MotifFile	SearchDB	Name1	Name2	Motif1	Motif2	Sim1	Sim2	Match	MatchPos	MatchIC	NormIC	CoreIC	Score	Info1	Info2	Desc1	Desc2
comparimotif	elm2015	slimfinder#15120800001#1#Q..[IL].SFF	CLV_PCSK_SKI1_1	Q..[IL].SFF	[RK].[AILMFV][LTKF].	Complex Overlap	Complex Overlap	[kr]s[afilmv][fklt]	2	0.939	0.550	0.249	1.100	4.77	1.71	slimfinder#15120800001#1#Q..[IL].SFF	Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#1#Q..[IL].SFF	DOC_USP7_1	Q..[IL].SFF	[PA][^P][^FYWIL]S[^P]	Complex Parent	Complex Subsequence	[ap][^p][acdeghkmnpqrstv]S[^p]	3	1.034	0.545	0.285	1.634	4.77	1.90	slimfinder#15120800001#1#Q..[IL].SFF	The USP7 NTD domain binding motif variant based on the MDM2 and P53 interactions. [10 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#1#Q..[IL].SFF	LIG_14-3-3_3	Q..[IL].SFF	[RHK][STALV].([ST]).[PESRDIFTQ]	Ugly Parent	Ugly Subsequence	[hkr][ailstv].[st]f[defipqrst]	3	1.437	0.674	0.326	2.023	4.77	2.13	slimfinder#15120800001#1#Q..[IL].SFF	Consensus derived from reported natural interactors which do not match the Mode 1 and Mode 2 ligands. [22 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#1#Q..[IL].SFF	LIG_LIR_Apic_2	Q..[IL].SFF	[EDST].{0,2}[WFY]..P	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.539	0.390	1.079	4.77	2.17	slimfinder#15120800001#1#Q..[IL].SFF	Apicomplexa-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#1#Q..[IL].SFF	LIG_LIR_Gen_1	Q..[IL].SFF	[EDST].{0,2}[WFY]..[ILV]	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.649	0.390	1.298	4.77	1.80	slimfinder#15120800001#1#Q..[IL].SFF	Canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [21 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#1#Q..[IL].SFF	LIG_LIR_Nem_3	Q..[IL].SFF	[EDST].{0,2}[WFY]..[ILVFY]	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.717	0.390	1.433	4.77	1.63	slimfinder#15120800001#1#Q..[IL].SFF	Nematode-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#1#Q..[IL].SFF	LIG_PCNA_PIPBox_1_a	Q..[IL].SFF	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	Q.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	5	3.070	0.971	0.632	4.855	4.77	3.16	slimfinder#15120800001#1#Q..[IL].SFF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#1#Q..[IL].SFF	LIG_PCNA_PIPBox_1_b	Q..[IL].SFF	^.{0,3}.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	q.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	4	2.070	0.655	0.426	2.619	4.77	3.16	slimfinder#15120800001#1#Q..[IL].SFF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 2/2
comparimotif	elm2015	slimfinder#15120800001#1#Q..[IL].SFF	LIG_PDZ_Class_1	Q..[IL].SFF	...[ST].[ACVILF]$	Variant Overlap	Degenerate Overlap	.[il].[st]f[acfilv]	2	1.171	0.539	0.311	1.079	4.77	2.17	slimfinder#15120800001#1#Q..[IL].SFF	The C-terminal class 1 PDZ-binding motif is classically represented by a pattern like (ST)X(VIL)* [48 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#1#Q..[IL].SFF	MOD_NEK2_1	Q..[IL].SFF	[FLM][^P][^P]([ST])[^DEP][^DE]	Complex Parent	Complex Subsequence	[flm][^p][^p][st][^ped][^ed]	4	0.875	0.574	0.198	2.295	4.77	1.53	slimfinder#15120800001#1#Q..[IL].SFF	NEK2 phosphorylation motif with preferred Phe, Leu or Met in the -3 position to compensate for less favorable residues in the +1 and +2 position. [3 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#1#Q..[IL].SFF	MOD_NEK2_2	Q..[IL].SFF	[WYPCAG][^P][^P]([ST])[IFCVML][KRHYF]	Complex Parent	Complex Subsequence	[acgpwy][^p][^p][st][cfilmv][fhkry]	4	1.650	0.798	0.394	3.190	4.77	2.07	slimfinder#15120800001#1#Q..[IL].SFF	NEK2 phosphorylation motif with specific set of residues in the +1 and +2 position to compensate for less favorable residues in the -3 position. [0 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#1#Q..[IL].SFF	TRG_Golgi_diPhe_1	Q..[IL].SFF	Q.{6,6}FF.{6,7}$	Variant Subsequence	Degenerate Parent	Q..[il].sfF	2	2.000	0.500	0.419	1.000	4.77	4.00	slimfinder#15120800001#1#Q..[IL].SFF	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#10#Q..[IL]..FF	CLV_PCSK_SKI1_1	Q..[IL]..FF	[RK].[AILMFV][LTKF].	Complex Overlap	Complex Overlap	[kr].[afilmv][fklt]	2	0.939	0.550	0.339	1.100	3.77	1.71	slimfinder#15120800001#10#Q..[IL]..FF	Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#10#Q..[IL]..FF	DEG_CRL4_CDT2_1_a	Q..[IL]..FF	..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Overlap	Complex Overlap	..[ilmv][st][den][fy][fy]	3	2.074	0.550	0.497	1.651	3.77	5.82	slimfinder#15120800001#10#Q..[IL]..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 1/4
comparimotif	elm2015	slimfinder#15120800001#10#Q..[IL]..FF	DEG_CRL4_CDT2_1_b	Q..[IL]..FF	..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Overlap	Complex Overlap	..[ilmv][st][den][fy][fy]	3	2.074	0.550	0.497	1.651	3.77	5.05	slimfinder#15120800001#10#Q..[IL]..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 2/4
comparimotif	elm2015	slimfinder#15120800001#10#Q..[IL]..FF	DEG_CRL4_CDT2_1_c	Q..[IL]..FF	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq]..[ilmv][st][den][fy][fy]	4	2.843	0.754	0.550	3.018	3.77	6.59	slimfinder#15120800001#10#Q..[IL]..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#10#Q..[IL]..FF	DEG_CRL4_CDT2_1_d	Q..[IL]..FF	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq]..[ilmv][st][den][fy][fy]	4	2.843	0.754	0.550	3.018	3.77	5.82	slimfinder#15120800001#10#Q..[IL]..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#10#Q..[IL]..FF	DEG_CRL4_CDT2_2_c	Q..[IL]..FF	[NQ]..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq]..[ilmv]t[den][fhmy][fmy]	4	2.476	0.657	0.458	2.628	3.77	6.45	slimfinder#15120800001#10#Q..[IL]..FF	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#10#Q..[IL]..FF	DEG_CRL4_CDT2_2_d	Q..[IL]..FF	[NQ]..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq]..[ilmv]t[den][fhmy][fmy]	4	2.476	0.657	0.458	2.628	3.77	5.68	slimfinder#15120800001#10#Q..[IL]..FF	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#10#Q..[IL]..FF	LIG_PCNA_PIPBox_1_a	Q..[IL]..FF	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	Q.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	4	2.900	0.917	0.719	3.668	3.77	3.16	slimfinder#15120800001#10#Q..[IL]..FF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#10#Q..[IL]..FF	LIG_PCNA_PIPBox_1_b	Q..[IL]..FF	^.{0,3}.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	q.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	3	1.900	0.601	0.471	1.803	3.77	3.16	slimfinder#15120800001#10#Q..[IL]..FF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 2/2
comparimotif	elm2015	slimfinder#15120800001#10#Q..[IL]..FF	TRG_Golgi_diPhe_1	Q..[IL]..FF	Q.{6,6}FF.{6,7}$	Variant Subsequence	Degenerate Parent	Q..[il]..fF	2	2.000	0.531	0.531	1.061	3.77	4.00	slimfinder#15120800001#10#Q..[IL]..FF	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#11#Q..I..FF..K	CLV_PCSK_SKI1_1	Q..I..FF..K	[RK].[AILMFV][LTKF].	Complex Parent	Complex Subsequence	[kr].[afilmv][fklt].	2	0.939	0.550	0.339	1.100	5.00	1.71	slimfinder#15120800001#11#Q..I..FF..K	Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#11#Q..I..FF..K	DEG_CRL4_CDT2_1_a	Q..I..FF..K	..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Overlap	Complex Overlap	..[ilmv][st][den][fy][fy]..[kr]	4	2.843	0.569	0.526	2.274	5.00	5.82	slimfinder#15120800001#11#Q..I..FF..K	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 1/4
comparimotif	elm2015	slimfinder#15120800001#11#Q..I..FF..K	DEG_CRL4_CDT2_1_b	Q..I..FF..K	..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Overlap	Complex Overlap	..[ilmv][st][den][fy][fy]..[kr]	4	2.843	0.569	0.526	2.274	5.00	5.05	slimfinder#15120800001#11#Q..I..FF..K	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 2/4
comparimotif	elm2015	slimfinder#15120800001#11#Q..I..FF..K	DEG_CRL4_CDT2_1_c	Q..I..FF..K	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq]..[ilmv][st][den][fy][fy]..[kr]	5	3.612	0.722	0.564	3.612	5.00	6.59	slimfinder#15120800001#11#Q..I..FF..K	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#11#Q..I..FF..K	DEG_CRL4_CDT2_1_d	Q..I..FF..K	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq]..[ilmv][st][den][fy][fy]..[kr]	5	3.612	0.722	0.564	3.612	5.00	5.82	slimfinder#15120800001#11#Q..I..FF..K	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#11#Q..I..FF..K	DEG_CRL4_CDT2_2_b	Q..I..FF..K	..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][^DE]	Complex Overlap	Complex Overlap	..[ilmv]t[den][fhmy][fmy]..[kr]	4	2.476	0.504	0.440	2.016	5.00	4.91	slimfinder#15120800001#11#Q..I..FF..K	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 2/4
comparimotif	elm2015	slimfinder#15120800001#11#Q..I..FF..K	DEG_CRL4_CDT2_2_c	Q..I..FF..K	[NQ]..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq]..[ilmv]t[den][fhmy][fmy]..[kr]	5	3.245	0.649	0.489	3.245	5.00	6.45	slimfinder#15120800001#11#Q..I..FF..K	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#11#Q..I..FF..K	DEG_CRL4_CDT2_2_d	Q..I..FF..K	[NQ]..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq]..[ilmv]t[den][fhmy][fmy]..[kr]	5	3.245	0.649	0.489	3.245	5.00	5.68	slimfinder#15120800001#11#Q..I..FF..K	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#11#Q..I..FF..K	LIG_IQ	Q..I..FF..K	...[SACLIVTM]..[ILVMFCT]Q.{3,3}[RK].{4,5}[RKQ]..	Complex Subsequence	Complex Parent	Q..i[kr].ff..[kqr]	2	1.633	0.534	0.283	1.068	5.00	3.06	slimfinder#15120800001#11#Q..I..FF..K	Calmodulin binding helical peptide motif [40 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#11#Q..I..FF..K	LIG_PCNA_PIPBox_1_a	Q..I..FF..K	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Parent	Complex Subsequence	Q.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]..	4	2.900	0.917	0.680	3.668	5.00	3.16	slimfinder#15120800001#11#Q..I..FF..K	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#11#Q..I..FF..K	LIG_PCNA_PIPBox_1_b	Q..I..FF..K	^.{0,3}.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Overlap	Complex Overlap	q.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]..	3	1.900	0.601	0.446	1.803	5.00	3.16	slimfinder#15120800001#11#Q..I..FF..K	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 2/2
comparimotif	elm2015	slimfinder#15120800001#11#Q..I..FF..K	TRG_Golgi_diPhe_1	Q..I..FF..K	Q.{6,6}FF.{6,7}$	Complex Subsequence	Complex Parent	Q..i..fFf.k	2	2.000	0.500	0.333	1.000	5.00	4.00	slimfinder#15120800001#11#Q..I..FF..K	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#12#Q.T..SFF	CLV_PCSK_SKI1_1	Q.T..SFF	[RK].[AILMFV][LTKF].	Complex Overlap	Complex Overlap	[kr]s[afilmv][fklt]	2	0.939	0.550	0.249	1.100	5.00	1.71	slimfinder#15120800001#12#Q.T..SFF	Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#12#Q.T..SFF	DOC_CKS1_1	Q.T..SFF	[MPVLIFWYQ].(T)P..	Complex Parent	Complex Subsequence	[filmpqvwy].Tp.s	2	1.267	0.559	0.317	1.118	5.00	2.27	slimfinder#15120800001#12#Q.T..SFF	Phospho-dependent motif that mediates docking of CDK substrates and regulators to cyclin-CDK-bound Cks1. [8 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#12#Q.T..SFF	LIG_LIR_Apic_2	Q.T..SFF	[EDST].{0,2}[WFY]..P	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.539	0.390	1.079	5.00	2.17	slimfinder#15120800001#12#Q.T..SFF	Apicomplexa-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#12#Q.T..SFF	LIG_LIR_Gen_1	Q.T..SFF	[EDST].{0,2}[WFY]..[ILV]	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.649	0.390	1.298	5.00	1.80	slimfinder#15120800001#12#Q.T..SFF	Canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [21 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#12#Q.T..SFF	LIG_LIR_Nem_3	Q.T..SFF	[EDST].{0,2}[WFY]..[ILVFY]	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.717	0.390	1.433	5.00	1.63	slimfinder#15120800001#12#Q.T..SFF	Nematode-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#12#Q.T..SFF	LIG_PCNA_PIPBox_1_a	Q.T..SFF	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	Q.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	5	2.512	0.794	0.444	3.972	5.00	3.16	slimfinder#15120800001#12#Q.T..SFF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#12#Q.T..SFF	LIG_PDZ_Class_1	Q.T..SFF	...[ST].[ACVILF]$	Variant Overlap	Degenerate Overlap	t..[st]f[acfilv]	2	1.171	0.539	0.293	1.079	5.00	2.17	slimfinder#15120800001#12#Q.T..SFF	The C-terminal class 1 PDZ-binding motif is classically represented by a pattern like (ST)X(VIL)* [48 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#12#Q.T..SFF	MOD_NEK2_1	Q.T..SFF	[FLM][^P][^P]([ST])[^DEP][^DE]	Complex Overlap	Complex Overlap	[^p][^p][st][^ped][^ed]	2	0.786	0.515	0.373	1.030	5.00	1.53	slimfinder#15120800001#12#Q.T..SFF	NEK2 phosphorylation motif with preferred Phe, Leu or Met in the -3 position to compensate for less favorable residues in the +1 and +2 position. [3 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#12#Q.T..SFF	MOD_PLK	Q.T..SFF	.[DE].([ST])[ILFWMVA]..	Complex Overlap	Complex Overlap	t[de].[st][afilmvw]f	2	1.119	0.593	0.235	1.186	5.00	1.89	slimfinder#15120800001#12#Q.T..SFF	Site phosphorylated by the Polo-like kinase. [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#12#Q.T..SFF	TRG_Golgi_diPhe_1	Q.T..SFF	Q.{6,6}FF.{6,7}$	Variant Subsequence	Degenerate Parent	Q.t..sfF	2	2.000	0.500	0.400	1.000	5.00	4.00	slimfinder#15120800001#12#Q.T..SFF	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#13#[IL].SFF	CLV_PCSK_SKI1_1	[IL].SFF	[RK].[AILMFV][LTKF].	Complex Overlap	Complex Overlap	[kr]s[afilmv][fklt]	2	0.939	0.550	0.249	1.100	3.77	1.71	slimfinder#15120800001#13#[IL].SFF	Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#13#[IL].SFF	DEG_SCF_COI1_1	[IL].SFF	..[RK][RK].SL..F[FLM].[RK]R[HRK].[RK].	Complex Subsequence	Complex Parent	[il].sF[flm]	3	2.402	0.637	0.600	1.912	3.77	8.34	slimfinder#15120800001#13#[IL].SFF	This degron motif is present in JAZ transcriptional repressor proteins and binds to the COI1 F-box protein of the SCF E3 ubiquitin ligase in a jasmonate-dependent manner. [9 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#13#[IL].SFF	DOC_USP7_1	[IL].SFF	[PA][^P][^FYWIL]S[^P]	Complex Overlap	Complex Overlap	[^p][acdeghkmnpqrstv]S[^p]	3	1.034	0.545	0.361	1.634	3.77	1.90	slimfinder#15120800001#13#[IL].SFF	The USP7 NTD domain binding motif variant based on the MDM2 and P53 interactions. [10 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#13#[IL].SFF	LIG_14-3-3_3	[IL].SFF	[RHK][STALV].([ST]).[PESRDIFTQ]	Ugly Subsequence	Ugly Parent	[ailstv].[st]f[defipqrst]	3	1.437	0.674	0.381	2.023	3.77	2.13	slimfinder#15120800001#13#[IL].SFF	Consensus derived from reported natural interactors which do not match the Mode 1 and Mode 2 ligands. [22 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#13#[IL].SFF	LIG_LIR_Apic_2	[IL].SFF	[EDST].{0,2}[WFY]..P	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.539	0.390	1.079	3.77	2.17	slimfinder#15120800001#13#[IL].SFF	Apicomplexa-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#13#[IL].SFF	LIG_LIR_Gen_1	[IL].SFF	[EDST].{0,2}[WFY]..[ILV]	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.649	0.390	1.298	3.77	1.80	slimfinder#15120800001#13#[IL].SFF	Canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [21 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#13#[IL].SFF	LIG_LIR_Nem_3	[IL].SFF	[EDST].{0,2}[WFY]..[ILVFY]	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.717	0.390	1.433	3.77	1.63	slimfinder#15120800001#13#[IL].SFF	Nematode-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#13#[IL].SFF	LIG_PCNA_PIPBox_1_a	[IL].SFF	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	[ilm][^p][acdegkmnqrst][fhm][fmy]	4	2.070	0.655	0.547	2.619	3.77	3.16	slimfinder#15120800001#13#[IL].SFF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#13#[IL].SFF	LIG_PCNA_PIPBox_1_b	[IL].SFF	^.{0,3}.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	[ilm][^p][acdegkmnqrst][fhm][fmy]	4	2.070	0.655	0.547	2.619	3.77	3.16	slimfinder#15120800001#13#[IL].SFF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 2/2
