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#LOG	00:00:00	Activity Log for SLiMSuite V1.5.2: Wed Dec  9 00:29:07 2015
#DIR	00:00:00	Run from directory: /srv/slimsuite/logs/prod
#ARG	00:00:00	Commandline arguments: run ip=129.94.133.155 slimfinder&uniprotid=CTBP1&dismask=T&runid=CtBP1-DisMask&jobid=15120900002
#VIO	00:00:00	Verbosity: -1; Interactivity: -1.
#PROG	00:00:00	SLiMFinder V5.2.3: Short Linear Motif Finder
#CMD	00:00:00	Full SLiMFinder CmdList: proglog=F iucut=0.2 usegopher=T protscores=T megablam=F orthdb=qfo_ref.2015-04.Eukaryota.fas sourcedate=2015-04-15 walltime=0 maxgapx=3 rest=format uniprotid=CTBP1.hint.acc dismask=T runid=CtBP1-DisMask jobid=15120900002 resfile=slimfinder.csv savespace=0 targz=F megaslim=seqin basefile=slimfinder
#DB 	00:00:00	/srv/slimsuite/data/orthdb/qfo_ref.2015-04/qfo_ref.2015-04.Eukaryota.fas already formatted. (Force = False).
#DB 	00:00:00	/srv/slimsuite/data/orthdb/qfo_ref.2015-04/qfo_ref.2015-04.Eukaryota.fas already formatted. (Force = False).
#ALPH	00:00:00	Alphabet: A C D E F G H I K L M N P Q R S T V W Y
#WARN	00:00:00	NOTE: cloudfix=F. Be wary of ambiguity over-predictions.
#URL	00:00:06	Extracting 20 AccNum from http://www.uniprot.org/uniprot/: 20 read & extracted; 0 failed; 0 duplicates.
#DAT	00:00:06	Extracting entries from slimfinder.dat: 20 read, 20 extracted.
#SEQ	00:00:06	20 sequences loaded from /srv/slimsuite/scratch/prod/slimfinder/15120900002/slimfinder.dat (Format: uniprot).
#FAS	00:00:06	20 Sequences output to /srv/slimsuite/scratch/prod/slimfinder/15120900002/slimfinder.fas.     
#UPC	00:00:06	No UPC file found.
#FAS	00:00:06	20 Sequences output to /srv/slimsuite/scratch/prod/slimfinder/15120900002/slimfinder.slimdb.     
#DICT	00:00:06	Made "short" seqName dictionary: 20 seq; 20 keys.
#DB 	00:00:06	/share/apps/blast+/2.2.29/bin/makeblastdb -in "/srv/slimsuite/scratch/prod/slimfinder/15120900002/slimfinder.slimdb" -out "/srv/slimsuite/scratch/prod/slimfinder/15120900002/slimfinder.slimdb" -title "/srv/slimsuite/scratch/prod/slimfinder/15120900002/slimfinder.slimdb" -parse_seqids -dbtype prot
#SYS	00:00:06	/share/apps/blast+/2.2.29/bin/blastp -query /srv/slimsuite/scratch/prod/slimfinder/15120900002/slimfinder.slimdb -db /srv/slimsuite/scratch/prod/slimfinder/15120900002/slimfinder.slimdb -out /srv/slimsuite/scratch/prod/slimfinder/15120900002/slimfinder.self.blast -seg yes -comp_based_stats F -soft_masking true -evalue 1.000000e-04 -num_descriptions 20 -num_alignments 20
#INDEX	00:00:07	Indexed "Search" on "Query": 20 unique; 0 missing entries
#CLUST	00:00:07	16 clusters generated from 20 keys (maxdis=1.00)
#DICT	00:00:07	Made "short" seqName dictionary: 20 seq; 20 keys.
#MST	00:00:07	MST for 20 sequences = 19.049.
#UP	00:00:07	slimfinder: 20 Seq; 16 UPC; 19.049 MST; blaste=1.00e-04, blastcf=F, blastf=T
#MAT	00:00:07	slimfinder GABLAM Distance matrix out to /srv/slimsuite/scratch/prod/slimfinder/15120900002/slimfinder.dis.tdt (text format).
#MIN	00:00:07	AmbOcc 0.05 & 16 UP => AmbOcc 2 UPC.
#MIN	00:00:07	MinOcc 0.05 & 16 UP => MinOcc 3 UPC.
