[ILMV]..F[FY],0.037,DNLI1_HUMAN__P18858,228,232,919,LSSFF,[ILMV]..F[FY],0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,LSSFF,OK slimfinder,15120800001,48,I..FF,0.048,DPOD3_HUMAN__Q15054,459,463,466,ITGFF,I..FF,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=DNA polymerase delta subunit p66;,ITGFF,OK slimfinder,15120800001,48,I..FF,0.048,MSH3_YEAST__P25336,7,11,1018,ISRFF,I..FF,0,RecName: Full=DNA mismatch repair protein MSH3; AltName: Full=Mismatch-binding protein; Short=MBP; AltName: Full=MutS protein homolog 3;,ISRFF,OK slimfinder,15120800001,48,I..FF,0.048,DPOD3_SCHPO__P30261,365,369,372,IMSFF,I..FF,0,RecName: Full=DNA polymerase delta subunit 3; AltName: Full=Cell division control protein 27;,IMSFF,OK slimfinder,15120800001,48,I..FF,0.048,ERCC5_HUMAN__P28715,993,997,1186,IDSFF,I..FF,0,RecName: Full=DNA repair protein complementing XP-G cells; EC=3.1.-.-; AltName: Full=DNA excision repair protein ERCC-5; AltName: Full=Xeroderma pigmentosum group G-complementing protein;,IDSFF,OK slimfinder,15120800001,48,I..FF,0.048,RFC1_YEAST__P38630,4,8,861,ISDFF,I..FF,0,RecName: Full=Replication factor C subunit 1; Short=Replication factor C1; AltName: Full=Activator 1 95 kDa subunit; AltName: Full=Cell division control protein 44;,ISDFF,OK slimfinder,15120800001,48,I..FF,0.048,UNG_YEAST__P12887,24,28,359,IEDFF,I..FF,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166}; Flags: Precursor;,IEDFF,OK slimfinder,15120800001,48,I..FF,0.048,RAD2_YEAST__P07276,998,1002,1031,INEFF,I..FF,0,RecName: Full=DNA repair protein RAD2; EC=3.1.-.-;,INEFF,OK slimfinder,15120800001,48,I..FF,0.048,DNLI1_HUMAN__P18858,5,9,919,IMSFF,I..FF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;,IMSFF,OK slimfinder,15120800001,49,KQ..L..FF,0.093,DNLI1_YEAST__P04819,37,45,755,KQATLARFF,KQ..L..FF,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1; Flags: Precursor;,KQATLARFF,OK slimfinder,15120800001,49,KQ..L..FF,0.093,DPOD3_YEAST__P47110,337,345,350,KQGTLESFF,KQ..L..FF,0,RecName: Full=DNA polymerase delta subunit 3;,KQGTLESFF,OK slimfinder,15120800001,49,KQ..L..FF,0.093,MSH6_YEAST__Q03834,26,34,1242,KQSSLLSFF,KQ..L..FF,0,RecName: Full=DNA mismatch repair protein MSH6; AltName: Full=MutS protein homolog 6; AltName: Full=Postmeiotic segregation protein 3;,KQSSLLSFF,OK slimfinder,15120800001,50,Q..L..F,0.098,DNLI1_YEAST__P04819,38,44,755,QATLARF,Q..L..F,0,RecName: Full=DNA ligase 1; EC=6.5.1.1; AltName: Full=DNA ligase I; AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1; Flags: Precursor;,QATLARF,OK slimfinder,15120800001,50,Q..L..F,0.098,FEN1_YEAST__P26793,340,346,382,QGRLDGF,Q..L..F,0,RecName: Full=Flap endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; Short=FEN-1 {ECO:0000255|HAMAP-Rule:MF_03140}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=Flap structure-specific endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=RAD2 homolog nuclease 1; Short=RTH1 nuclease; AltName: Full=Structure-specific endonuclease RAD27;,QGRLDGF,Warning: DG slimfinder,15120800001,50,Q..L..F,0.098,FEN1_HUMAN__P39748,337,343,380,QGRLDDF,Q..L..F,0,RecName: Full=Flap endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; Short=FEN-1 {ECO:0000255|HAMAP-Rule:MF_03140}; EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=DNase IV; AltName: Full=Flap structure-specific endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}; AltName: Full=Maturation factor 1; Short=MF1; Short=hFEN-1;,QGRLDDF,OK slimfinder,15120800001,50,Q..L..F,0.098,RRM3_YEAST__P38766,35,41,723,QQTLSSF,Q..L..F,0,RecName: Full=ATP-dependent DNA helicase RRM3 {ECO:0000255|HAMAP-Rule:MF_03177}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_03177}; AltName: Full=Regulation of Ty1 transposition protein 104; AltName: Full=rDNA recombination mutation protein 3 {ECO:0000255|HAMAP-Rule:MF_03177};,QQTLSSF,OK slimfinder,15120800001,50,Q..L..F,0.098,UNG_HUMAN__P13051,4,10,313,QKTLYSF,Q..L..F,0,RecName: Full=Uracil-DNA glycosylase {ECO:0000255|HAMAP-Rule:MF_03166}; Short=UDG {ECO:0000255|HAMAP-Rule:MF_03166}; EC=3.2.2.27 {ECO:0000255|HAMAP-Rule:MF_03166};,QKTLYSF,OK slimfinder,15120800001,50,Q..L..F,0.098,DPOD3_YEAST__P47110,338,344,350,QGTLESF,Q..L..F,0,RecName: Full=DNA polymerase delta subunit 3;,QGTLESF,OK slimfinder,15120800001,50,Q..L..F,0.098,MSH6_HUMAN__P52701,4,10,1360,QSTLYSF,Q..L..F,0,RecName: Full=DNA mismatch repair protein Msh6; Short=hMSH6; AltName: Full=G/T mismatch-binding protein; Short=GTBP; Short=GTMBP; AltName: Full=MutS-alpha 160 kDa subunit; Short=p160;,QSTLYSF,OK slimfinder,15120800001,50,Q..L..F,0.098,MSH6_YEAST__Q03834,27,33,1242,QSSLLSF,Q..L..F,0,RecName: Full=DNA mismatch repair protein MSH6; AltName: Full=MutS protein homolog 6; AltName: Full=Postmeiotic segregation protein 3;,QSSLLSF,OK