comparimotif	elm2015	slimfinder#15120800001#13#[IL].SFF	LIG_PDZ_Class_1	[IL].SFF	...[ST].[ACVILF]$	Variant Subsequence	Degenerate Parent	[il].[st]f[acfilv]	2	1.171	0.539	0.311	1.079	3.77	2.17	slimfinder#15120800001#13#[IL].SFF	The C-terminal class 1 PDZ-binding motif is classically represented by a pattern like (ST)X(VIL)* [48 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#13#[IL].SFF	MOD_NEK2_1	[IL].SFF	[FLM][^P][^P]([ST])[^DEP][^DE]	Complex Subsequence	Complex Parent	[^p][^p][st][^ped][^ed]	4	0.875	0.574	0.231	2.295	3.77	1.53	slimfinder#15120800001#13#[IL].SFF	NEK2 phosphorylation motif with preferred Phe, Leu or Met in the -3 position to compensate for less favorable residues in the +1 and +2 position. [3 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#13#[IL].SFF	MOD_NEK2_2	[IL].SFF	[WYPCAG][^P][^P]([ST])[IFCVML][KRHYF]	Complex Subsequence	Complex Parent	[^p][^p][st][cfilmv][fhkry]	4	1.650	0.798	0.436	3.190	3.77	2.07	slimfinder#15120800001#13#[IL].SFF	NEK2 phosphorylation motif with specific set of residues in the +1 and +2 position to compensate for less favorable residues in the -3 position. [0 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#13#[IL].SFF	TRG_Golgi_diPhe_1	[IL].SFF	Q.{6,6}FF.{6,7}$	Variant Subsequence	Degenerate Parent	[il].sFF	2	2.000	0.531	0.531	1.061	3.77	4.00	slimfinder#15120800001#13#[IL].SFF	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	CLV_PCSK_SKI1_1	TL.{0,1}S.{0,1}FF	[RK].[AILMFV][LTKF].	Complex Overlap	Complex Overlap	[kr]s[afilmv][fklt]	2	0.939	0.550	0.249	1.100	5.00	1.71	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	DEG_CRL4_CDT2_1_a	TL.{0,1}S.{0,1}FF	..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	t[ilmv][st][den][fy][fy]	4	2.843	0.569	0.505	2.274	5.00	5.82	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 1/4
comparimotif	elm2015	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	DEG_CRL4_CDT2_1_b	TL.{0,1}S.{0,1}FF	..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	t[ilmv][st][den][fy][fy]	4	2.843	0.569	0.505	2.274	5.00	5.05	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 2/4
comparimotif	elm2015	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	DEG_CRL4_CDT2_1_c	TL.{0,1}S.{0,1}FF	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	t[ilmv][st][den][fy][fy]	4	2.843	0.569	0.505	2.274	5.00	6.59	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	DEG_CRL4_CDT2_1_d	TL.{0,1}S.{0,1}FF	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	t[ilmv][st][den][fy][fy]	4	2.843	0.569	0.505	2.274	5.00	5.82	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	DOC_CYCLIN_1	TL.{0,1}S.{0,1}FF	[RK].L.{0,1}[FYLIVMP]	Variant Overlap	Degenerate Overlap	tLs[filmpvy]	2	1.350	0.637	0.338	1.275	5.00	2.12	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	Substrate recognition site that interacts with cyclin and thereby increases phosphorylation by cyclin/cdk complexes. Predicted proteins should have a CDK phosphorylation site. Also used by cyclin/cdk inhibitors. [24 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	DOC_PP1_RVXF_1	TL.{0,1}S.{0,1}FF	..[RK].{0,1}[VIL][^P][FW].	Variant Subsequence	Degenerate Parent	t[ilv][^p][fw]f	3	1.419	0.649	0.284	1.946	5.00	2.19	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	Protein phosphatase 1 catalytic subunit (PP1c) interacting motif binds targeting proteins that dock to the substrate for dephosphorylation. The motif defined is [RK]{0,1}[VI][^P][FW]. [19 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	LIG_14-3-3_2	TL.{0,1}S.{0,1}FF	R..[^P]([ST])[IVLM].	Variant Overlap	Degenerate Overlap	[st][ilmv]s	2	1.306	0.562	0.435	1.124	5.00	2.32	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	Longer mode 2 interacting phospho-motif for 14-3-3 proteins with key conservation RxxxS#p. [7 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	LIG_14-3-3_3	TL.{0,1}S.{0,1}FF	[RHK][STALV].([ST]).[PESRDIFTQ]	Variant Subsequence	Degenerate Parent	[alstv]l[st]f[defipqrst]	3	1.498	0.703	0.300	2.109	5.00	2.13	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	Consensus derived from reported natural interactors which do not match the Mode 1 and Mode 2 ligands. [22 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	LIG_BRCT_BRCA1_1	TL.{0,1}S.{0,1}FF	.(S)..F	Variant Parent	Degenerate Subsequence	lS.fF	2	2.000	1.000	0.500	2.000	5.00	2.00	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	Phosphopeptide motif which directly interacts with the BRCT (carboxy-terminal) domain of the Breast Cancer Gene BRCA1 with low affinity [5 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	LIG_BRCT_BRCA1_2	TL.{0,1}S.{0,1}FF	.(S)..F.K	Variant Overlap	Degenerate Overlap	lS.fF	2	2.000	0.667	0.500	1.333	5.00	3.00	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	Phosphopeptide motif which directly interacts with the BRCT (carboxy-terminal) domain of the Breast Cancer Gene BRCA1 with high affinity. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	LIG_LIR_Apic_2	TL.{0,1}S.{0,1}FF	[EDST].{0,2}[WFY]..P	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.539	0.390	1.079	5.00	2.17	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	Apicomplexa-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	LIG_LIR_Gen_1	TL.{0,1}S.{0,1}FF	[EDST].{0,2}[WFY]..[ILV]	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.649	0.390	1.298	5.00	1.80	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	Canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [21 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	LIG_LIR_Nem_3	TL.{0,1}S.{0,1}FF	[EDST].{0,2}[WFY]..[ILVFY]	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.717	0.390	1.433	5.00	1.63	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	Nematode-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	LIG_PCNA_PIPBox_1_a	TL.{0,1}S.{0,1}FF	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	5	2.145	0.678	0.428	3.392	5.00	3.16	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	LIG_PCNA_PIPBox_1_b	TL.{0,1}S.{0,1}FF	^.{0,3}.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	5	2.145	0.678	0.428	3.392	5.00	3.16	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 2/2
comparimotif	elm2015	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	LIG_PDZ_Class_1	TL.{0,1}S.{0,1}FF	...[ST].[ACVILF]$	Variant Subsequence	Degenerate Parent	tl[st]f[acfilv]	2	1.171	0.539	0.234	1.079	5.00	2.17	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	The C-terminal class 1 PDZ-binding motif is classically represented by a pattern like (ST)X(VIL)* [48 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	LIG_WD40_WDR5_VDV_2	TL.{0,1}S.{0,1}FF	[EDSTY].{0,4}[VIPLA][TSDEKR][ILVA]	Complex Parent	Complex Subsequence	[desty][ailpv][dekrst][ailv]	3	1.327	0.712	0.375	2.136	5.00	1.86	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	Fungi-specific variant of the WDR5-binding motif that binds to a cleft between blades 5 and 6 of the WD40 repeat domain of WDR5, opposite of the Win motif-binding site, to mediate assembly of histone modification complexes. [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	MOD_NEK2_1	TL.{0,1}S.{0,1}FF	[FLM][^P][^P]([ST])[^DEP][^DE]	Variant Subsequence	Degenerate Parent	[^p][^p][st][^ped][^ed]	5	0.892	0.585	0.178	2.924	5.00	1.53	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	NEK2 phosphorylation motif with preferred Phe, Leu or Met in the -3 position to compensate for less favorable residues in the +1 and +2 position. [3 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	MOD_NEK2_2	TL.{0,1}S.{0,1}FF	[WYPCAG][^P][^P]([ST])[IFCVML][KRHYF]	Variant Subsequence	Degenerate Parent	[^p][^p][st][cfilmv][fhkry]	5	1.668	0.806	0.334	4.029	5.00	2.07	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	NEK2 phosphorylation motif with specific set of residues in the +1 and +2 position to compensate for less favorable residues in the -3 position. [0 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	MOD_PLK	TL.{0,1}S.{0,1}FF	.[DE].([ST])[ILFWMVA]..	Variant Overlap	Degenerate Overlap	[st][afilmvw]sf	2	1.119	0.593	0.280	1.186	5.00	1.89	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	Site phosphorylated by the Polo-like kinase. [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	TRG_Golgi_diPhe_1	TL.{0,1}S.{0,1}FF	Q.{6,6}FF.{6,7}$	Variant Subsequence	Degenerate Parent	tlsFF	2	2.000	0.500	0.400	1.000	5.00	4.00	slimfinder#15120800001#14#TL.{0#1}S.{0#1}FF	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#15#Q..L.SFF	CLV_PCSK_SKI1_1	Q..L.SFF	[RK].[AILMFV][LTKF].	Complex Overlap	Complex Overlap	[kr]s[afilmv][fklt]	2	0.939	0.550	0.249	1.100	5.00	1.71	slimfinder#15120800001#15#Q..L.SFF	Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#15#Q..L.SFF	DOC_USP7_1	Q..L.SFF	[PA][^P][^FYWIL]S[^P]	Complex Parent	Complex Subsequence	[ap][^p][acdeghkmnpqrstv]S[^p]	3	1.034	0.545	0.268	1.634	5.00	1.90	slimfinder#15120800001#15#Q..L.SFF	The USP7 NTD domain binding motif variant based on the MDM2 and P53 interactions. [10 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#15#Q..L.SFF	LIG_14-3-3_3	Q..L.SFF	[RHK][STALV].([ST]).[PESRDIFTQ]	Complex Parent	Complex Subsequence	[hkr][alstv].[st]f[defipqrst]	3	1.498	0.703	0.323	2.109	5.00	2.13	slimfinder#15120800001#15#Q..L.SFF	Consensus derived from reported natural interactors which do not match the Mode 1 and Mode 2 ligands. [22 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#15#Q..L.SFF	LIG_LIR_Apic_2	Q..L.SFF	[EDST].{0,2}[WFY]..P	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.539	0.390	1.079	5.00	2.17	slimfinder#15120800001#15#Q..L.SFF	Apicomplexa-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#15#Q..L.SFF	LIG_LIR_Gen_1	Q..L.SFF	[EDST].{0,2}[WFY]..[ILV]	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.649	0.390	1.298	5.00	1.80	slimfinder#15120800001#15#Q..L.SFF	Canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [21 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#15#Q..L.SFF	LIG_LIR_Nem_3	Q..L.SFF	[EDST].{0,2}[WFY]..[ILVFY]	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.717	0.390	1.433	5.00	1.63	slimfinder#15120800001#15#Q..L.SFF	Nematode-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#15#Q..L.SFF	LIG_PCNA_PIPBox_1_a	Q..L.SFF	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	Q.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	5	3.070	0.971	0.603	4.855	5.00	3.16	slimfinder#15120800001#15#Q..L.SFF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#15#Q..L.SFF	LIG_PCNA_PIPBox_1_b	Q..L.SFF	^.{0,3}.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	q.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	4	2.070	0.655	0.407	2.619	5.00	3.16	slimfinder#15120800001#15#Q..L.SFF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 2/2
comparimotif	elm2015	slimfinder#15120800001#15#Q..L.SFF	LIG_PDZ_Class_1	Q..L.SFF	...[ST].[ACVILF]$	Variant Overlap	Degenerate Overlap	.l.[st]f[acfilv]	2	1.171	0.539	0.293	1.079	5.00	2.17	slimfinder#15120800001#15#Q..L.SFF	The C-terminal class 1 PDZ-binding motif is classically represented by a pattern like (ST)X(VIL)* [48 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#15#Q..L.SFF	MOD_NEK2_1	Q..L.SFF	[FLM][^P][^P]([ST])[^DEP][^DE]	Complex Parent	Complex Subsequence	[flm][^p][^p][st][^ped][^ed]	4	0.875	0.574	0.188	2.295	5.00	1.53	slimfinder#15120800001#15#Q..L.SFF	NEK2 phosphorylation motif with preferred Phe, Leu or Met in the -3 position to compensate for less favorable residues in the +1 and +2 position. [3 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#15#Q..L.SFF	MOD_NEK2_2	Q..L.SFF	[WYPCAG][^P][^P]([ST])[IFCVML][KRHYF]	Complex Parent	Complex Subsequence	[acgpwy][^p][^p][st][cfilmv][fhkry]	4	1.650	0.798	0.373	3.190	5.00	2.07	slimfinder#15120800001#15#Q..L.SFF	NEK2 phosphorylation motif with specific set of residues in the +1 and +2 position to compensate for less favorable residues in the -3 position. [0 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#15#Q..L.SFF	TRG_Golgi_diPhe_1	Q..L.SFF	Q.{6,6}FF.{6,7}$	Variant Subsequence	Degenerate Parent	Q..l.sfF	2	2.000	0.500	0.400	1.000	5.00	4.00	slimfinder#15120800001#15#Q..L.SFF	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#16#Q..I..FF.{1#2}K	CLV_PCSK_SKI1_1	Q..I..FF.{1,2}K	[RK].[AILMFV][LTKF].	Complex Parent	Complex Subsequence	[kr].[afilmv][fklt].	2	0.939	0.550	0.339	1.100	5.00	1.71	slimfinder#15120800001#16#Q..I..FF.{1#2}K	Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#16#Q..I..FF.{1#2}K	DEG_CRL4_CDT2_1_a	Q..I..FF.{1,2}K	..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Overlap	Complex Overlap	..[ilmv][st][den][fy][fy]..[kr]	4	2.843	0.569	0.526	2.274	5.00	5.82	slimfinder#15120800001#16#Q..I..FF.{1#2}K	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 1/4
comparimotif	elm2015	slimfinder#15120800001#16#Q..I..FF.{1#2}K	DEG_CRL4_CDT2_1_b	Q..I..FF.{1,2}K	..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Overlap	Complex Overlap	..[ilmv][st][den][fy][fy]..[kr]	4	2.843	0.569	0.526	2.274	5.00	5.05	slimfinder#15120800001#16#Q..I..FF.{1#2}K	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 2/4
comparimotif	elm2015	slimfinder#15120800001#16#Q..I..FF.{1#2}K	DEG_CRL4_CDT2_1_c	Q..I..FF.{1,2}K	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq]..[ilmv][st][den][fy][fy]..[kr]	5	3.612	0.722	0.564	3.612	5.00	6.59	slimfinder#15120800001#16#Q..I..FF.{1#2}K	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#16#Q..I..FF.{1#2}K	DEG_CRL4_CDT2_1_d	Q..I..FF.{1,2}K	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq]..[ilmv][st][den][fy][fy]..[kr]	5	3.612	0.722	0.564	3.612	5.00	5.82	slimfinder#15120800001#16#Q..I..FF.{1#2}K	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#16#Q..I..FF.{1#2}K	DEG_CRL4_CDT2_2_b	Q..I..FF.{1,2}K	..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][^DE]	Complex Overlap	Complex Overlap	..[ilmv]t[den][fhmy][fmy]..[kr]	4	2.476	0.504	0.440	2.016	5.00	4.91	slimfinder#15120800001#16#Q..I..FF.{1#2}K	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 2/4
comparimotif	elm2015	slimfinder#15120800001#16#Q..I..FF.{1#2}K	DEG_CRL4_CDT2_2_c	Q..I..FF.{1,2}K	[NQ]..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq]..[ilmv]t[den][fhmy][fmy]..[kr]	5	3.245	0.649	0.489	3.245	5.00	6.45	slimfinder#15120800001#16#Q..I..FF.{1#2}K	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#16#Q..I..FF.{1#2}K	DEG_CRL4_CDT2_2_d	Q..I..FF.{1,2}K	[NQ]..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq]..[ilmv]t[den][fhmy][fmy]..[kr]	5	3.245	0.649	0.489	3.245	5.00	5.68	slimfinder#15120800001#16#Q..I..FF.{1#2}K	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#16#Q..I..FF.{1#2}K	LIG_BRCT_BRCA1_2	Q..I..FF.{1,2}K	.(S)..F.K	Complex Parent	Complex Subsequence	is.fF.K	2	2.000	0.667	0.400	1.333	5.00	3.00	slimfinder#15120800001#16#Q..I..FF.{1#2}K	Phosphopeptide motif which directly interacts with the BRCT (carboxy-terminal) domain of the Breast Cancer Gene BRCA1 with high affinity. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#16#Q..I..FF.{1#2}K	LIG_IQ	Q..I..FF.{1,2}K	...[SACLIVTM]..[ILVMFCT]Q.{3,3}[RK].{4,5}[RKQ]..	Complex Subsequence	Complex Parent	Q..i[kr].ff.[kqr]	2	1.633	0.534	0.283	1.068	5.00	3.06	slimfinder#15120800001#16#Q..I..FF.{1#2}K	Calmodulin binding helical peptide motif [40 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#16#Q..I..FF.{1#2}K	LIG_OCRL_FandH_1	Q..I..FF.{1,2}K	.F[^P][^P][KRIL]H[^P][^P][YLMFH][^P]...	Complex Overlap	Complex Overlap	.F[^p][^p][iklr]	3	1.554	0.504	0.515	1.511	5.00	3.09	slimfinder#15120800001#16#Q..I..FF.{1#2}K	The F and H motif describes a 10-13-mer peptide sequence determined by a highly conserved phenylalanine and histidine residue surrounded by hydrophobic amino acids. A complex of ASH and RhoGAP-like domain binds this motif within a hydrophobic pocket. [3 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#16#Q..I..FF.{1#2}K	LIG_PCNA_PIPBox_1_a	Q..I..FF.{1,2}K	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Match	Complex Match	Q.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy].k	4	2.900	0.917	0.551	3.668	5.00	3.16	slimfinder#15120800001#16#Q..I..FF.{1#2}K	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#16#Q..I..FF.{1#2}K	LIG_PCNA_PIPBox_1_b	Q..I..FF.{1,2}K	^.{0,3}.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	q.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy].k	3	1.900	0.601	0.361	1.803	5.00	3.16	slimfinder#15120800001#16#Q..I..FF.{1#2}K	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 2/2