#DIS	00:00:07	Disorder score file: /srv/slimsuite/scratch/prod/slimfinder/15120900002/slimfinder.iupred.txt
#MASK	00:00:07	ATX1L_HUMAN__P0C7T5 masked 21 ordered regions. (107 X added.)
#MASK	00:00:07	BRCA1_HUMAN__P38398 masked 20 ordered regions. (268 X added.)
#MASK	00:00:07	CBX4_HUMAN__O00257 masked 3 ordered regions. (54 X added.)
#MASK	00:00:07	CHD3_HUMAN__Q12873 masked 58 ordered regions. (747 X added.)
#MASK	00:00:07	COM1_HUMAN__Q99708 masked 14 ordered regions. (46 X added.)
#MASK	00:00:07	CTBP1_HUMAN__Q13363 masked 13 ordered regions. (221 X added.)
#MASK	00:00:07	CTNA1_HUMAN__P35221 masked 33 ordered regions. (329 X added.)
#MASK	00:00:07	HDAC2_HUMAN__Q92769 masked 18 ordered regions. (240 X added.)
#MASK	00:00:07	HIC1_HUMAN__Q14526 masked 22 ordered regions. (221 X added.)
#MASK	00:00:07	IKZF1_HUMAN__Q13422 masked 8 ordered regions. (110 X added.)
#MASK	00:00:07	ITF2_HUMAN__P15884 masked 3 ordered regions. (30 X added.)
#MASK	00:00:07	KAT2B_HUMAN__Q92831 masked 24 ordered regions. (408 X added.)
#MASK	00:00:07	LCORL_HUMAN__Q8N3X6 masked 22 ordered regions. (117 X added.)
#MASK	00:00:07	LCOR_HUMAN__Q96JN0 masked 7 ordered regions. (17 X added.)
#MASK	00:00:07	MDS1_HUMAN__Q13465 masked 3 ordered regions. (35 X added.)
#MASK	00:00:07	NOL4L_HUMAN__Q96MY1 masked 2 ordered regions. (27 X added.)
#MASK	00:00:07	NRIP1_HUMAN__P48552 masked 10 ordered regions. (26 X added.)
#MASK	00:00:07	RBBP5_HUMAN__Q15291 masked 14 ordered regions. (234 X added.)
#MASK	00:00:07	SOBP_HUMAN__A7XYQ1 masked 7 ordered regions. (143 X added.)
#MASK	00:00:07	ZN219_HUMAN__Q9P2Y4 masked 15 ordered regions. (96 X added.)
#IUPRED	00:00:07	iupred disorder score lists output to /srv/slimsuite/scratch/prod/slimfinder/15120900002/slimfinder.iupred.txt for 7 sequences.
#FTMASK	00:00:07	FTMask: None
#MASK	00:00:07	Masked ATX1L_HUMAN__P0C7T5 "low complexity" regions. (9 X added.)
#MASK	00:00:07	Masked BRCA1_HUMAN__P38398 "low complexity" regions. (6 X added.)
#MASK	00:00:07	Masked CBX4_HUMAN__O00257 "low complexity" regions. (21 X added.)
#MASK	00:00:07	Masked CHD3_HUMAN__Q12873 "low complexity" regions. (36 X added.)
#MASK	00:00:07	Masked COM1_HUMAN__Q99708 "low complexity" regions. (3 X added.)
#MASK	00:00:07	Masked CTNA1_HUMAN__P35221 "low complexity" regions. (3 X added.)
#MASK	00:00:07	Masked HIC1_HUMAN__Q14526 "low complexity" regions. (33 X added.)
#MASK	00:00:07	Masked ITF2_HUMAN__P15884 "low complexity" regions. (10 X added.)
#MASK	00:00:07	Masked KAT2B_HUMAN__Q92831 "low complexity" regions. (19 X added.)
#MASK	00:00:07	Masked LCORL_HUMAN__Q8N3X6 "low complexity" regions. (9 X added.)
#MASK	00:00:07	Masked NOL4L_HUMAN__Q96MY1 "low complexity" regions. (14 X added.)
#MASK	00:00:07	Masked NRIP1_HUMAN__P48552 "low complexity" regions. (6 X added.)
#MASK	00:00:07	Masked RBBP5_HUMAN__Q15291 "low complexity" regions. (3 X added.)
#MASK	00:00:07	Masked SOBP_HUMAN__A7XYQ1 "low complexity" regions. (23 X added.)