comparimotif	elm2015	slimfinder#15120800001#16#Q..I..FF.{1#2}K	TRG_Golgi_diPhe_1	Q..I..FF.{1,2}K	Q.{6,6}FF.{6,7}$	Complex Subsequence	Complex Parent	Q..i..fFfk	2	2.000	0.500	0.333	1.000	5.00	4.00	slimfinder#15120800001#16#Q..I..FF.{1#2}K	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#17#TL..FF	CLV_PCSK_SKI1_1	TL..FF	[RK].[AILMFV][LTKF].	Complex Overlap	Complex Overlap	[kr].[afilmv][fklt]	2	0.939	0.550	0.339	1.100	4.00	1.71	slimfinder#15120800001#17#TL..FF	Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#17#TL..FF	DEG_CRL4_CDT2_1_a	TL..FF	..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	t[ilmv][st][den][fy][fy]	3	2.074	0.519	0.384	1.556	4.00	5.82	slimfinder#15120800001#17#TL..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 1/4
comparimotif	elm2015	slimfinder#15120800001#17#TL..FF	DEG_CRL4_CDT2_1_b	TL..FF	..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	t[ilmv][st][den][fy][fy]	3	2.074	0.519	0.384	1.556	4.00	5.05	slimfinder#15120800001#17#TL..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 2/4
comparimotif	elm2015	slimfinder#15120800001#17#TL..FF	DEG_CRL4_CDT2_1_c	TL..FF	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	t[ilmv][st][den][fy][fy]	3	2.074	0.519	0.384	1.556	4.00	6.59	slimfinder#15120800001#17#TL..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#17#TL..FF	DEG_CRL4_CDT2_1_d	TL..FF	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	t[ilmv][st][den][fy][fy]	3	2.074	0.519	0.384	1.556	4.00	5.82	slimfinder#15120800001#17#TL..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#17#TL..FF	LIG_14-3-3_2	TL..FF	R..[^P]([ST])[IVLM].	Variant Overlap	Degenerate Overlap	[st][ilmv].	2	1.306	0.562	0.653	1.124	4.00	2.32	slimfinder#15120800001#17#TL..FF	Longer mode 2 interacting phospho-motif for 14-3-3 proteins with key conservation RxxxS#p. [7 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#17#TL..FF	LIG_LIR_Nem_3	TL..FF	[EDST].{0,2}[WFY]..[ILVFY]	Complex Match	Complex Match	[dest]l[fwy].f[filvy]	2	1.000	0.612	0.216	1.225	4.00	1.63	slimfinder#15120800001#17#TL..FF	Nematode-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#17#TL..FF	LIG_PCNA_PIPBox_1_a	TL..FF	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	4	1.974	0.624	0.471	2.498	4.00	3.16	slimfinder#15120800001#17#TL..FF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#17#TL..FF	LIG_PCNA_PIPBox_1_b	TL..FF	^.{0,3}.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	4	1.974	0.624	0.471	2.498	4.00	3.16	slimfinder#15120800001#17#TL..FF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 2/2
comparimotif	elm2015	slimfinder#15120800001#17#TL..FF	LIG_WD40_WDR5_VDV_2	TL..FF	[EDSTY].{0,4}[VIPLA][TSDEKR][ILVA]	Variant Overlap	Degenerate Overlap	[dekrst][ailv]	2	0.939	0.504	0.470	1.007	4.00	1.86	slimfinder#15120800001#17#TL..FF	Fungi-specific variant of the WDR5-binding motif that binds to a cleft between blades 5 and 6 of the WD40 repeat domain of WDR5, opposite of the Win motif-binding site, to mediate assembly of histone modification complexes. [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#17#TL..FF	MOD_NEK2_1	TL..FF	[FLM][^P][^P]([ST])[^DEP][^DE]	Complex Overlap	Complex Overlap	[st][^ped][^ed]	2	0.823	0.539	0.404	1.079	4.00	1.53	slimfinder#15120800001#17#TL..FF	NEK2 phosphorylation motif with preferred Phe, Leu or Met in the -3 position to compensate for less favorable residues in the +1 and +2 position. [3 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#17#TL..FF	MOD_NEK2_2	TL..FF	[WYPCAG][^P][^P]([ST])[IFCVML][KRHYF]	Complex Overlap	Complex Overlap	[st][cfilmv][fhkry]	2	1.171	0.566	0.475	1.131	4.00	2.07	slimfinder#15120800001#17#TL..FF	NEK2 phosphorylation motif with specific set of residues in the +1 and +2 position to compensate for less favorable residues in the -3 position. [0 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#17#TL..FF	MOD_PLK	TL..FF	.[DE].([ST])[ILFWMVA]..	Variant Overlap	Degenerate Overlap	[st][afilmvw]..	2	1.119	0.593	0.560	1.186	4.00	1.89	slimfinder#15120800001#17#TL..FF	Site phosphorylated by the Polo-like kinase. [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#17#TL..FF	TRG_Golgi_diPhe_1	TL..FF	Q.{6,6}FF.{6,7}$	Variant Subsequence	Degenerate Parent	tl..FF	2	2.000	0.500	0.500	1.000	4.00	4.00	slimfinder#15120800001#17#TL..FF	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#17#TL..FF	TRG_PEX_3	TL..FF	L..LL...L..F	Variant Overlap	Degenerate Overlap	tL..F	2	2.000	0.500	0.667	1.000	4.00	5.00	slimfinder#15120800001#17#TL..FF	LxxLLxxxLxxF motif is located in N-terminus of Pex19 receptors that are responsible for docking to Pex3 docking factor at cis side of peroxisomal membrane. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#18#Q..[IL].S.F	DOC_USP7_1	Q..[IL].S.F	[PA][^P][^FYWIL]S[^P]	Complex Parent	Complex Subsequence	[ap][^p][acdeghkmnpqrstv]S[^p]	2	1.017	0.536	0.384	1.071	3.77	1.90	slimfinder#15120800001#18#Q..[IL].S.F	The USP7 NTD domain binding motif variant based on the MDM2 and P53 interactions. [10 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#18#Q..[IL].S.F	LIG_14-3-3_3	Q..[IL].S.F	[RHK][STALV].([ST]).[PESRDIFTQ]	Ugly Parent	Ugly Subsequence	[hkr][ailstv].[st].[defipqrst]	3	1.437	0.674	0.422	2.023	3.77	2.13	slimfinder#15120800001#18#Q..[IL].S.F	Consensus derived from reported natural interactors which do not match the Mode 1 and Mode 2 ligands. [22 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#18#Q..[IL].S.F	LIG_LIR_Apic_2	Q..[IL].S.F	[EDST].{0,2}[WFY]..P	Variant Overlap	Degenerate Overlap	[dest].[fwy]	2	1.171	0.539	0.585	1.079	3.77	2.17	slimfinder#15120800001#18#Q..[IL].S.F	Apicomplexa-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#18#Q..[IL].S.F	LIG_LIR_Gen_1	Q..[IL].S.F	[EDST].{0,2}[WFY]..[ILV]	Variant Overlap	Degenerate Overlap	[dest].[fwy]	2	1.171	0.649	0.585	1.298	3.77	1.80	slimfinder#15120800001#18#Q..[IL].S.F	Canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [21 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#18#Q..[IL].S.F	LIG_LIR_Nem_3	Q..[IL].S.F	[EDST].{0,2}[WFY]..[ILVFY]	Variant Overlap	Degenerate Overlap	[dest].[fwy]	2	1.171	0.717	0.585	1.433	3.77	1.63	slimfinder#15120800001#18#Q..[IL].S.F	Nematode-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#18#Q..[IL].S.F	LIG_PCNA_PIPBox_1_a	Q..[IL].S.F	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	Q.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	4	2.437	0.771	0.542	3.083	3.77	3.16	slimfinder#15120800001#18#Q..[IL].S.F	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#18#Q..[IL].S.F	LIG_PDZ_Class_1	Q..[IL].S.F	...[ST].[ACVILF]$	Variant Overlap	Degenerate Overlap	.[il].[st].[acfilv]	2	1.171	0.539	0.423	1.079	3.77	2.17	slimfinder#15120800001#18#Q..[IL].S.F	The C-terminal class 1 PDZ-binding motif is classically represented by a pattern like (ST)X(VIL)* [48 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#18#Q..[IL].S.F	MOD_NEK2_1	Q..[IL].S.F	[FLM][^P][^P]([ST])[^DEP][^DE]	Complex Parent	Complex Subsequence	[flm][^p][^p][st][^ped][^ed]	3	0.821	0.538	0.236	1.614	3.77	1.53	slimfinder#15120800001#18#Q..[IL].S.F	NEK2 phosphorylation motif with preferred Phe, Leu or Met in the -3 position to compensate for less favorable residues in the +1 and +2 position. [3 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#18#Q..[IL].S.F	MOD_NEK2_2	Q..[IL].S.F	[WYPCAG][^P][^P]([ST])[IFCVML][KRHYF]	Complex Parent	Complex Subsequence	[acgpwy][^p][^p][st][cfilmv][fhkry]	3	1.249	0.603	0.348	1.810	3.77	2.07	slimfinder#15120800001#18#Q..[IL].S.F	NEK2 phosphorylation motif with specific set of residues in the +1 and +2 position to compensate for less favorable residues in the -3 position. [0 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#18#Q..[IL].S.F	TRG_Golgi_diPhe_1	Q..[IL].S.F	Q.{6,6}FF.{6,7}$	Variant Subsequence	Degenerate Parent	Q..[il].s.F	2	2.000	0.531	0.531	1.061	3.77	4.00	slimfinder#15120800001#18#Q..[IL].S.F	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#19#Q..[IL].SF	DOC_USP7_1	Q..[IL].SF	[PA][^P][^FYWIL]S[^P]	Complex Parent	Complex Subsequence	[ap][^p][acdeghkmnpqrstv]S[^p]	3	1.034	0.545	0.285	1.634	3.77	1.90	slimfinder#15120800001#19#Q..[IL].SF	The USP7 NTD domain binding motif variant based on the MDM2 and P53 interactions. [10 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#19#Q..[IL].SF	LIG_14-3-3_3	Q..[IL].SF	[RHK][STALV].([ST]).[PESRDIFTQ]	Ugly Overlap	Ugly Overlap	[hkr][ailstv].[st]f	2	1.171	0.549	0.344	1.098	3.77	2.13	slimfinder#15120800001#19#Q..[IL].SF	Consensus derived from reported natural interactors which do not match the Mode 1 and Mode 2 ligands. [22 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#19#Q..[IL].SF	LIG_LIR_Apic_2	Q..[IL].SF	[EDST].{0,2}[WFY]..P	Variant Overlap	Degenerate Overlap	[dest][fwy]	2	1.171	0.539	0.585	1.079	3.77	2.17	slimfinder#15120800001#19#Q..[IL].SF	Apicomplexa-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#19#Q..[IL].SF	LIG_LIR_Gen_1	Q..[IL].SF	[EDST].{0,2}[WFY]..[ILV]	Variant Overlap	Degenerate Overlap	[dest][fwy]	2	1.171	0.649	0.585	1.298	3.77	1.80	slimfinder#15120800001#19#Q..[IL].SF	Canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [21 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#19#Q..[IL].SF	LIG_LIR_Nem_3	Q..[IL].SF	[EDST].{0,2}[WFY]..[ILVFY]	Variant Overlap	Degenerate Overlap	[dest][fwy]	2	1.171	0.717	0.585	1.433	3.77	1.63	slimfinder#15120800001#19#Q..[IL].SF	Nematode-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#19#Q..[IL].SF	LIG_PCNA_PIPBox_1_a	Q..[IL].SF	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	Q.[^fhwy][ilm][^p][acdegkmnqrst][fhm]	4	2.437	0.771	0.631	3.083	3.77	3.16	slimfinder#15120800001#19#Q..[IL].SF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#19#Q..[IL].SF	MOD_NEK2_1	Q..[IL].SF	[FLM][^P][^P]([ST])[^DEP][^DE]	Complex Overlap	Complex Overlap	[flm][^p][^p][st][^ped]	3	0.840	0.551	0.246	1.652	3.77	1.53	slimfinder#15120800001#19#Q..[IL].SF	NEK2 phosphorylation motif with preferred Phe, Leu or Met in the -3 position to compensate for less favorable residues in the +1 and +2 position. [3 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#19#Q..[IL].SF	MOD_NEK2_2	Q..[IL].SF	[WYPCAG][^P][^P]([ST])[IFCVML][KRHYF]	Complex Overlap	Complex Overlap	[acgpwy][^p][^p][st][cfilmv]	3	1.188	0.574	0.373	1.722	3.77	2.07	slimfinder#15120800001#19#Q..[IL].SF	NEK2 phosphorylation motif with specific set of residues in the +1 and +2 position to compensate for less favorable residues in the -3 position. [0 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#2#Q.[ST]..SFF	CLV_PCSK_SKI1_1	Q.[ST]..SFF	[RK].[AILMFV][LTKF].	Complex Overlap	Complex Overlap	[kr]s[afilmv][fklt]	2	0.939	0.550	0.249	1.100	4.77	1.71	slimfinder#15120800001#2#Q.[ST]..SFF	Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#2#Q.[ST]..SFF	LIG_LIR_Apic_2	Q.[ST]..SFF	[EDST].{0,2}[WFY]..P	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.539	0.390	1.079	4.77	2.17	slimfinder#15120800001#2#Q.[ST]..SFF	Apicomplexa-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#2#Q.[ST]..SFF	LIG_LIR_Gen_1	Q.[ST]..SFF	[EDST].{0,2}[WFY]..[ILV]	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.649	0.390	1.298	4.77	1.80	slimfinder#15120800001#2#Q.[ST]..SFF	Canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [21 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#2#Q.[ST]..SFF	LIG_LIR_Nem_3	Q.[ST]..SFF	[EDST].{0,2}[WFY]..[ILVFY]	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.717	0.390	1.433	4.77	1.63	slimfinder#15120800001#2#Q.[ST]..SFF	Nematode-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#2#Q.[ST]..SFF	LIG_PCNA_PIPBox_1_a	Q.[ST]..SFF	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	Q.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	5	2.512	0.794	0.463	3.972	4.77	3.16	slimfinder#15120800001#2#Q.[ST]..SFF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#2#Q.[ST]..SFF	LIG_PDZ_Class_1	Q.[ST]..SFF	...[ST].[ACVILF]$	Variant Overlap	Degenerate Overlap	[st]..[st]f[acfilv]	2	1.171	0.539	0.311	1.079	4.77	2.17	slimfinder#15120800001#2#Q.[ST]..SFF	The C-terminal class 1 PDZ-binding motif is classically represented by a pattern like (ST)X(VIL)* [48 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#2#Q.[ST]..SFF	MOD_CK1_1	Q.[ST]..SFF	S..([ST])...	Complex Overlap	Complex Overlap	[st]..[st]ff	2	1.537	0.869	0.384	1.738	4.77	1.77	slimfinder#15120800001#2#Q.[ST]..SFF	CK1 phosphorylation site [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#2#Q.[ST]..SFF	MOD_NEK2_1	Q.[ST]..SFF	[FLM][^P][^P]([ST])[^DEP][^DE]	Complex Overlap	Complex Overlap	[^p][^p][ST][^ped][^ed]	2	0.786	0.515	0.419	1.030	4.77	1.53	slimfinder#15120800001#2#Q.[ST]..SFF	NEK2 phosphorylation motif with preferred Phe, Leu or Met in the -3 position to compensate for less favorable residues in the +1 and +2 position. [3 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#2#Q.[ST]..SFF	MOD_PLK	Q.[ST]..SFF	.[DE].([ST])[ILFWMVA]..	Complex Overlap	Complex Overlap	[st][de].[st][afilmvw]f	2	1.119	0.593	0.247	1.186	4.77	1.89	slimfinder#15120800001#2#Q.[ST]..SFF	Site phosphorylated by the Polo-like kinase. [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#2#Q.[ST]..SFF	TRG_Golgi_diPhe_1	Q.[ST]..SFF	Q.{6,6}FF.{6,7}$	Variant Subsequence	Degenerate Parent	Q.[st]..sfF	2	2.000	0.500	0.419	1.000	4.77	4.00	slimfinder#15120800001#2#Q.[ST]..SFF	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#20#K..Q..[IL]..FF	CLV_PCSK_SKI1_1	K..Q..[IL]..FF	[RK].[AILMFV][LTKF].	Complex Overlap	Complex Overlap	[kr].[afilmv][fklt]	2	0.939	0.550	0.339	1.100	4.77	1.71	slimfinder#15120800001#20#K..Q..[IL]..FF	Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#20#K..Q..[IL]..FF	DEG_CRL4_CDT2_1_c	K..Q..[IL]..FF	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Overlap	Complex Overlap	[nq]..[ilmv][st][den][fy][fy]	4	2.843	0.596	0.550	2.385	4.77	6.59	slimfinder#15120800001#20#K..Q..[IL]..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#20#K..Q..[IL]..FF	DEG_CRL4_CDT2_1_d	K..Q..[IL]..FF	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Overlap	Complex Overlap	[nq]..[ilmv][st][den][fy][fy]	4	2.843	0.596	0.550	2.385	4.77	5.82	slimfinder#15120800001#20#K..Q..[IL]..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#20#K..Q..[IL]..FF	DEG_CRL4_CDT2_2_c	K..Q..[IL]..FF	[NQ]..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][KR][^DE]	Complex Overlap	Complex Overlap	[nq]..[ilmv]t[den][fhmy][fmy]	4	2.476	0.519	0.458	2.077	4.77	6.45	slimfinder#15120800001#20#K..Q..[IL]..FF	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#20#K..Q..[IL]..FF	DEG_CRL4_CDT2_2_d	K..Q..[IL]..FF	[NQ]..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][^DE]	Complex Overlap	Complex Overlap	[nq]..[ilmv]t[den][fhmy][fmy]	4	2.476	0.519	0.458	2.077	4.77	5.68	slimfinder#15120800001#20#K..Q..[IL]..FF	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#20#K..Q..[IL]..FF	DOC_MAPK_1_a	K..Q..[IL]..FF	[KR].{0,2}[KR].{2,4}[ILVM].[ILVF]	Complex Parent	Complex Subsequence	[kr][kr].q[ilmv].[filv]	2	1.306	0.500	0.320	1.000	4.77	2.61	slimfinder#15120800001#20#K..Q..[IL]..FF	MAPK interacting molecules (e.g. MAPKKs, substrates, phosphatases) carry docking motif that help to regulate specific interaction in the MAPK cascade. The classic motif approximates (R/K)xxxx#x# where # is a hydrophobic residue. [16 ELM instances] variant 1/3
comparimotif	elm2015	slimfinder#15120800001#20#K..Q..[IL]..FF	LIG_PCNA_PIPBox_1_a	K..Q..[IL]..FF	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Overlap	Complex Overlap	Q.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	4	2.900	0.917	0.719	3.668	4.77	3.16	slimfinder#15120800001#20#K..Q..[IL]..FF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#20#K..Q..[IL]..FF	TRG_Golgi_diPhe_1	K..Q..[IL]..FF	Q.{6,6}FF.{6,7}$	Variant Overlap	Degenerate Overlap	Q..[il]..fF	2	2.000	0.500	0.531	1.000	4.77	4.00	slimfinder#15120800001#20#K..Q..[IL]..FF	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#21#[ST]..SFF	CLV_PCSK_SKI1_1	[ST]..SFF	[RK].[AILMFV][LTKF].	Complex Overlap	Complex Overlap	[kr]s[afilmv][fklt]	2	0.939	0.550	0.249	1.100	3.77	1.71	slimfinder#15120800001#21#[ST]..SFF	Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#21#[ST]..SFF	DEG_SCF_COI1_1	[ST]..SFF	..[RK][RK].SL..F[FLM].[RK]R[HRK].[RK].	Complex Subsequence	Complex Parent	[st]l.sF[flm]	3	2.402	0.637	0.480	1.912	3.77	8.34	slimfinder#15120800001#21#[ST]..SFF	This degron motif is present in JAZ transcriptional repressor proteins and binds to the COI1 F-box protein of the SCF E3 ubiquitin ligase in a jasmonate-dependent manner. [9 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#21#[ST]..SFF	LIG_LIR_Apic_2	[ST]..SFF	[EDST].{0,2}[WFY]..P	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.539	0.390	1.079	3.77	2.17	slimfinder#15120800001#21#[ST]..SFF	Apicomplexa-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#21#[ST]..SFF	LIG_LIR_Gen_1	[ST]..SFF	[EDST].{0,2}[WFY]..[ILV]	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.649	0.390	1.298	3.77	1.80	slimfinder#15120800001#21#[ST]..SFF	Canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [21 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#21#[ST]..SFF	LIG_LIR_Nem_3	[ST]..SFF	[EDST].{0,2}[WFY]..[ILVFY]	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.717	0.390	1.433	3.77	1.63	slimfinder#15120800001#21#[ST]..SFF	Nematode-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#21#[ST]..SFF	LIG_PDZ_Class_1	[ST]..SFF	...[ST].[ACVILF]$	Variant Subsequence	Degenerate Parent	[st]..[st]f[acfilv]	2	1.171	0.539	0.311	1.079	3.77	2.17	slimfinder#15120800001#21#[ST]..SFF	The C-terminal class 1 PDZ-binding motif is classically represented by a pattern like (ST)X(VIL)* [48 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#21#[ST]..SFF	MOD_CK1_1	[ST]..SFF	S..([ST])...	Complex Subsequence	Complex Parent	[st]..[st]ff	2	1.537	0.869	0.384	1.738	3.77	1.77	slimfinder#15120800001#21#[ST]..SFF	CK1 phosphorylation site [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#21#[ST]..SFF	MOD_PLK	[ST]..SFF	.[DE].([ST])[ILFWMVA]..	Complex Subsequence	Complex Parent	[st][de].[st][afilmvw]f	2	1.119	0.593	0.247	1.186	3.77	1.89	slimfinder#15120800001#21#[ST]..SFF	Site phosphorylated by the Polo-like kinase. [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#21#[ST]..SFF	TRG_Golgi_diPhe_1	[ST]..SFF	Q.{6,6}FF.{6,7}$	Variant Subsequence	Degenerate Parent	[st]..sFF	2	2.000	0.531	0.531	1.061	3.77	4.00	slimfinder#15120800001#21#[ST]..SFF	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#22#[KR]Q..L..FF	CLV_PCSK_SKI1_1	[KR]Q..L..FF	[RK].[AILMFV][LTKF].	Complex Overlap	Complex Overlap	[kr].[afilmv][fklt]	2	0.939	0.550	0.339	1.100	4.77	1.71	slimfinder#15120800001#22#[KR]Q..L..FF	Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#22#[KR]Q..L..FF	DEG_CRL4_CDT2_1_c	[KR]Q..L..FF	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Overlap	Complex Overlap	[nq]..[ilmv][st][den][fy][fy]	4	2.843	0.596	0.526	2.385	4.77	6.59	slimfinder#15120800001#22#[KR]Q..L..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#22#[KR]Q..L..FF	DEG_CRL4_CDT2_1_d	[KR]Q..L..FF	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Overlap	Complex Overlap	[nq]..[ilmv][st][den][fy][fy]	4	2.843	0.596	0.526	2.385	4.77	5.82	slimfinder#15120800001#22#[KR]Q..L..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#22#[KR]Q..L..FF	DEG_CRL4_CDT2_2_c	[KR]Q..L..FF	[NQ]..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][KR][^DE]	Complex Overlap	Complex Overlap	[nq]..[ilmv]t[den][fhmy][fmy]	4	2.476	0.519	0.440	2.077	4.77	6.45	slimfinder#15120800001#22#[KR]Q..L..FF	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#22#[KR]Q..L..FF	DEG_CRL4_CDT2_2_d	[KR]Q..L..FF	[NQ]..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][^DE]	Complex Overlap	Complex Overlap	[nq]..[ilmv]t[den][fhmy][fmy]	4	2.476	0.519	0.440	2.077	4.77	5.68	slimfinder#15120800001#22#[KR]Q..L..FF	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#22#[KR]Q..L..FF	DOC_CYCLIN_1	[KR]Q..L..FF	[RK].L.{0,1}[FYLIVMP]	Complex Parent	Complex Subsequence	[KR]ql.[filmpvy]	2	1.119	0.528	0.297	1.056	4.77	2.12	slimfinder#15120800001#22#[KR]Q..L..FF	Substrate recognition site that interacts with cyclin and thereby increases phosphorylation by cyclin/cdk complexes. Predicted proteins should have a CDK phosphorylation site. Also used by cyclin/cdk inhibitors. [24 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#22#[KR]Q..L..FF	DOC_MAPK_1_a	[KR]Q..L..FF	[KR].{0,2}[KR].{2,4}[ILVM].[ILVF]	Complex Parent	Complex Subsequence	[KR]q[kr].l[ilmv].[filv]	2	1.306	0.500	0.257	1.000	4.77	2.61	slimfinder#15120800001#22#[KR]Q..L..FF	MAPK interacting molecules (e.g. MAPKKs, substrates, phosphatases) carry docking motif that help to regulate specific interaction in the MAPK cascade. The classic motif approximates (R/K)xxxx#x# where # is a hydrophobic residue. [16 ELM instances] variant 1/3
comparimotif	elm2015	slimfinder#15120800001#22#[KR]Q..L..FF	LIG_PCNA_PIPBox_1_a	[KR]Q..L..FF	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Overlap	Complex Overlap	Q.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	4	2.900	0.917	0.680	3.668	4.77	3.16	slimfinder#15120800001#22#[KR]Q..L..FF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#22#[KR]Q..L..FF	LIG_PCNA_PIPBox_1_b	[KR]Q..L..FF	^.{0,3}.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	[kr]q.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	3	1.900	0.601	0.378	1.803	4.77	3.16	slimfinder#15120800001#22#[KR]Q..L..FF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 2/2
comparimotif	elm2015	slimfinder#15120800001#22#[KR]Q..L..FF	TRG_Golgi_diPhe_1	[KR]Q..L..FF	Q.{6,6}FF.{6,7}$	Variant Overlap	Degenerate Overlap	Q..l..fF	2	2.000	0.500	0.500	1.000	4.77	4.00	slimfinder#15120800001#22#[KR]Q..L..FF	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#22#[KR]Q..L..FF	TRG_LysEnd_APsAcLL_1	[KR]Q..L..FF	[DERQ]...L[LVI]	Ugly Parent	Ugly Subsequence	[dekqr]q..L[ilv]	2	1.463	0.674	0.430	1.348	4.77	2.17	slimfinder#15120800001#22#[KR]Q..L..FF	Sorting and internalisation signal found in the cytoplasmic juxta-membrane region of type I transmembrane proteins. Targets them from the Trans Golgi Network to the lysosomal-endosomal-melanosomal compartments. Interacts with adaptor protein (AP) complexes [16 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#23#Q.TL..F	DEG_CRL4_CDT2_1_c	Q.TL..F	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq].t[ilmv][st][den][fy]	3	2.074	0.519	0.384	1.556	4.00	6.59	slimfinder#15120800001#23#Q.TL..F	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#23#Q.TL..F	DEG_CRL4_CDT2_1_d	Q.TL..F	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq].t[ilmv][st][den][fy]	3	2.074	0.519	0.384	1.556	4.00	5.82	slimfinder#15120800001#23#Q.TL..F	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#23#Q.TL..F	LIG_14-3-3_2	Q.TL..F	R..[^P]([ST])[IVLM].	Complex Overlap	Complex Overlap	q[^p][st][ilmv].	2	1.306	0.562	0.433	1.124	4.00	2.32	slimfinder#15120800001#23#Q.TL..F	Longer mode 2 interacting phospho-motif for 14-3-3 proteins with key conservation RxxxS#p. [7 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#23#Q.TL..F	LIG_Clathr_ClatBox_1	Q.TL..F	L[IVLMF].[IVLMF][DE]	Complex Overlap	Complex Overlap	L[filmv].[filmv]	2	1.463	0.543	0.594	1.086	4.00	2.69	slimfinder#15120800001#23#Q.TL..F	Clathrin box motif found on cargo adaptor proteins, it interacts with the beta propeller structure located at the N-terminus of Clathrin heavy chain. [18 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#23#Q.TL..F	LIG_PCNA_PIPBox_1_a	Q.TL..F	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	Q.[^fhwy][ilm][^p][acdegkmnqrst][fhm]	4	2.341	0.740	0.559	2.962	4.00	3.16	slimfinder#15120800001#23#Q.TL..F	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#23#Q.TL..F	LIG_WD40_WDR5_VDV_2	Q.TL..F	[EDSTY].{0,4}[VIPLA][TSDEKR][ILVA]	Complex Overlap	Complex Overlap	q[ailpv][dekrst][ailv]	2	0.939	0.504	0.271	1.007	4.00	1.86	slimfinder#15120800001#23#Q.TL..F	Fungi-specific variant of the WDR5-binding motif that binds to a cleft between blades 5 and 6 of the WD40 repeat domain of WDR5, opposite of the Win motif-binding site, to mediate assembly of histone modification complexes. [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#23#Q.TL..F	MOD_NEK2_1	Q.TL..F	[FLM][^P][^P]([ST])[^DEP][^DE]	Complex Overlap	Complex Overlap	[^p][^p][st][^ped][^ed]	3	0.840	0.551	0.275	1.652	4.00	1.53	slimfinder#15120800001#23#Q.TL..F	NEK2 phosphorylation motif with preferred Phe, Leu or Met in the -3 position to compensate for less favorable residues in the +1 and +2 position. [3 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#23#Q.TL..F	MOD_NEK2_2	Q.TL..F	[WYPCAG][^P][^P]([ST])[IFCVML][KRHYF]	Complex Overlap	Complex Overlap	[^p][^p][st][cfilmv][fhkry]	3	1.188	0.574	0.341	1.722	4.00	2.07	slimfinder#15120800001#23#Q.TL..F	NEK2 phosphorylation motif with specific set of residues in the +1 and +2 position to compensate for less favorable residues in the -3 position. [0 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#23#Q.TL..F	TRG_PEX_3	Q.TL..F	L..LL...L..F	Variant Subsequence	Degenerate Parent	q.tL..F	2	2.000	0.500	0.500	1.000	4.00	5.00	slimfinder#15120800001#23#Q.TL..F	LxxLLxxxLxxF motif is located in N-terminus of Pex19 receptors that are responsible for docking to Pex3 docking factor at cis side of peroxisomal membrane. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#24#Q.TL.S.F	LIG_14-3-3_2	Q.TL.S.F	R..[^P]([ST])[IVLM].	Complex Overlap	Complex Overlap	q[^p][st][ilmv].	2	1.306	0.562	0.433	1.124	5.00	2.32	slimfinder#15120800001#24#Q.TL.S.F	Longer mode 2 interacting phospho-motif for 14-3-3 proteins with key conservation RxxxS#p. [7 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#24#Q.TL.S.F	LIG_LIR_Apic_2	Q.TL.S.F	[EDST].{0,2}[WFY]..P	Variant Overlap	Degenerate Overlap	[dest].[fwy]	2	1.171	0.539	0.585	1.079	5.00	2.17	slimfinder#15120800001#24#Q.TL.S.F	Apicomplexa-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#24#Q.TL.S.F	LIG_LIR_Gen_1	Q.TL.S.F	[EDST].{0,2}[WFY]..[ILV]	Variant Overlap	Degenerate Overlap	[dest].[fwy]	2	1.171	0.649	0.585	1.298	5.00	1.80	slimfinder#15120800001#24#Q.TL.S.F	Canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [21 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#24#Q.TL.S.F	LIG_LIR_Nem_3	Q.TL.S.F	[EDST].{0,2}[WFY]..[ILVFY]	Variant Overlap	Degenerate Overlap	[dest].[fwy]	2	1.171	0.717	0.585	1.433	5.00	1.63	slimfinder#15120800001#24#Q.TL.S.F	Nematode-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#24#Q.TL.S.F	LIG_PCNA_PIPBox_1_a	Q.TL.S.F	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	Q.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	5	2.512	0.794	0.444	3.972	5.00	3.16	slimfinder#15120800001#24#Q.TL.S.F	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#24#Q.TL.S.F	LIG_PDZ_Class_1	Q.TL.S.F	...[ST].[ACVILF]$	Variant Overlap	Degenerate Overlap	tl.[st].[acfilv]	2	1.171	0.539	0.293	1.079	5.00	2.17	slimfinder#15120800001#24#Q.TL.S.F	The C-terminal class 1 PDZ-binding motif is classically represented by a pattern like (ST)X(VIL)* [48 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#24#Q.TL.S.F	LIG_WD40_WDR5_VDV_2	Q.TL.S.F	[EDSTY].{0,4}[VIPLA][TSDEKR][ILVA]	Complex Overlap	Complex Overlap	q[ailpv][dekrst][ailv]	2	0.939	0.504	0.271	1.007	5.00	1.86	slimfinder#15120800001#24#Q.TL.S.F	Fungi-specific variant of the WDR5-binding motif that binds to a cleft between blades 5 and 6 of the WD40 repeat domain of WDR5, opposite of the Win motif-binding site, to mediate assembly of histone modification complexes. [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#24#Q.TL.S.F	MOD_NEK2_1	Q.TL.S.F	[FLM][^P][^P]([ST])[^DEP][^DE]	Complex Overlap	Complex Overlap	[^p][^p][st][^ped][^ed]	3	0.840	0.551	0.275	1.652	5.00	1.53	slimfinder#15120800001#24#Q.TL.S.F	NEK2 phosphorylation motif with preferred Phe, Leu or Met in the -3 position to compensate for less favorable residues in the +1 and +2 position. [3 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#24#Q.TL.S.F	MOD_NEK2_2	Q.TL.S.F	[WYPCAG][^P][^P]([ST])[IFCVML][KRHYF]	Complex Overlap	Complex Overlap	[^p][^p][st][cfilmv][fhkry]	3	1.188	0.574	0.341	1.722	5.00	2.07	slimfinder#15120800001#24#Q.TL.S.F	NEK2 phosphorylation motif with specific set of residues in the +1 and +2 position to compensate for less favorable residues in the -3 position. [0 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#24#Q.TL.S.F	TRG_Golgi_diPhe_1	Q.TL.S.F	Q.{6,6}FF.{6,7}$	Variant Subsequence	Degenerate Parent	Q.tl.s.F	2	2.000	0.500	0.400	1.000	5.00	4.00	slimfinder#15120800001#24#Q.TL.S.F	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#25#T..SFF	CLV_PCSK_SKI1_1	T..SFF	[RK].[AILMFV][LTKF].	Complex Overlap	Complex Overlap	[kr]s[afilmv][fklt]	2	0.939	0.550	0.249	1.100	4.00	1.71	slimfinder#15120800001#25#T..SFF	Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#25#T..SFF	LIG_LIR_Apic_2	T..SFF	[EDST].{0,2}[WFY]..P	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.539	0.390	1.079	4.00	2.17	slimfinder#15120800001#25#T..SFF	Apicomplexa-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#25#T..SFF	LIG_LIR_Gen_1	T..SFF	[EDST].{0,2}[WFY]..[ILV]	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.649	0.390	1.298	4.00	1.80	slimfinder#15120800001#25#T..SFF	Canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [21 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#25#T..SFF	LIG_LIR_Nem_3	T..SFF	[EDST].{0,2}[WFY]..[ILVFY]	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.717	0.390	1.433	4.00	1.63	slimfinder#15120800001#25#T..SFF	Nematode-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#25#T..SFF	LIG_PDZ_Class_1	T..SFF	...[ST].[ACVILF]$	Variant Subsequence	Degenerate Parent	t..[st]f[acfilv]	2	1.171	0.539	0.293	1.079	4.00	2.17	slimfinder#15120800001#25#T..SFF	The C-terminal class 1 PDZ-binding motif is classically represented by a pattern like (ST)X(VIL)* [48 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#25#T..SFF	MOD_PLK	T..SFF	.[DE].([ST])[ILFWMVA]..	Complex Subsequence	Complex Parent	t[de].[st][afilmvw]f	2	1.119	0.593	0.235	1.186	4.00	1.89	slimfinder#15120800001#25#T..SFF	Site phosphorylated by the Polo-like kinase. [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#25#T..SFF	TRG_Golgi_diPhe_1	T..SFF	Q.{6,6}FF.{6,7}$	Variant Subsequence	Degenerate Parent	t..sFF	2	2.000	0.500	0.500	1.000	4.00	4.00	slimfinder#15120800001#25#T..SFF	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#26#Q.TL.SF	LIG_14-3-3_2	Q.TL.SF	R..[^P]([ST])[IVLM].	Complex Overlap	Complex Overlap	q[^p][st][ilmv].	2	1.306	0.562	0.433	1.124	5.00	2.32	slimfinder#15120800001#26#Q.TL.SF	Longer mode 2 interacting phospho-motif for 14-3-3 proteins with key conservation RxxxS#p. [7 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#26#Q.TL.SF	LIG_Clathr_ClatBox_1	Q.TL.SF	L[IVLMF].[IVLMF][DE]	Complex Overlap	Complex Overlap	L[filmv]s[filmv]	2	1.463	0.543	0.422	1.086	5.00	2.69	slimfinder#15120800001#26#Q.TL.SF	Clathrin box motif found on cargo adaptor proteins, it interacts with the beta propeller structure located at the N-terminus of Clathrin heavy chain. [18 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#26#Q.TL.SF	LIG_LIR_Apic_2	Q.TL.SF	[EDST].{0,2}[WFY]..P	Variant Overlap	Degenerate Overlap	[dest][fwy]	2	1.171	0.539	0.585	1.079	5.00	2.17	slimfinder#15120800001#26#Q.TL.SF	Apicomplexa-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#26#Q.TL.SF	LIG_LIR_Gen_1	Q.TL.SF	[EDST].{0,2}[WFY]..[ILV]	Variant Overlap	Degenerate Overlap	[dest][fwy]	2	1.171	0.649	0.585	1.298	5.00	1.80	slimfinder#15120800001#26#Q.TL.SF	Canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [21 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#26#Q.TL.SF	LIG_LIR_Nem_3	Q.TL.SF	[EDST].{0,2}[WFY]..[ILVFY]	Variant Overlap	Degenerate Overlap	[dest][fwy]	2	1.171	0.717	0.585	1.433	5.00	1.63	slimfinder#15120800001#26#Q.TL.SF	Nematode-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#26#Q.TL.SF	LIG_PCNA_PIPBox_1_a	Q.TL.SF	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	Q.[^fhwy][ilm][^p][acdegkmnqrst][fhm]	5	2.512	0.794	0.501	3.972	5.00	3.16	slimfinder#15120800001#26#Q.TL.SF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#26#Q.TL.SF	LIG_WD40_WDR5_VDV_2	Q.TL.SF	[EDSTY].{0,4}[VIPLA][TSDEKR][ILVA]	Complex Overlap	Complex Overlap	q[ailpv][dekrst][ailv]	2	0.939	0.504	0.271	1.007	5.00	1.86	slimfinder#15120800001#26#Q.TL.SF	Fungi-specific variant of the WDR5-binding motif that binds to a cleft between blades 5 and 6 of the WD40 repeat domain of WDR5, opposite of the Win motif-binding site, to mediate assembly of histone modification complexes. [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#26#Q.TL.SF	MOD_NEK2_1	Q.TL.SF	[FLM][^P][^P]([ST])[^DEP][^DE]	Complex Overlap	Complex Overlap	[^p][^p][st][^ped][^ed]	3	0.840	0.551	0.275	1.652	5.00	1.53	slimfinder#15120800001#26#Q.TL.SF	NEK2 phosphorylation motif with preferred Phe, Leu or Met in the -3 position to compensate for less favorable residues in the +1 and +2 position. [3 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#26#Q.TL.SF	MOD_NEK2_2	Q.TL.SF	[WYPCAG][^P][^P]([ST])[IFCVML][KRHYF]	Complex Overlap	Complex Overlap	[^p][^p][st][cfilmv][fhkry]	3	1.188	0.574	0.341	1.722	5.00	2.07	slimfinder#15120800001#26#Q.TL.SF	NEK2 phosphorylation motif with specific set of residues in the +1 and +2 position to compensate for less favorable residues in the -3 position. [0 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#27#[ST][IL]..FF	CLV_PCSK_SKI1_1	[ST][IL]..FF	[RK].[AILMFV][LTKF].	Complex Overlap	Complex Overlap	[kr].[afilmv][fklt]	2	0.939	0.550	0.339	1.100	3.54	1.71	slimfinder#15120800001#27#[ST][IL]..FF	Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#27#[ST][IL]..FF	DEG_CRL4_CDT2_1_a	[ST][IL]..FF	..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[st][ilmv][st][den][fy][fy]	3	2.074	0.586	0.420	1.759	3.54	5.82	slimfinder#15120800001#27#[ST][IL]..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 1/4