#MASK	00:00:07	Masked ZN219_HUMAN__Q9P2Y4 "low complexity" regions. (35 X added.)
#MASK	00:00:07	MetMask: 20 N-terminal Ms masked
#MASK	00:00:07	Masked HDAC2_HUMAN__Q92769 position-specific AAs. (1 X added.)
#MASK	00:00:07	Masked SOBP_HUMAN__A7XYQ1 position-specific AAs. (1 X added.)
#MASK	00:00:07	slimfinder: Masking of input sequences complete.
#SPACE	00:00:07	Motif Space, 2 positions: 1,200 motifs
#SPACE	00:00:07	Motif Space, 3 positions: 72,000 motifs
#SPACE	00:00:07	Motif Space, 4 positions: 4,320,000 motifs
#SPACE	00:00:07	Motif Space, 5 positions: 259,200,000 motifs
#DIM	00:00:07	Read dimers from 20 seq: 1,241 dimers
#DIM	00:00:07	Reducing dimers: 1,180 >= 2 of 16 UPC 
#SLIM	00:00:07	Selecting 2aa SLiMs: 1,180 >= 2 of 16 UPC
#AMB	00:00:07	Adding Wildcard ambiguity: 100.0% (0 amb motifs)
#AMB	00:00:07	Adding Degeneracy ambiguity: 100.0% (0 amb motifs)
#SLIM	00:00:46	Extending 3aa SLiMs >= 2 of 16 UPC: 21,137 SLiMs
#AMB	00:00:56	Adding Wildcard ambiguity: 100.0% (6,230 amb motifs)
#AMB	00:01:35	Adding Degeneracy ambiguity: 100.0% (11,317 amb motifs)
#SLIM	00:03:38	Extending 4aa SLiMs >= 2 of 16 UPC: 20,241 SLiMs
#AMB	00:03:45	Adding Wildcard ambiguity: 100.0% (5,200 amb motifs)
#AMB	00:04:00	Adding Degeneracy ambiguity: 100.0% (7,266 amb motifs)
#SLIM	00:05:30	Extending 5aa SLiMs >= 2 of 16 UPC: 4,889 SLiMs
#AMB	00:05:32	Adding Wildcard ambiguity: 100.0% (205 amb motifs)
#AMB	00:05:38	Adding Degeneracy ambiguity: 100.0% (108 amb motifs)
#SLIM	00:05:38	77,773 SLiMs >= 2 of 16 UPC
#SAVE	00:05:46	SLiMFinder Intermediate saved as /srv/slimsuite/scratch/prod/slimfinder/15120900002/slimfinder.l5w2o2a3.FreqDisComp-5-8.pickle (Python pickle).
#GZIP	00:05:47	/srv/slimsuite/scratch/prod/slimfinder/15120900002/slimfinder.l5w2o2a3.FreqDisComp-5-8.pickle zipped.
#SLIM	00:05:48	Filtering 77,773 SLiMs: 40,608 retained.
#PROB	00:06:08	Calculating [Sig] SLiM Probabilities (Sig<=0.10) complete: 0 ranked SLiMs.
#COMB	00:06:08	Combined Occurrence Attributes complete.
#CLOUD	00:06:08	Making "Motif Clouds" for 0 Sig Motifs: 0 Clouds
#FAS	00:06:08	20 Sequences output to /srv/slimsuite/scratch/prod/slimfinder/15120900002/slimfinder.l5w2o2a3.CtBP1-DisMask.masked.fas.     
#EXTRA	00:06:08	No SLiMs for additional outputs
#RES	00:06:08	SLiMFinder results output to /srv/slimsuite/scratch/prod/slimfinder/15120900002/slimfinder.csv and /srv/slimsuite/scratch/prod/slimfinder/15120900002/slimfinder.occ.csv.
#RES	00:06:08	Additional dataset results output to /srv/slimsuite/scratch/prod/slimfinder/15120900002/slimfinder.*
#END	00:06:08	No SLiMs for output. Try relaxing probability threshold (probcut) and setting number of SLiMs to return (topranks) > 0.
#WARN	00:06:08	1 warning messages: check log for details.
#LOG	00:06:08	SLiMFinder V5.2.3 End: Wed Dec  9 00:35:16 2015
#JOBID	00:06:08	15120900002
#REST	00:06:08	URL for future retrieval: http://rest.slimsuite.unsw.edu.au/retrieve&jobid=15120900002&rest=format&password=None