comparimotif	elm2015	slimfinder#15120800001#27#[ST][IL]..FF	DEG_CRL4_CDT2_1_b	[ST][IL]..FF	..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[st][ilmv][st][den][fy][fy]	3	2.074	0.586	0.420	1.759	3.54	5.05	slimfinder#15120800001#27#[ST][IL]..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 2/4
comparimotif	elm2015	slimfinder#15120800001#27#[ST][IL]..FF	DEG_CRL4_CDT2_1_c	[ST][IL]..FF	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[st][ilmv][st][den][fy][fy]	3	2.074	0.586	0.420	1.759	3.54	6.59	slimfinder#15120800001#27#[ST][IL]..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#27#[ST][IL]..FF	DEG_CRL4_CDT2_1_d	[ST][IL]..FF	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[st][ilmv][st][den][fy][fy]	3	2.074	0.586	0.420	1.759	3.54	5.82	slimfinder#15120800001#27#[ST][IL]..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#27#[ST][IL]..FF	DEG_SCF_COI1_1	[ST][IL]..FF	..[RK][RK].SL..F[FLM].[RK]R[HRK].[RK].	Complex Subsequence	Complex Parent	[st][il]..F[flm]	4	3.171	0.896	0.793	3.585	3.54	8.34	slimfinder#15120800001#27#[ST][IL]..FF	This degron motif is present in JAZ transcriptional repressor proteins and binds to the COI1 F-box protein of the SCF E3 ubiquitin ligase in a jasmonate-dependent manner. [9 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#27#[ST][IL]..FF	LIG_14-3-3_2	[ST][IL]..FF	R..[^P]([ST])[IVLM].	Variant Overlap	Degenerate Overlap	[ST][ilmv].	2	1.306	0.562	0.849	1.124	3.54	2.32	slimfinder#15120800001#27#[ST][IL]..FF	Longer mode 2 interacting phospho-motif for 14-3-3 proteins with key conservation RxxxS#p. [7 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#27#[ST][IL]..FF	LIG_LIR_Nem_3	[ST][IL]..FF	[EDST].{0,2}[WFY]..[ILVFY]	Complex Match	Complex Match	[dest][il][fwy].f[filvy]	2	1.000	0.612	0.240	1.225	3.54	1.63	slimfinder#15120800001#27#[ST][IL]..FF	Nematode-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#27#[ST][IL]..FF	LIG_PCNA_PIPBox_1_a	[ST][IL]..FF	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	4	1.974	0.624	0.530	2.498	3.54	3.16	slimfinder#15120800001#27#[ST][IL]..FF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#27#[ST][IL]..FF	LIG_PCNA_PIPBox_1_b	[ST][IL]..FF	^.{0,3}.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	4	1.974	0.624	0.530	2.498	3.54	3.16	slimfinder#15120800001#27#[ST][IL]..FF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 2/2
comparimotif	elm2015	slimfinder#15120800001#27#[ST][IL]..FF	LIG_WD40_WDR5_VDV_2	[ST][IL]..FF	[EDSTY].{0,4}[VIPLA][TSDEKR][ILVA]	Variant Overlap	Degenerate Overlap	[dekrst][ailv]	2	0.939	0.504	0.611	1.007	3.54	1.86	slimfinder#15120800001#27#[ST][IL]..FF	Fungi-specific variant of the WDR5-binding motif that binds to a cleft between blades 5 and 6 of the WD40 repeat domain of WDR5, opposite of the Win motif-binding site, to mediate assembly of histone modification complexes. [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#27#[ST][IL]..FF	MOD_NEK2_1	[ST][IL]..FF	[FLM][^P][^P]([ST])[^DEP][^DE]	Complex Overlap	Complex Overlap	[ST][^ped][^ed]	2	0.823	0.539	0.523	1.079	3.54	1.53	slimfinder#15120800001#27#[ST][IL]..FF	NEK2 phosphorylation motif with preferred Phe, Leu or Met in the -3 position to compensate for less favorable residues in the +1 and +2 position. [3 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#27#[ST][IL]..FF	MOD_NEK2_2	[ST][IL]..FF	[WYPCAG][^P][^P]([ST])[IFCVML][KRHYF]	Complex Overlap	Complex Overlap	[ST][cfilmv][fhkry]	2	1.171	0.566	0.585	1.131	3.54	2.07	slimfinder#15120800001#27#[ST][IL]..FF	NEK2 phosphorylation motif with specific set of residues in the +1 and +2 position to compensate for less favorable residues in the -3 position. [0 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#27#[ST][IL]..FF	MOD_PK_1	[ST][IL]..FF	[RK]..(S)[VI]..	Ugly Overlap	Ugly Overlap	[st][ilv]..	2	1.402	0.553	0.793	1.105	3.54	2.54	slimfinder#15120800001#27#[ST][IL]..FF	Phosphorylase kinase phosphorylation site [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#27#[ST][IL]..FF	MOD_PLK	[ST][IL]..FF	.[DE].([ST])[ILFWMVA]..	Variant Overlap	Degenerate Overlap	[ST][afilmvw]..	2	1.119	0.593	0.728	1.186	3.54	1.89	slimfinder#15120800001#27#[ST][IL]..FF	Site phosphorylated by the Polo-like kinase. [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#27#[ST][IL]..FF	TRG_Golgi_diPhe_1	[ST][IL]..FF	Q.{6,6}FF.{6,7}$	Variant Subsequence	Degenerate Parent	[st][il]..FF	2	2.000	0.565	0.565	1.131	3.54	4.00	slimfinder#15120800001#27#[ST][IL]..FF	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#27#[ST][IL]..FF	TRG_PEX_3	[ST][IL]..FF	L..LL...L..F	Complex Overlap	Complex Overlap	[st][il]..F	2	1.769	0.500	0.639	1.000	3.54	5.00	slimfinder#15120800001#27#[ST][IL]..FF	LxxLLxxxLxxF motif is located in N-terminus of Pex19 receptors that are responsible for docking to Pex3 docking factor at cis side of peroxisomal membrane. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#28#Q..I..FF	CLV_PCSK_SKI1_1	Q..I..FF	[RK].[AILMFV][LTKF].	Complex Overlap	Complex Overlap	[kr].[afilmv][fklt]	2	0.939	0.550	0.339	1.100	4.00	1.71	slimfinder#15120800001#28#Q..I..FF	Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#28#Q..I..FF	DEG_CRL4_CDT2_1_a	Q..I..FF	..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Overlap	Complex Overlap	..[ilmv][st][den][fy][fy]	3	2.074	0.519	0.471	1.556	4.00	5.82	slimfinder#15120800001#28#Q..I..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 1/4
comparimotif	elm2015	slimfinder#15120800001#28#Q..I..FF	DEG_CRL4_CDT2_1_b	Q..I..FF	..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Overlap	Complex Overlap	..[ilmv][st][den][fy][fy]	3	2.074	0.519	0.471	1.556	4.00	5.05	slimfinder#15120800001#28#Q..I..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 2/4
comparimotif	elm2015	slimfinder#15120800001#28#Q..I..FF	DEG_CRL4_CDT2_1_c	Q..I..FF	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq]..[ilmv][st][den][fy][fy]	4	2.843	0.711	0.526	2.843	4.00	6.59	slimfinder#15120800001#28#Q..I..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#28#Q..I..FF	DEG_CRL4_CDT2_1_d	Q..I..FF	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq]..[ilmv][st][den][fy][fy]	4	2.843	0.711	0.526	2.843	4.00	5.82	slimfinder#15120800001#28#Q..I..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#28#Q..I..FF	DEG_CRL4_CDT2_2_c	Q..I..FF	[NQ]..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq]..[ilmv]t[den][fhmy][fmy]	4	2.476	0.619	0.440	2.476	4.00	6.45	slimfinder#15120800001#28#Q..I..FF	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#28#Q..I..FF	DEG_CRL4_CDT2_2_d	Q..I..FF	[NQ]..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq]..[ilmv]t[den][fhmy][fmy]	4	2.476	0.619	0.440	2.476	4.00	5.68	slimfinder#15120800001#28#Q..I..FF	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#28#Q..I..FF	LIG_PCNA_PIPBox_1_a	Q..I..FF	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	Q.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	4	2.900	0.917	0.680	3.668	4.00	3.16	slimfinder#15120800001#28#Q..I..FF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#28#Q..I..FF	LIG_PCNA_PIPBox_1_b	Q..I..FF	^.{0,3}.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	q.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	3	1.900	0.601	0.446	1.803	4.00	3.16	slimfinder#15120800001#28#Q..I..FF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 2/2
comparimotif	elm2015	slimfinder#15120800001#28#Q..I..FF	TRG_Golgi_diPhe_1	Q..I..FF	Q.{6,6}FF.{6,7}$	Variant Subsequence	Degenerate Parent	Q..i..fF	2	2.000	0.500	0.500	1.000	4.00	4.00	slimfinder#15120800001#28#Q..I..FF	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#29#Q.[ST]..S.F	LIG_LIR_Apic_2	Q.[ST]..S.F	[EDST].{0,2}[WFY]..P	Variant Overlap	Degenerate Overlap	[dest].[fwy]	2	1.171	0.539	0.585	1.079	3.77	2.17	slimfinder#15120800001#29#Q.[ST]..S.F	Apicomplexa-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#29#Q.[ST]..S.F	LIG_LIR_Gen_1	Q.[ST]..S.F	[EDST].{0,2}[WFY]..[ILV]	Variant Overlap	Degenerate Overlap	[dest].[fwy]	2	1.171	0.649	0.585	1.298	3.77	1.80	slimfinder#15120800001#29#Q.[ST]..S.F	Canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [21 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#29#Q.[ST]..S.F	LIG_LIR_Nem_3	Q.[ST]..S.F	[EDST].{0,2}[WFY]..[ILVFY]	Variant Overlap	Degenerate Overlap	[dest].[fwy]	2	1.171	0.717	0.585	1.433	3.77	1.63	slimfinder#15120800001#29#Q.[ST]..S.F	Nematode-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#29#Q.[ST]..S.F	LIG_PCNA_PIPBox_1_a	Q.[ST]..S.F	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	Q.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	4	1.878	0.594	0.372	2.376	3.77	3.16	slimfinder#15120800001#29#Q.[ST]..S.F	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#29#Q.[ST]..S.F	LIG_PDZ_Class_1	Q.[ST]..S.F	...[ST].[ACVILF]$	Variant Overlap	Degenerate Overlap	[st]..[st].[acfilv]	2	1.171	0.539	0.423	1.079	3.77	2.17	slimfinder#15120800001#29#Q.[ST]..S.F	The C-terminal class 1 PDZ-binding motif is classically represented by a pattern like (ST)X(VIL)* [48 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#29#Q.[ST]..S.F	MOD_CK1_1	Q.[ST]..S.F	S..([ST])...	Complex Overlap	Complex Overlap	[st]..[st].f	2	1.537	0.869	0.512	1.738	3.77	1.77	slimfinder#15120800001#29#Q.[ST]..S.F	CK1 phosphorylation site [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#29#Q.[ST]..S.F	MOD_NEK2_1	Q.[ST]..S.F	[FLM][^P][^P]([ST])[^DEP][^DE]	Complex Overlap	Complex Overlap	[^p][^p][ST][^ped][^ed]	2	0.786	0.515	0.419	1.030	3.77	1.53	slimfinder#15120800001#29#Q.[ST]..S.F	NEK2 phosphorylation motif with preferred Phe, Leu or Met in the -3 position to compensate for less favorable residues in the +1 and +2 position. [3 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#29#Q.[ST]..S.F	TRG_Golgi_diPhe_1	Q.[ST]..S.F	Q.{6,6}FF.{6,7}$	Variant Subsequence	Degenerate Parent	Q.[st]..s.F	2	2.000	0.531	0.531	1.061	3.77	4.00	slimfinder#15120800001#29#Q.[ST]..S.F	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#3#Q.[ST][IL]..FF	CLV_PCSK_SKI1_1	Q.[ST][IL]..FF	[RK].[AILMFV][LTKF].	Complex Overlap	Complex Overlap	[kr].[afilmv][fklt]	2	0.939	0.550	0.339	1.100	4.54	1.71	slimfinder#15120800001#3#Q.[ST][IL]..FF	Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#3#Q.[ST][IL]..FF	DEG_CRL4_CDT2_1_c	Q.[ST][IL]..FF	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq].[st][ilmv][st][den][fy][fy]	4	2.843	0.627	0.479	2.506	4.54	6.59	slimfinder#15120800001#3#Q.[ST][IL]..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#3#Q.[ST][IL]..FF	DEG_CRL4_CDT2_1_d	Q.[ST][IL]..FF	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq].[st][ilmv][st][den][fy][fy]	4	2.843	0.627	0.479	2.506	4.54	5.82	slimfinder#15120800001#3#Q.[ST][IL]..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#3#Q.[ST][IL]..FF	DEG_CRL4_CDT2_2_c	Q.[ST][IL]..FF	[NQ]..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq].[st][ilmv]t[den][fhmy][fmy]	4	2.476	0.546	0.401	2.183	4.54	6.45	slimfinder#15120800001#3#Q.[ST][IL]..FF	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#3#Q.[ST][IL]..FF	DEG_CRL4_CDT2_2_d	Q.[ST][IL]..FF	[NQ]..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq].[st][ilmv]t[den][fhmy][fmy]	4	2.476	0.546	0.401	2.183	4.54	5.68	slimfinder#15120800001#3#Q.[ST][IL]..FF	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#3#Q.[ST][IL]..FF	LIG_14-3-3_2	Q.[ST][IL]..FF	R..[^P]([ST])[IVLM].	Complex Overlap	Complex Overlap	q[^p][ST][ilmv].	2	1.306	0.562	0.511	1.124	4.54	2.32	slimfinder#15120800001#3#Q.[ST][IL]..FF	Longer mode 2 interacting phospho-motif for 14-3-3 proteins with key conservation RxxxS#p. [7 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#3#Q.[ST][IL]..FF	LIG_LIR_Nem_3	Q.[ST][IL]..FF	[EDST].{0,2}[WFY]..[ILVFY]	Complex Parent	Complex Subsequence	[dest][il][fwy].f[filvy]	2	1.000	0.612	0.240	1.225	4.54	1.63	slimfinder#15120800001#3#Q.[ST][IL]..FF	Nematode-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#3#Q.[ST][IL]..FF	LIG_PCNA_PIPBox_1_a	Q.[ST][IL]..FF	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	Q.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	5	2.974	0.941	0.629	4.703	4.54	3.16	slimfinder#15120800001#3#Q.[ST][IL]..FF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#3#Q.[ST][IL]..FF	LIG_PCNA_PIPBox_1_b	Q.[ST][IL]..FF	^.{0,3}.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	q.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	4	1.974	0.624	0.418	2.498	4.54	3.16	slimfinder#15120800001#3#Q.[ST][IL]..FF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 2/2
comparimotif	elm2015	slimfinder#15120800001#3#Q.[ST][IL]..FF	LIG_WD40_WDR5_VDV_2	Q.[ST][IL]..FF	[EDSTY].{0,4}[VIPLA][TSDEKR][ILVA]	Complex Overlap	Complex Overlap	q[ailpv][dekrst][ailv]	2	0.939	0.504	0.313	1.007	4.54	1.86	slimfinder#15120800001#3#Q.[ST][IL]..FF	Fungi-specific variant of the WDR5-binding motif that binds to a cleft between blades 5 and 6 of the WD40 repeat domain of WDR5, opposite of the Win motif-binding site, to mediate assembly of histone modification complexes. [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#3#Q.[ST][IL]..FF	MOD_NEK2_1	Q.[ST][IL]..FF	[FLM][^P][^P]([ST])[^DEP][^DE]	Complex Overlap	Complex Overlap	[^p][^p][ST][^ped][^ed]	3	0.840	0.551	0.324	1.652	4.54	1.53	slimfinder#15120800001#3#Q.[ST][IL]..FF	NEK2 phosphorylation motif with preferred Phe, Leu or Met in the -3 position to compensate for less favorable residues in the +1 and +2 position. [3 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#3#Q.[ST][IL]..FF	MOD_NEK2_2	Q.[ST][IL]..FF	[WYPCAG][^P][^P]([ST])[IFCVML][KRHYF]	Complex Overlap	Complex Overlap	[^p][^p][ST][cfilmv][fhkry]	3	1.188	0.574	0.394	1.722	4.54	2.07	slimfinder#15120800001#3#Q.[ST][IL]..FF	NEK2 phosphorylation motif with specific set of residues in the +1 and +2 position to compensate for less favorable residues in the -3 position. [0 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#3#Q.[ST][IL]..FF	MOD_PK_1	Q.[ST][IL]..FF	[RK]..(S)[VI]..	Ugly Overlap	Ugly Overlap	q.[st][ilv]..	2	1.402	0.553	0.506	1.105	4.54	2.54	slimfinder#15120800001#3#Q.[ST][IL]..FF	Phosphorylase kinase phosphorylation site [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#3#Q.[ST][IL]..FF	TRG_Golgi_diPhe_1	Q.[ST][IL]..FF	Q.{6,6}FF.{6,7}$	Variant Subsequence	Degenerate Parent	Q.[st][il]..fF	2	2.000	0.500	0.441	1.000	4.54	4.00	slimfinder#15120800001#3#Q.[ST][IL]..FF	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#30#[KR]..TL..FF	CLV_PCSK_SKI1_1	[KR]..TL..FF	[RK].[AILMFV][LTKF].	Complex Parent	Complex Subsequence	[KR].[afilmv][fklt]l	2	1.306	0.765	0.412	1.529	4.77	1.71	slimfinder#15120800001#30#[KR]..TL..FF	Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#30#[KR]..TL..FF	DOC_CYCLIN_1	[KR]..TL..FF	[RK].L.{0,1}[FYLIVMP]	Complex Parent	Complex Subsequence	[KR].lt[filmpvy]	2	1.119	0.528	0.297	1.056	4.77	2.12	slimfinder#15120800001#30#[KR]..TL..FF	Substrate recognition site that interacts with cyclin and thereby increases phosphorylation by cyclin/cdk complexes. Predicted proteins should have a CDK phosphorylation site. Also used by cyclin/cdk inhibitors. [24 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#30#[KR]..TL..FF	DOC_MAPK_1_a	[KR]..TL..FF	[KR].{0,2}[KR].{2,4}[ILVM].[ILVF]	Complex Parent	Complex Subsequence	[KR][kr].t[ilmv].[filv]	2	1.306	0.500	0.320	1.000	4.77	2.61	slimfinder#15120800001#30#[KR]..TL..FF	MAPK interacting molecules (e.g. MAPKKs, substrates, phosphatases) carry docking motif that help to regulate specific interaction in the MAPK cascade. The classic motif approximates (R/K)xxxx#x# where # is a hydrophobic residue. [16 ELM instances] variant 1/3
comparimotif	elm2015	slimfinder#15120800001#30#[KR]..TL..FF	LIG_14-3-3_1	[KR]..TL..FF	R.[^P]([ST])[^P]P	Complex Parent	Complex Subsequence	[kr].[^p][st][^p]p	3	1.554	0.555	0.387	1.664	4.77	2.80	slimfinder#15120800001#30#[KR]..TL..FF	Mode 1 interacting phospho-motif for 14-3-3 proteins with key conservation RxxSxP. [16 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#30#[KR]..TL..FF	LIG_14-3-3_2	[KR]..TL..FF	R..[^P]([ST])[IVLM].	Complex Overlap	Complex Overlap	[kr].[^p][st][ilmv].	2	1.306	0.562	0.469	1.124	4.77	2.32	slimfinder#15120800001#30#[KR]..TL..FF	Longer mode 2 interacting phospho-motif for 14-3-3 proteins with key conservation RxxxS#p. [7 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#30#[KR]..TL..FF	LIG_14-3-3_3	[KR]..TL..FF	[RHK][STALV].([ST]).[PESRDIFTQ]	Complex Parent	Complex Subsequence	[hkr][alstv].[st]l[defipqrst]	2	1.402	0.658	0.401	1.316	4.77	2.13	slimfinder#15120800001#30#[KR]..TL..FF	Consensus derived from reported natural interactors which do not match the Mode 1 and Mode 2 ligands. [22 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#30#[KR]..TL..FF	LIG_LIR_Nem_3	[KR]..TL..FF	[EDST].{0,2}[WFY]..[ILVFY]	Complex Parent	Complex Subsequence	[dest]l[fwy].f[filvy]	2	1.000	0.612	0.216	1.225	4.77	1.63	slimfinder#15120800001#30#[KR]..TL..FF	Nematode-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#30#[KR]..TL..FF	LIG_PCNA_PIPBox_1_a	[KR]..TL..FF	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Overlap	Complex Overlap	q.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	4	1.974	0.624	0.381	2.498	4.77	3.16	slimfinder#15120800001#30#[KR]..TL..FF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#30#[KR]..TL..FF	LIG_PCNA_PIPBox_1_b	[KR]..TL..FF	^.{0,3}.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	[kr]..[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	4	1.974	0.624	0.398	2.498	4.77	3.16	slimfinder#15120800001#30#[KR]..TL..FF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 2/2
comparimotif	elm2015	slimfinder#15120800001#30#[KR]..TL..FF	LIG_WD40_WDR5_VDV_2	[KR]..TL..FF	[EDSTY].{0,4}[VIPLA][TSDEKR][ILVA]	Complex Parent	Complex Subsequence	[desty][ailpv][dekrst][ailv]	2	0.939	0.504	0.321	1.007	4.77	1.86	slimfinder#15120800001#30#[KR]..TL..FF	Fungi-specific variant of the WDR5-binding motif that binds to a cleft between blades 5 and 6 of the WD40 repeat domain of WDR5, opposite of the Win motif-binding site, to mediate assembly of histone modification complexes. [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#30#[KR]..TL..FF	MOD_LATS_1	[KR]..TL..FF	H.[KR]..([ST])[^P]	Variant Overlap	Degenerate Overlap	[KR]..[st][^p]	3	1.554	0.609	0.561	1.826	4.77	2.55	slimfinder#15120800001#30#[KR]..TL..FF	The LATS phosphorylation motif is recognised by the LATS kinases for Ser/Thr phosphorylation. Substrates are often found toward the end of the Hippo signalling pathway. [23 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#30#[KR]..TL..FF	MOD_PKA_1	[KR]..TL..FF	[RK][RK].([ST])[^P]..	Complex Parent	Complex Subsequence	[KR][kr].[st][^p]..	3	1.554	0.669	0.439	2.007	4.77	2.32	slimfinder#15120800001#30#[KR]..TL..FF	Main preference for PKA-type AGC kinase phosphorylation. [25 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#30#[KR]..TL..FF	MOD_PKB_1	[KR]..TL..FF	R.R..([ST])[^P]..	Complex Overlap	Complex Overlap	[kr]..[st][^p]..	3	1.554	0.558	0.518	1.674	4.77	2.79	slimfinder#15120800001#30#[KR]..TL..FF	PKB Phosphorylation site [20 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#30#[KR]..TL..FF	MOD_PLK	[KR]..TL..FF	.[DE].([ST])[ILFWMVA]..	Complex Parent	Complex Subsequence	[kr][de].[st][afilmvw]..	2	1.119	0.593	0.316	1.186	4.77	1.89	slimfinder#15120800001#30#[KR]..TL..FF	Site phosphorylated by the Polo-like kinase. [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#30#[KR]..TL..FF	TRG_LysEnd_APsAcLL_1	[KR]..TL..FF	[DERQ]...L[LVI]	Ugly Parent	Ugly Subsequence	[dekqr]..tL[ilv]	2	1.463	0.674	0.430	1.348	4.77	2.17	slimfinder#15120800001#30#[KR]..TL..FF	Sorting and internalisation signal found in the cytoplasmic juxta-membrane region of type I transmembrane proteins. Targets them from the Trans Golgi Network to the lysosomal-endosomal-melanosomal compartments. Interacts with adaptor protein (AP) complexes [16 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#31#Q.[ST]..SF	LIG_LIR_Apic_2	Q.[ST]..SF	[EDST].{0,2}[WFY]..P	Variant Overlap	Degenerate Overlap	[dest][fwy]	2	1.171	0.539	0.585	1.079	3.77	2.17	slimfinder#15120800001#31#Q.[ST]..SF	Apicomplexa-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#31#Q.[ST]..SF	LIG_LIR_Gen_1	Q.[ST]..SF	[EDST].{0,2}[WFY]..[ILV]	Variant Overlap	Degenerate Overlap	[dest][fwy]	2	1.171	0.649	0.585	1.298	3.77	1.80	slimfinder#15120800001#31#Q.[ST]..SF	Canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [21 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#31#Q.[ST]..SF	LIG_LIR_Nem_3	Q.[ST]..SF	[EDST].{0,2}[WFY]..[ILVFY]	Variant Overlap	Degenerate Overlap	[dest][fwy]	2	1.171	0.717	0.585	1.433	3.77	1.63	slimfinder#15120800001#31#Q.[ST]..SF	Nematode-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#31#Q.[ST]..SF	LIG_PCNA_PIPBox_1_a	Q.[ST]..SF	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	Q.[^fhwy][ilm][^p][acdegkmnqrst][fhm]	4	1.878	0.594	0.425	2.376	3.77	3.16	slimfinder#15120800001#31#Q.[ST]..SF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#31#Q.[ST]..SF	MOD_CK1_1	Q.[ST]..SF	S..([ST])...	Complex Overlap	Complex Overlap	[st]..[st]f	2	1.537	0.869	0.512	1.738	3.77	1.77	slimfinder#15120800001#31#Q.[ST]..SF	CK1 phosphorylation site [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#31#Q.[ST]..SF	MOD_NEK2_1	Q.[ST]..SF	[FLM][^P][^P]([ST])[^DEP][^DE]	Complex Overlap	Complex Overlap	[^p][^p][ST][^ped][^ed]	2	0.786	0.515	0.419	1.030	3.77	1.53	slimfinder#15120800001#31#Q.[ST]..SF	NEK2 phosphorylation motif with preferred Phe, Leu or Met in the -3 position to compensate for less favorable residues in the +1 and +2 position. [3 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#31#Q.[ST]..SF	MOD_PLK	Q.[ST]..SF	.[DE].([ST])[ILFWMVA]..	Complex Overlap	Complex Overlap	[st][de].[st][afilmvw]	2	1.119	0.593	0.316	1.186	3.77	1.89	slimfinder#15120800001#31#Q.[ST]..SF	Site phosphorylated by the Polo-like kinase. [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#32#L.SFF	CLV_PCSK_SKI1_1	L.SFF	[RK].[AILMFV][LTKF].	Complex Overlap	Complex Overlap	[kr]s[afilmv][fklt]	2	0.939	0.550	0.249	1.100	4.00	1.71	slimfinder#15120800001#32#L.SFF	Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#32#L.SFF	DEG_SCF_COI1_1	L.SFF	..[RK][RK].SL..F[FLM].[RK]R[HRK].[RK].	Variant Subsequence	Degenerate Parent	L.sF[flm]	3	2.633	0.658	0.658	1.975	4.00	8.34	slimfinder#15120800001#32#L.SFF	This degron motif is present in JAZ transcriptional repressor proteins and binds to the COI1 F-box protein of the SCF E3 ubiquitin ligase in a jasmonate-dependent manner. [9 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#32#L.SFF	DOC_USP7_1	L.SFF	[PA][^P][^FYWIL]S[^P]	Complex Overlap	Complex Overlap	[^p][acdeghkmnpqrstv]S[^p]	3	1.034	0.545	0.334	1.634	4.00	1.90	slimfinder#15120800001#32#L.SFF	The USP7 NTD domain binding motif variant based on the MDM2 and P53 interactions. [10 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#32#L.SFF	LIG_14-3-3_3	L.SFF	[RHK][STALV].([ST]).[PESRDIFTQ]	Variant Subsequence	Degenerate Parent	[alstv].[st]f[defipqrst]	3	1.498	0.703	0.374	2.109	4.00	2.13	slimfinder#15120800001#32#L.SFF	Consensus derived from reported natural interactors which do not match the Mode 1 and Mode 2 ligands. [22 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#32#L.SFF	LIG_LIR_Apic_2	L.SFF	[EDST].{0,2}[WFY]..P	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.539	0.390	1.079	4.00	2.17	slimfinder#15120800001#32#L.SFF	Apicomplexa-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#32#L.SFF	LIG_LIR_Gen_1	L.SFF	[EDST].{0,2}[WFY]..[ILV]	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.649	0.390	1.298	4.00	1.80	slimfinder#15120800001#32#L.SFF	Canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [21 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#32#L.SFF	LIG_LIR_Nem_3	L.SFF	[EDST].{0,2}[WFY]..[ILVFY]	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.717	0.390	1.433	4.00	1.63	slimfinder#15120800001#32#L.SFF	Nematode-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#32#L.SFF	LIG_PCNA_PIPBox_1_a	L.SFF	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	[ilm][^p][acdegkmnqrst][fhm][fmy]	4	2.070	0.655	0.515	2.619	4.00	3.16	slimfinder#15120800001#32#L.SFF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#32#L.SFF	LIG_PCNA_PIPBox_1_b	L.SFF	^.{0,3}.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	[ilm][^p][acdegkmnqrst][fhm][fmy]	4	2.070	0.655	0.515	2.619	4.00	3.16	slimfinder#15120800001#32#L.SFF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 2/2
comparimotif	elm2015	slimfinder#15120800001#32#L.SFF	LIG_PDZ_Class_1	L.SFF	...[ST].[ACVILF]$	Variant Subsequence	Degenerate Parent	l.[st]f[acfilv]	2	1.171	0.539	0.293	1.079	4.00	2.17	slimfinder#15120800001#32#L.SFF	The C-terminal class 1 PDZ-binding motif is classically represented by a pattern like (ST)X(VIL)* [48 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#32#L.SFF	MOD_NEK2_1	L.SFF	[FLM][^P][^P]([ST])[^DEP][^DE]	Complex Subsequence	Complex Parent	[^p][^p][st][^ped][^ed]	4	0.875	0.574	0.218	2.295	4.00	1.53	slimfinder#15120800001#32#L.SFF	NEK2 phosphorylation motif with preferred Phe, Leu or Met in the -3 position to compensate for less favorable residues in the +1 and +2 position. [3 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#32#L.SFF	MOD_NEK2_2	L.SFF	[WYPCAG][^P][^P]([ST])[IFCVML][KRHYF]	Complex Subsequence	Complex Parent	[^p][^p][st][cfilmv][fhkry]	4	1.650	0.798	0.411	3.190	4.00	2.07	slimfinder#15120800001#32#L.SFF	NEK2 phosphorylation motif with specific set of residues in the +1 and +2 position to compensate for less favorable residues in the -3 position. [0 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#32#L.SFF	TRG_Golgi_diPhe_1	L.SFF	Q.{6,6}FF.{6,7}$	Variant Subsequence	Degenerate Parent	l.sFF	2	2.000	0.500	0.500	1.000	4.00	4.00	slimfinder#15120800001#32#L.SFF	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#32#L.SFF	TRG_PEX_3	L.SFF	L..LL...L..F	Variant Overlap	Degenerate Overlap	L.sF	2	2.000	0.500	0.667	1.000	4.00	5.00	slimfinder#15120800001#32#L.SFF	LxxLLxxxLxxF motif is located in N-terminus of Pex19 receptors that are responsible for docking to Pex3 docking factor at cis side of peroxisomal membrane. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#33#Q.T..S.F	DOC_CKS1_1	Q.T..S.F	[MPVLIFWYQ].(T)P..	Complex Parent	Complex Subsequence	[filmpqvwy].Tp.s	2	1.267	0.559	0.317	1.118	4.00	2.27	slimfinder#15120800001#33#Q.T..S.F	Phospho-dependent motif that mediates docking of CDK substrates and regulators to cyclin-CDK-bound Cks1. [8 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#33#Q.T..S.F	LIG_LIR_Apic_2	Q.T..S.F	[EDST].{0,2}[WFY]..P	Variant Overlap	Degenerate Overlap	[dest].[fwy]	2	1.171	0.539	0.585	1.079	4.00	2.17	slimfinder#15120800001#33#Q.T..S.F	Apicomplexa-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#33#Q.T..S.F	LIG_LIR_Gen_1	Q.T..S.F	[EDST].{0,2}[WFY]..[ILV]	Variant Overlap	Degenerate Overlap	[dest].[fwy]	2	1.171	0.649	0.585	1.298	4.00	1.80	slimfinder#15120800001#33#Q.T..S.F	Canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [21 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#33#Q.T..S.F	LIG_LIR_Nem_3	Q.T..S.F	[EDST].{0,2}[WFY]..[ILVFY]	Variant Overlap	Degenerate Overlap	[dest].[fwy]	2	1.171	0.717	0.585	1.433	4.00	1.63	slimfinder#15120800001#33#Q.T..S.F	Nematode-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#33#Q.T..S.F	LIG_PCNA_PIPBox_1_a	Q.T..S.F	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	Q.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	4	1.878	0.594	0.355	2.376	4.00	3.16	slimfinder#15120800001#33#Q.T..S.F	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#33#Q.T..S.F	LIG_PDZ_Class_1	Q.T..S.F	...[ST].[ACVILF]$	Variant Overlap	Degenerate Overlap	t..[st].[acfilv]	2	1.171	0.539	0.390	1.079	4.00	2.17	slimfinder#15120800001#33#Q.T..S.F	The C-terminal class 1 PDZ-binding motif is classically represented by a pattern like (ST)X(VIL)* [48 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#33#Q.T..S.F	MOD_NEK2_1	Q.T..S.F	[FLM][^P][^P]([ST])[^DEP][^DE]	Complex Overlap	Complex Overlap	[^p][^p][st][^ped][^ed]	2	0.786	0.515	0.373	1.030	4.00	1.53	slimfinder#15120800001#33#Q.T..S.F	NEK2 phosphorylation motif with preferred Phe, Leu or Met in the -3 position to compensate for less favorable residues in the +1 and +2 position. [3 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#33#Q.T..S.F	TRG_Golgi_diPhe_1	Q.T..S.F	Q.{6,6}FF.{6,7}$	Variant Subsequence	Degenerate Parent	Q.t..s.F	2	2.000	0.500	0.500	1.000	4.00	4.00	slimfinder#15120800001#33#Q.T..S.F	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#34#I..FF.{1#2}K	CLV_PCSK_SKI1_1	I..FF.{1,2}K	[RK].[AILMFV][LTKF].	Complex Parent	Complex Subsequence	[kr].[afilmv][fklt].	2	0.939	0.550	0.339	1.100	4.00	1.71	slimfinder#15120800001#34#I..FF.{1#2}K	Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#34#I..FF.{1#2}K	DEG_CRL4_CDT2_1_a	I..FF.{1,2}K	..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv][st][den][fy][fy]..[kr]	4	2.843	0.711	0.526	2.843	4.00	5.82	slimfinder#15120800001#34#I..FF.{1#2}K	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 1/4
comparimotif	elm2015	slimfinder#15120800001#34#I..FF.{1#2}K	DEG_CRL4_CDT2_1_b	I..FF.{1,2}K	..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv][st][den][fy][fy]..[kr]	4	2.843	0.711	0.526	2.843	4.00	5.05	slimfinder#15120800001#34#I..FF.{1#2}K	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 2/4
comparimotif	elm2015	slimfinder#15120800001#34#I..FF.{1#2}K	DEG_CRL4_CDT2_1_c	I..FF.{1,2}K	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv][st][den][fy][fy]..[kr]	4	2.843	0.711	0.526	2.843	4.00	6.59	slimfinder#15120800001#34#I..FF.{1#2}K	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#34#I..FF.{1#2}K	DEG_CRL4_CDT2_1_d	I..FF.{1,2}K	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv][st][den][fy][fy]..[kr]	4	2.843	0.711	0.526	2.843	4.00	5.82	slimfinder#15120800001#34#I..FF.{1#2}K	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#34#I..FF.{1#2}K	DEG_CRL4_CDT2_2_a	I..FF.{1,2}K	..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv]t[den][fhmy][fmy]..[kr]	4	2.476	0.619	0.440	2.476	4.00	5.68	slimfinder#15120800001#34#I..FF.{1#2}K	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 1/4
comparimotif	elm2015	slimfinder#15120800001#34#I..FF.{1#2}K	DEG_CRL4_CDT2_2_b	I..FF.{1,2}K	..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv]t[den][fhmy][fmy]..[kr]	4	2.476	0.619	0.440	2.476	4.00	4.91	slimfinder#15120800001#34#I..FF.{1#2}K	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 2/4
comparimotif	elm2015	slimfinder#15120800001#34#I..FF.{1#2}K	DEG_CRL4_CDT2_2_c	I..FF.{1,2}K	[NQ]..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv]t[den][fhmy][fmy]..[kr]	4	2.476	0.619	0.440	2.476	4.00	6.45	slimfinder#15120800001#34#I..FF.{1#2}K	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#34#I..FF.{1#2}K	DEG_CRL4_CDT2_2_d	I..FF.{1,2}K	[NQ]..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv]t[den][fhmy][fmy]..[kr]	4	2.476	0.619	0.440	2.476	4.00	5.68	slimfinder#15120800001#34#I..FF.{1#2}K	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#34#I..FF.{1#2}K	LIG_BRCT_BRCA1_2	I..FF.{1,2}K	.(S)..F.K	Complex Match	Complex Match	is.fF.K	2	2.000	0.667	0.400	1.333	4.00	3.00	slimfinder#15120800001#34#I..FF.{1#2}K	Phosphopeptide motif which directly interacts with the BRCT (carboxy-terminal) domain of the Breast Cancer Gene BRCA1 with high affinity. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#34#I..FF.{1#2}K	LIG_OCRL_FandH_1	I..FF.{1,2}K	.F[^P][^P][KRIL]H[^P][^P][YLMFH][^P]...	Complex Overlap	Complex Overlap	.F[^p][^p][iklr]	3	1.554	0.504	0.515	1.511	4.00	3.09	slimfinder#15120800001#34#I..FF.{1#2}K	The F and H motif describes a 10-13-mer peptide sequence determined by a highly conserved phenylalanine and histidine residue surrounded by hydrophobic amino acids. A complex of ASH and RhoGAP-like domain binds this motif within a hydrophobic pocket. [3 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#34#I..FF.{1#2}K	LIG_PCNA_PIPBox_1_a	I..FF.{1,2}K	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	[ilm][^p][acdegkmnqrst][fhm][fmy].k	3	1.900	0.601	0.454	1.803	4.00	3.16	slimfinder#15120800001#34#I..FF.{1#2}K	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#34#I..FF.{1#2}K	LIG_PCNA_PIPBox_1_b	I..FF.{1,2}K	^.{0,3}.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	[ilm][^p][acdegkmnqrst][fhm][fmy].k	3	1.900	0.601	0.454	1.803	4.00	3.16	slimfinder#15120800001#34#I..FF.{1#2}K	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 2/2
comparimotif	elm2015	slimfinder#15120800001#34#I..FF.{1#2}K	TRG_Golgi_diPhe_1	I..FF.{1,2}K	Q.{6,6}FF.{6,7}$	Variant Subsequence	Degenerate Parent	i..FF.k	2	2.000	0.500	0.500	1.000	4.00	4.00	slimfinder#15120800001#34#I..FF.{1#2}K	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#35#Q.[ST][IL]..F	DEG_CRL4_CDT2_1_c	Q.[ST][IL]..F	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq].[st][ilmv][st][den][fy]	3	2.074	0.586	0.420	1.759	3.54	6.59	slimfinder#15120800001#35#Q.[ST][IL]..F	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#35#Q.[ST][IL]..F	DEG_CRL4_CDT2_1_d	Q.[ST][IL]..F	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq].[st][ilmv][st][den][fy]	3	2.074	0.586	0.420	1.759	3.54	5.82	slimfinder#15120800001#35#Q.[ST][IL]..F	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#35#Q.[ST][IL]..F	DEG_CRL4_CDT2_2_c	Q.[ST][IL]..F	[NQ]..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq].[st][ilmv]t[den][fhmy]	3	1.843	0.521	0.356	1.563	3.54	6.45	slimfinder#15120800001#35#Q.[ST][IL]..F	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#35#Q.[ST][IL]..F	DEG_CRL4_CDT2_2_d	Q.[ST][IL]..F	[NQ]..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq].[st][ilmv]t[den][fhmy]	3	1.843	0.521	0.356	1.563	3.54	5.68	slimfinder#15120800001#35#Q.[ST][IL]..F	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#35#Q.[ST][IL]..F	LIG_14-3-3_2	Q.[ST][IL]..F	R..[^P]([ST])[IVLM].	Complex Overlap	Complex Overlap	q[^p][ST][ilmv].	2	1.306	0.562	0.511	1.124	3.54	2.32	slimfinder#15120800001#35#Q.[ST][IL]..F	Longer mode 2 interacting phospho-motif for 14-3-3 proteins with key conservation RxxxS#p. [7 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#35#Q.[ST][IL]..F	LIG_PCNA_PIPBox_1_a	Q.[ST][IL]..F	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	Q.[^fhwy][ilm][^p][acdegkmnqrst][fhm]	4	2.341	0.740	0.628	2.962	3.54	3.16	slimfinder#15120800001#35#Q.[ST][IL]..F	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#35#Q.[ST][IL]..F	LIG_WD40_WDR5_VDV_2	Q.[ST][IL]..F	[EDSTY].{0,4}[VIPLA][TSDEKR][ILVA]	Complex Overlap	Complex Overlap	q[ailpv][dekrst][ailv]	2	0.939	0.504	0.313	1.007	3.54	1.86	slimfinder#15120800001#35#Q.[ST][IL]..F	Fungi-specific variant of the WDR5-binding motif that binds to a cleft between blades 5 and 6 of the WD40 repeat domain of WDR5, opposite of the Win motif-binding site, to mediate assembly of histone modification complexes. [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#35#Q.[ST][IL]..F	MOD_NEK2_1	Q.[ST][IL]..F	[FLM][^P][^P]([ST])[^DEP][^DE]	Complex Overlap	Complex Overlap	[^p][^p][ST][^ped][^ed]	3	0.840	0.551	0.324	1.652	3.54	1.53	slimfinder#15120800001#35#Q.[ST][IL]..F	NEK2 phosphorylation motif with preferred Phe, Leu or Met in the -3 position to compensate for less favorable residues in the +1 and +2 position. [3 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#35#Q.[ST][IL]..F	MOD_NEK2_2	Q.[ST][IL]..F	[WYPCAG][^P][^P]([ST])[IFCVML][KRHYF]	Complex Overlap	Complex Overlap	[^p][^p][ST][cfilmv][fhkry]	3	1.188	0.574	0.394	1.722	3.54	2.07	slimfinder#15120800001#35#Q.[ST][IL]..F	NEK2 phosphorylation motif with specific set of residues in the +1 and +2 position to compensate for less favorable residues in the -3 position. [0 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#35#Q.[ST][IL]..F	MOD_PK_1	Q.[ST][IL]..F	[RK]..(S)[VI]..	Ugly Overlap	Ugly Overlap	q.[st][ilv]..	2	1.402	0.553	0.506	1.105	3.54	2.54	slimfinder#15120800001#35#Q.[ST][IL]..F	Phosphorylase kinase phosphorylation site [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#35#Q.[ST][IL]..F	TRG_PEX_3	Q.[ST][IL]..F	L..LL...L..F	Complex Subsequence	Complex Parent	q.[st][il]..F	2	1.769	0.500	0.469	1.000	3.54	5.00	slimfinder#15120800001#35#Q.[ST][IL]..F	LxxLLxxxLxxF motif is located in N-terminus of Pex19 receptors that are responsible for docking to Pex3 docking factor at cis side of peroxisomal membrane. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#36#[KR]Q.TL..F	CLV_PCSK_SKI1_1	[KR]Q.TL..F	[RK].[AILMFV][LTKF].	Complex Parent	Complex Subsequence	[KR]q[afilmv][fklt]l	2	1.306	0.765	0.313	1.529	4.77	1.71	slimfinder#15120800001#36#[KR]Q.TL..F	Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#36#[KR]Q.TL..F	DOC_CYCLIN_1	[KR]Q.TL..F	[RK].L.{0,1}[FYLIVMP]	Complex Parent	Complex Subsequence	[KR]qlt[filmpvy]	2	1.119	0.528	0.235	1.056	4.77	2.12	slimfinder#15120800001#36#[KR]Q.TL..F	Substrate recognition site that interacts with cyclin and thereby increases phosphorylation by cyclin/cdk complexes. Predicted proteins should have a CDK phosphorylation site. Also used by cyclin/cdk inhibitors. [24 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#36#[KR]Q.TL..F	DOC_MAPK_1_a	[KR]Q.TL..F	[KR].{0,2}[KR].{2,4}[ILVM].[ILVF]	Complex Match	Complex Match	[KR]q[kr]tl[ilmv].[filv]	2	1.306	0.500	0.215	1.000	4.77	2.61	slimfinder#15120800001#36#[KR]Q.TL..F	MAPK interacting molecules (e.g. MAPKKs, substrates, phosphatases) carry docking motif that help to regulate specific interaction in the MAPK cascade. The classic motif approximates (R/K)xxxx#x# where # is a hydrophobic residue. [16 ELM instances] variant 1/3
comparimotif	elm2015	slimfinder#15120800001#36#[KR]Q.TL..F	LIG_14-3-3_1	[KR]Q.TL..F	R.[^P]([ST])[^P]P	Complex Parent	Complex Subsequence	[kr]q[^p][st][^p]p	3	1.554	0.555	0.310	1.664	4.77	2.80	slimfinder#15120800001#36#[KR]Q.TL..F	Mode 1 interacting phospho-motif for 14-3-3 proteins with key conservation RxxSxP. [16 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#36#[KR]Q.TL..F	LIG_14-3-3_2	[KR]Q.TL..F	R..[^P]([ST])[IVLM].	Complex Overlap	Complex Overlap	[kr]q[^p][st][ilmv].	2	1.306	0.562	0.345	1.124	4.77	2.32	slimfinder#15120800001#36#[KR]Q.TL..F	Longer mode 2 interacting phospho-motif for 14-3-3 proteins with key conservation RxxxS#p. [7 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#36#[KR]Q.TL..F	LIG_Clathr_ClatBox_1	[KR]Q.TL..F	L[IVLMF].[IVLMF][DE]	Complex Overlap	Complex Overlap	L[filmv].[filmv]	2	1.463	0.543	0.594	1.086	4.77	2.69	slimfinder#15120800001#36#[KR]Q.TL..F	Clathrin box motif found on cargo adaptor proteins, it interacts with the beta propeller structure located at the N-terminus of Clathrin heavy chain. [18 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#36#[KR]Q.TL..F	LIG_PCNA_PIPBox_1_a	[KR]Q.TL..F	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Overlap	Complex Overlap	Q.[^fhwy][ilm][^p][acdegkmnqrst][fhm]	4	2.341	0.740	0.559	2.962	4.77	3.16	slimfinder#15120800001#36#[KR]Q.TL..F	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#36#[KR]Q.TL..F	LIG_WD40_WDR5_VDV_2	[KR]Q.TL..F	[EDSTY].{0,4}[VIPLA][TSDEKR][ILVA]	Complex Overlap	Complex Overlap	[kr]q[ailpv][dekrst][ailv]	2	0.939	0.504	0.222	1.007	4.77	1.86	slimfinder#15120800001#36#[KR]Q.TL..F	Fungi-specific variant of the WDR5-binding motif that binds to a cleft between blades 5 and 6 of the WD40 repeat domain of WDR5, opposite of the Win motif-binding site, to mediate assembly of histone modification complexes. [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#36#[KR]Q.TL..F	MOD_LATS_1	[KR]Q.TL..F	H.[KR]..([ST])[^P]	Variant Overlap	Degenerate Overlap	[KR]q.[st][^p]	3	1.554	0.609	0.412	1.826	4.77	2.55	slimfinder#15120800001#36#[KR]Q.TL..F	The LATS phosphorylation motif is recognised by the LATS kinases for Ser/Thr phosphorylation. Substrates are often found toward the end of the Hippo signalling pathway. [23 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#36#[KR]Q.TL..F	MOD_PKB_1	[KR]Q.TL..F	R.R..([ST])[^P]..	Complex Overlap	Complex Overlap	[kr]q.[st][^p]..	3	1.554	0.558	0.389	1.674	4.77	2.79	slimfinder#15120800001#36#[KR]Q.TL..F	PKB Phosphorylation site [20 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#36#[KR]Q.TL..F	TRG_LysEnd_APsAcLL_1	[KR]Q.TL..F	[DERQ]...L[LVI]	Ugly Parent	Ugly Subsequence	[dekqr]q.tL[ilv]	2	1.463	0.674	0.332	1.348	4.77	2.17	slimfinder#15120800001#36#[KR]Q.TL..F	Sorting and internalisation signal found in the cytoplasmic juxta-membrane region of type I transmembrane proteins. Targets them from the Trans Golgi Network to the lysosomal-endosomal-melanosomal compartments. Interacts with adaptor protein (AP) complexes [16 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#37#Q.T.{1#2}S.{0#1}FF	CLV_PCSK_SKI1_1	Q.T.{1,2}S.{0,1}FF	[RK].[AILMFV][LTKF].	Complex Overlap	Complex Overlap	[kr]s[afilmv][fklt]	2	0.939	0.550	0.249	1.100	5.00	1.71	slimfinder#15120800001#37#Q.T.{1#2}S.{0#1}FF	Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#37#Q.T.{1#2}S.{0#1}FF	DEG_CRL4_CDT2_1_c	Q.T.{1,2}S.{0,1}FF	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq].t[ilmv][st][den][fy][fy]	4	3.074	0.615	0.498	2.460	5.00	6.59	slimfinder#15120800001#37#Q.T.{1#2}S.{0#1}FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#37#Q.T.{1#2}S.{0#1}FF	DEG_CRL4_CDT2_1_d	Q.T.{1,2}S.{0,1}FF	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq].t[ilmv][st][den][fy][fy]	4	3.074	0.615	0.498	2.460	5.00	5.82	slimfinder#15120800001#37#Q.T.{1#2}S.{0#1}FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#37#Q.T.{1#2}S.{0#1}FF	DOC_CKS1_1	Q.T.{1,2}S.{0,1}FF	[MPVLIFWYQ].(T)P..	Complex Parent	Complex Subsequence	[filmpqvwy].Tpsf	2	1.267	0.559	0.253	1.118	5.00	2.27	slimfinder#15120800001#37#Q.T.{1#2}S.{0#1}FF	Phospho-dependent motif that mediates docking of CDK substrates and regulators to cyclin-CDK-bound Cks1. [8 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#37#Q.T.{1#2}S.{0#1}FF	DOC_USP7_1	Q.T.{1,2}S.{0,1}FF	[PA][^P][^FYWIL]S[^P]	Complex Parent	Complex Subsequence	[ap][^p][acdeghkmnpqrstv]S[^p]	3	1.034	0.545	0.268	1.634	5.00	1.90	slimfinder#15120800001#37#Q.T.{1#2}S.{0#1}FF	The USP7 NTD domain binding motif variant based on the MDM2 and P53 interactions. [10 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#37#Q.T.{1#2}S.{0#1}FF	LIG_14-3-3_3	Q.T.{1,2}S.{0,1}FF	[RHK][STALV].([ST]).[PESRDIFTQ]	Complex Parent	Complex Subsequence	[hkr][alstv].[st]f[defipqrst]	3	1.498	0.703	0.323	2.109	5.00	2.13	slimfinder#15120800001#37#Q.T.{1#2}S.{0#1}FF	Consensus derived from reported natural interactors which do not match the Mode 1 and Mode 2 ligands. [22 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#37#Q.T.{1#2}S.{0#1}FF	LIG_BRCT_BRCA1_1	Q.T.{1,2}S.{0,1}FF	.(S)..F	Variant Parent	Degenerate Subsequence	.S.fF	2	2.000	1.000	0.667	2.000	5.00	2.00	slimfinder#15120800001#37#Q.T.{1#2}S.{0#1}FF	Phosphopeptide motif which directly interacts with the BRCT (carboxy-terminal) domain of the Breast Cancer Gene BRCA1 with low affinity [5 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#37#Q.T.{1#2}S.{0#1}FF	LIG_BRCT_BRCA1_2	Q.T.{1,2}S.{0,1}FF	.(S)..F.K	Variant Overlap	Degenerate Overlap	.S.fF	2	2.000	0.667	0.667	1.333	5.00	3.00	slimfinder#15120800001#37#Q.T.{1#2}S.{0#1}FF	Phosphopeptide motif which directly interacts with the BRCT (carboxy-terminal) domain of the Breast Cancer Gene BRCA1 with high affinity. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#37#Q.T.{1#2}S.{0#1}FF	LIG_LIR_Apic_2	Q.T.{1,2}S.{0,1}FF	[EDST].{0,2}[WFY]..P	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.539	0.390	1.079	5.00	2.17	slimfinder#15120800001#37#Q.T.{1#2}S.{0#1}FF	Apicomplexa-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#37#Q.T.{1#2}S.{0#1}FF	LIG_LIR_Gen_1	Q.T.{1,2}S.{0,1}FF	[EDST].{0,2}[WFY]..[ILV]	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.649	0.390	1.298	5.00	1.80	slimfinder#15120800001#37#Q.T.{1#2}S.{0#1}FF	Canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [21 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#37#Q.T.{1#2}S.{0#1}FF	LIG_LIR_Nem_3	Q.T.{1,2}S.{0,1}FF	[EDST].{0,2}[WFY]..[ILVFY]	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.717	0.390	1.433	5.00	1.63	slimfinder#15120800001#37#Q.T.{1#2}S.{0#1}FF	Nematode-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#37#Q.T.{1#2}S.{0#1}FF	LIG_PCNA_PIPBox_1_a	Q.T.{1,2}S.{0,1}FF	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	Q.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	5	2.512	0.794	0.444	3.972	5.00	3.16	slimfinder#15120800001#37#Q.T.{1#2}S.{0#1}FF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#37#Q.T.{1#2}S.{0#1}FF	LIG_PDZ_Class_1	Q.T.{1,2}S.{0,1}FF	...[ST].[ACVILF]$	Variant Overlap	Degenerate Overlap	.t.[st]f[acfilv]	2	1.171	0.539	0.293	1.079	5.00	2.17	slimfinder#15120800001#37#Q.T.{1#2}S.{0#1}FF	The C-terminal class 1 PDZ-binding motif is classically represented by a pattern like (ST)X(VIL)* [48 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#37#Q.T.{1#2}S.{0#1}FF	MOD_NEK2_1	Q.T.{1,2}S.{0,1}FF	[FLM][^P][^P]([ST])[^DEP][^DE]	Complex Parent	Complex Subsequence	[flm][^p][^p][st][^ped][^ed]	4	0.875	0.574	0.188	2.295	5.00	1.53	slimfinder#15120800001#37#Q.T.{1#2}S.{0#1}FF	NEK2 phosphorylation motif with preferred Phe, Leu or Met in the -3 position to compensate for less favorable residues in the +1 and +2 position. [3 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#37#Q.T.{1#2}S.{0#1}FF	MOD_NEK2_2	Q.T.{1,2}S.{0,1}FF	[WYPCAG][^P][^P]([ST])[IFCVML][KRHYF]	Complex Parent	Complex Subsequence	[acgpwy][^p][^p][st][cfilmv][fhkry]	4	1.650	0.798	0.373	3.190	5.00	2.07	slimfinder#15120800001#37#Q.T.{1#2}S.{0#1}FF	NEK2 phosphorylation motif with specific set of residues in the +1 and +2 position to compensate for less favorable residues in the -3 position. [0 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#37#Q.T.{1#2}S.{0#1}FF	MOD_PLK	Q.T.{1,2}S.{0,1}FF	.[DE].([ST])[ILFWMVA]..	Complex Overlap	Complex Overlap	t[de].[st][afilmvw]f	2	1.119	0.593	0.235	1.186	5.00	1.89	slimfinder#15120800001#37#Q.T.{1#2}S.{0#1}FF	Site phosphorylated by the Polo-like kinase. [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#37#Q.T.{1#2}S.{0#1}FF	TRG_Golgi_diPhe_1	Q.T.{1,2}S.{0,1}FF	Q.{6,6}FF.{6,7}$	Variant Subsequence	Degenerate Parent	Q.t..s.FF	3	3.000	0.750	0.600	2.250	5.00	4.00	slimfinder#15120800001#37#Q.T.{1#2}S.{0#1}FF	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#38#[ILM]..F[FY]	CLV_PCSK_SKI1_1	[ILM]..F[FY]	[RK].[AILMFV][LTKF].	Ugly Overlap	Ugly Overlap	[kr].[afilmv][fklty]	2	0.865	0.506	0.341	1.013	2.40	1.71	slimfinder#15120800001#38#[ILM]..F[FY]	Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#38#[ILM]..F[FY]	DEG_CRL4_CDT2_1_a	[ILM]..F[FY]	..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv][st][den][fy][FY]	3	2.074	0.864	0.545	2.591	2.40	5.82	slimfinder#15120800001#38#[ILM]..F[FY]	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 1/4
comparimotif	elm2015	slimfinder#15120800001#38#[ILM]..F[FY]	DEG_CRL4_CDT2_1_b	[ILM]..F[FY]	..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv][st][den][fy][FY]	3	2.074	0.864	0.545	2.591	2.40	5.05	slimfinder#15120800001#38#[ILM]..F[FY]	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 2/4
comparimotif	elm2015	slimfinder#15120800001#38#[ILM]..F[FY]	DEG_CRL4_CDT2_1_c	[ILM]..F[FY]	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv][st][den][fy][FY]	3	2.074	0.864	0.545	2.591	2.40	6.59	slimfinder#15120800001#38#[ILM]..F[FY]	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#38#[ILM]..F[FY]	DEG_CRL4_CDT2_1_d	[ILM]..F[FY]	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv][st][den][fy][FY]	3	2.074	0.864	0.545	2.591	2.40	5.82	slimfinder#15120800001#38#[ILM]..F[FY]	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#38#[ILM]..F[FY]	DEG_CRL4_CDT2_2_a	[ILM]..F[FY]	..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv]t[den][fhmy][fmy]	3	1.708	0.711	0.423	2.133	2.40	5.68	slimfinder#15120800001#38#[ILM]..F[FY]	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 1/4
comparimotif	elm2015	slimfinder#15120800001#38#[ILM]..F[FY]	DEG_CRL4_CDT2_2_b	[ILM]..F[FY]	..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv]t[den][fhmy][fmy]	3	1.708	0.711	0.423	2.133	2.40	4.91	slimfinder#15120800001#38#[ILM]..F[FY]	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 2/4
comparimotif	elm2015	slimfinder#15120800001#38#[ILM]..F[FY]	DEG_CRL4_CDT2_2_c	[ILM]..F[FY]	[NQ]..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv]t[den][fhmy][fmy]	3	1.708	0.711	0.423	2.133	2.40	6.45	slimfinder#15120800001#38#[ILM]..F[FY]	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#38#[ILM]..F[FY]	DEG_CRL4_CDT2_2_d	[ILM]..F[FY]	[NQ]..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv]t[den][fhmy][fmy]	3	1.708	0.711	0.423	2.133	2.40	5.68	slimfinder#15120800001#38#[ILM]..F[FY]	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#38#[ILM]..F[FY]	DEG_SCF_COI1_1	[ILM]..F[FY]	..[RK][RK].SL..F[FLM].[RK]R[HRK].[RK].	Ugly Subsequence	Ugly Parent	[ilm]..F[flmy]	3	2.171	0.904	0.784	2.711	2.40	8.34	slimfinder#15120800001#38#[ILM]..F[FY]	This degron motif is present in JAZ transcriptional repressor proteins and binds to the COI1 F-box protein of the SCF E3 ubiquitin ligase in a jasmonate-dependent manner. [9 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#38#[ILM]..F[FY]	LIG_PCNA_PIPBox_1_a	[ILM]..F[FY]	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	[ILM][^p][acdegkmnqrst][fhm][fmy]	3	1.900	0.791	0.734	2.373	2.40	3.16	slimfinder#15120800001#38#[ILM]..F[FY]	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#38#[ILM]..F[FY]	LIG_PCNA_PIPBox_1_b	[ILM]..F[FY]	^.{0,3}.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	[ILM][^p][acdegkmnqrst][fhm][fmy]	3	1.900	0.791	0.734	2.373	2.40	3.16	slimfinder#15120800001#38#[ILM]..F[FY]	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 2/2
comparimotif	elm2015	slimfinder#15120800001#38#[ILM]..F[FY]	TRG_ER_FFAT_1	[ILM]..F[FY]	[DE].{0,4}E[FY][FYK]D[AC].[ESTD]	Complex Overlap	Complex Overlap	[de]e[fy][fky]	2	1.402	0.584	0.396	1.167	2.40	5.48	slimfinder#15120800001#38#[ILM]..F[FY]	VAP-A/Scs2 MSP-domain binding FFAT (diphenylalanine [FF] in an Acidic Tract) motif [20 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#38#[ILM]..F[FY]	TRG_Golgi_diPhe_1	[ILM]..F[FY]	Q.{6,6}FF.{6,7}$	Complex Subsequence	Complex Parent	[ilm]..F[fy]	2	1.769	0.736	0.672	1.473	2.40	4.00	slimfinder#15120800001#38#[ILM]..F[FY]	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#38#[ILM]..F[FY]	TRG_PEX_3	[ILM]..F[FY]	L..LL...L..F	Degenerate Overlap	Variant Overlap	[ilm]..F	2	1.633	0.680	0.817	1.360	2.40	5.00	slimfinder#15120800001#38#[ILM]..F[FY]	LxxLLxxxLxxF motif is located in N-terminus of Pex19 receptors that are responsible for docking to Pex3 docking factor at cis side of peroxisomal membrane. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#39#[IL]..FF	CLV_PCSK_SKI1_1	[IL]..FF	[RK].[AILMFV][LTKF].	Complex Overlap	Complex Overlap	[kr].[afilmv][fklt]	2	0.939	0.550	0.339	1.100	2.77	1.71	slimfinder#15120800001#39#[IL]..FF	Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#39#[IL]..FF	DEG_CRL4_CDT2_1_a	[IL]..FF	..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv][st][den][fy][fy]	3	2.074	0.749	0.497	2.248	2.77	5.82	slimfinder#15120800001#39#[IL]..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 1/4
comparimotif	elm2015	slimfinder#15120800001#39#[IL]..FF	DEG_CRL4_CDT2_1_b	[IL]..FF	..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv][st][den][fy][fy]	3	2.074	0.749	0.497	2.248	2.77	5.05	slimfinder#15120800001#39#[IL]..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 2/4
comparimotif	elm2015	slimfinder#15120800001#39#[IL]..FF	DEG_CRL4_CDT2_1_c	[IL]..FF	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv][st][den][fy][fy]	3	2.074	0.749	0.497	2.248	2.77	6.59	slimfinder#15120800001#39#[IL]..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#39#[IL]..FF	DEG_CRL4_CDT2_1_d	[IL]..FF	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv][st][den][fy][fy]	3	2.074	0.749	0.497	2.248	2.77	5.82	slimfinder#15120800001#39#[IL]..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#39#[IL]..FF	DEG_CRL4_CDT2_2_a	[IL]..FF	..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv]t[den][fhmy][fmy]	3	1.708	0.617	0.388	1.850	2.77	5.68	slimfinder#15120800001#39#[IL]..FF	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 1/4
comparimotif	elm2015	slimfinder#15120800001#39#[IL]..FF	DEG_CRL4_CDT2_2_b	[IL]..FF	..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv]t[den][fhmy][fmy]	3	1.708	0.617	0.388	1.850	2.77	4.91	slimfinder#15120800001#39#[IL]..FF	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 2/4
comparimotif	elm2015	slimfinder#15120800001#39#[IL]..FF	DEG_CRL4_CDT2_2_c	[IL]..FF	[NQ]..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv]t[den][fhmy][fmy]	3	1.708	0.617	0.388	1.850	2.77	6.45	slimfinder#15120800001#39#[IL]..FF	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#39#[IL]..FF	DEG_CRL4_CDT2_2_d	[IL]..FF	[NQ]..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv]t[den][fhmy][fmy]	3	1.708	0.617	0.388	1.850	2.77	5.68	slimfinder#15120800001#39#[IL]..FF	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#39#[IL]..FF	DEG_SCF_COI1_1	[IL]..FF	..[RK][RK].SL..F[FLM].[RK]R[HRK].[RK].	Complex Subsequence	Complex Parent	[il]..F[flm]	3	2.402	0.868	0.801	2.603	2.77	8.34	slimfinder#15120800001#39#[IL]..FF	This degron motif is present in JAZ transcriptional repressor proteins and binds to the COI1 F-box protein of the SCF E3 ubiquitin ligase in a jasmonate-dependent manner. [9 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#39#[IL]..FF	LIG_PCNA_PIPBox_1_a	[IL]..FF	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	[ilm][^p][acdegkmnqrst][fhm][fmy]	3	1.900	0.686	0.643	2.059	2.77	3.16	slimfinder#15120800001#39#[IL]..FF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#39#[IL]..FF	LIG_PCNA_PIPBox_1_b	[IL]..FF	^.{0,3}.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	[ilm][^p][acdegkmnqrst][fhm][fmy]	3	1.900	0.686	0.643	2.059	2.77	3.16	slimfinder#15120800001#39#[IL]..FF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 2/2
comparimotif	elm2015	slimfinder#15120800001#39#[IL]..FF	TRG_ER_FFAT_1	[IL]..FF	[DE].{0,4}E[FY][FYK]D[AC].[ESTD]	Complex Overlap	Complex Overlap	[de]e[fy][fky]	2	1.402	0.506	0.372	1.013	2.77	5.48	slimfinder#15120800001#39#[IL]..FF	VAP-A/Scs2 MSP-domain binding FFAT (diphenylalanine [FF] in an Acidic Tract) motif [20 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#39#[IL]..FF	TRG_Golgi_diPhe_1	[IL]..FF	Q.{6,6}FF.{6,7}$	Variant Subsequence	Degenerate Parent	[il]..FF	2	2.000	0.722	0.722	1.445	2.77	4.00	slimfinder#15120800001#39#[IL]..FF	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#39#[IL]..FF	TRG_PEX_3	[IL]..FF	L..LL...L..F	Degenerate Overlap	Variant Overlap	[il]..F	2	1.769	0.639	0.884	1.278	2.77	5.00	slimfinder#15120800001#39#[IL]..FF	LxxLLxxxLxxF motif is located in N-terminus of Pex19 receptors that are responsible for docking to Pex3 docking factor at cis side of peroxisomal membrane. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#4#Q.TL..FF	CLV_PCSK_SKI1_1	Q.TL..FF	[RK].[AILMFV][LTKF].	Complex Overlap	Complex Overlap	[kr].[afilmv][fklt]	2	0.939	0.550	0.339	1.100	5.00	1.71	slimfinder#15120800001#4#Q.TL..FF	Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#4#Q.TL..FF	DEG_CRL4_CDT2_1_c	Q.TL..FF	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq].t[ilmv][st][den][fy][fy]	4	2.843	0.569	0.444	2.274	5.00	6.59	slimfinder#15120800001#4#Q.TL..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#4#Q.TL..FF	DEG_CRL4_CDT2_1_d	Q.TL..FF	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq].t[ilmv][st][den][fy][fy]	4	2.843	0.569	0.444	2.274	5.00	5.82	slimfinder#15120800001#4#Q.TL..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#4#Q.TL..FF	LIG_14-3-3_2	Q.TL..FF	R..[^P]([ST])[IVLM].	Complex Overlap	Complex Overlap	q[^p][st][ilmv].	2	1.306	0.562	0.433	1.124	5.00	2.32	slimfinder#15120800001#4#Q.TL..FF	Longer mode 2 interacting phospho-motif for 14-3-3 proteins with key conservation RxxxS#p. [7 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#4#Q.TL..FF	LIG_LIR_Nem_3	Q.TL..FF	[EDST].{0,2}[WFY]..[ILVFY]	Complex Parent	Complex Subsequence	[dest]l[fwy].f[filvy]	2	1.000	0.612	0.216	1.225	5.00	1.63	slimfinder#15120800001#4#Q.TL..FF	Nematode-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#4#Q.TL..FF	LIG_PCNA_PIPBox_1_a	Q.TL..FF	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	Q.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	5	2.974	0.941	0.573	4.703	5.00	3.16	slimfinder#15120800001#4#Q.TL..FF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#4#Q.TL..FF	LIG_PCNA_PIPBox_1_b	Q.TL..FF	^.{0,3}.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	q.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	4	1.974	0.624	0.381	2.498	5.00	3.16	slimfinder#15120800001#4#Q.TL..FF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 2/2
comparimotif	elm2015	slimfinder#15120800001#4#Q.TL..FF	LIG_WD40_WDR5_VDV_2	Q.TL..FF	[EDSTY].{0,4}[VIPLA][TSDEKR][ILVA]	Complex Overlap	Complex Overlap	q[ailpv][dekrst][ailv]	2	0.939	0.504	0.271	1.007	5.00	1.86	slimfinder#15120800001#4#Q.TL..FF	Fungi-specific variant of the WDR5-binding motif that binds to a cleft between blades 5 and 6 of the WD40 repeat domain of WDR5, opposite of the Win motif-binding site, to mediate assembly of histone modification complexes. [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#4#Q.TL..FF	MOD_NEK2_1	Q.TL..FF	[FLM][^P][^P]([ST])[^DEP][^DE]	Complex Overlap	Complex Overlap	[^p][^p][st][^ped][^ed]	3	0.840	0.551	0.275	1.652	5.00	1.53	slimfinder#15120800001#4#Q.TL..FF	NEK2 phosphorylation motif with preferred Phe, Leu or Met in the -3 position to compensate for less favorable residues in the +1 and +2 position. [3 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#4#Q.TL..FF	MOD_NEK2_2	Q.TL..FF	[WYPCAG][^P][^P]([ST])[IFCVML][KRHYF]	Complex Overlap	Complex Overlap	[^p][^p][st][cfilmv][fhkry]	3	1.188	0.574	0.341	1.722	5.00	2.07	slimfinder#15120800001#4#Q.TL..FF	NEK2 phosphorylation motif with specific set of residues in the +1 and +2 position to compensate for less favorable residues in the -3 position. [0 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#4#Q.TL..FF	TRG_Golgi_diPhe_1	Q.TL..FF	Q.{6,6}FF.{6,7}$	Variant Subsequence	Degenerate Parent	Q.tl..fF	2	2.000	0.500	0.400	1.000	5.00	4.00	slimfinder#15120800001#4#Q.TL..FF	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#40#TL.S.F	LIG_14-3-3_2	TL.S.F	R..[^P]([ST])[IVLM].	Variant Overlap	Degenerate Overlap	[st][ilmv].	2	1.306	0.562	0.653	1.124	4.00	2.32	slimfinder#15120800001#40#TL.S.F	Longer mode 2 interacting phospho-motif for 14-3-3 proteins with key conservation RxxxS#p. [7 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#40#TL.S.F	LIG_LIR_Apic_2	TL.S.F	[EDST].{0,2}[WFY]..P	Variant Overlap	Degenerate Overlap	[dest].[fwy]	2	1.171	0.539	0.585	1.079	4.00	2.17	slimfinder#15120800001#40#TL.S.F	Apicomplexa-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#40#TL.S.F	LIG_LIR_Gen_1	TL.S.F	[EDST].{0,2}[WFY]..[ILV]	Variant Overlap	Degenerate Overlap	[dest].[fwy]	2	1.171	0.649	0.585	1.298	4.00	1.80	slimfinder#15120800001#40#TL.S.F	Canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [21 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#40#TL.S.F	LIG_LIR_Nem_3	TL.S.F	[EDST].{0,2}[WFY]..[ILVFY]	Variant Overlap	Degenerate Overlap	[dest].[fwy]	2	1.171	0.717	0.585	1.433	4.00	1.63	slimfinder#15120800001#40#TL.S.F	Nematode-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#40#TL.S.F	LIG_PDZ_Class_1	TL.S.F	...[ST].[ACVILF]$	Variant Subsequence	Degenerate Parent	tl.[st].[acfilv]	2	1.171	0.539	0.293	1.079	4.00	2.17	slimfinder#15120800001#40#TL.S.F	The C-terminal class 1 PDZ-binding motif is classically represented by a pattern like (ST)X(VIL)* [48 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#40#TL.S.F	LIG_WD40_WDR5_VDV_2	TL.S.F	[EDSTY].{0,4}[VIPLA][TSDEKR][ILVA]	Variant Overlap	Degenerate Overlap	[dekrst][ailv]	2	0.939	0.504	0.470	1.007	4.00	1.86	slimfinder#15120800001#40#TL.S.F	Fungi-specific variant of the WDR5-binding motif that binds to a cleft between blades 5 and 6 of the WD40 repeat domain of WDR5, opposite of the Win motif-binding site, to mediate assembly of histone modification complexes. [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#40#TL.S.F	MOD_NEK2_1	TL.S.F	[FLM][^P][^P]([ST])[^DEP][^DE]	Complex Overlap	Complex Overlap	[st][^ped][^ed]	2	0.823	0.539	0.404	1.079	4.00	1.53	slimfinder#15120800001#40#TL.S.F	NEK2 phosphorylation motif with preferred Phe, Leu or Met in the -3 position to compensate for less favorable residues in the +1 and +2 position. [3 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#40#TL.S.F	MOD_NEK2_2	TL.S.F	[WYPCAG][^P][^P]([ST])[IFCVML][KRHYF]	Complex Overlap	Complex Overlap	[st][cfilmv][fhkry]	2	1.171	0.566	0.475	1.131	4.00	2.07	slimfinder#15120800001#40#TL.S.F	NEK2 phosphorylation motif with specific set of residues in the +1 and +2 position to compensate for less favorable residues in the -3 position. [0 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#40#TL.S.F	MOD_PLK	TL.S.F	.[DE].([ST])[ILFWMVA]..	Variant Overlap	Degenerate Overlap	[st][afilmvw].s	2	1.119	0.593	0.373	1.186	4.00	1.89	slimfinder#15120800001#40#TL.S.F	Site phosphorylated by the Polo-like kinase. [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#41#TL.SF	LIG_14-3-3_2	TL.SF	R..[^P]([ST])[IVLM].	Variant Overlap	Degenerate Overlap	[st][ilmv].	2	1.306	0.562	0.653	1.124	4.00	2.32	slimfinder#15120800001#41#TL.SF	Longer mode 2 interacting phospho-motif for 14-3-3 proteins with key conservation RxxxS#p. [7 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#41#TL.SF	LIG_Clathr_ClatBox_1	TL.SF	L[IVLMF].[IVLMF][DE]	Complex Overlap	Complex Overlap	L[filmv]s[filmv]	2	1.463	0.543	0.422	1.086	4.00	2.69	slimfinder#15120800001#41#TL.SF	Clathrin box motif found on cargo adaptor proteins, it interacts with the beta propeller structure located at the N-terminus of Clathrin heavy chain. [18 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#41#TL.SF	LIG_LIR_Apic_2	TL.SF	[EDST].{0,2}[WFY]..P	Variant Overlap	Degenerate Overlap	[dest][fwy]	2	1.171	0.539	0.585	1.079	4.00	2.17	slimfinder#15120800001#41#TL.SF	Apicomplexa-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#41#TL.SF	LIG_LIR_Gen_1	TL.SF	[EDST].{0,2}[WFY]..[ILV]	Variant Overlap	Degenerate Overlap	[dest][fwy]	2	1.171	0.649	0.585	1.298	4.00	1.80	slimfinder#15120800001#41#TL.SF	Canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [21 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#41#TL.SF	LIG_LIR_Nem_3	TL.SF	[EDST].{0,2}[WFY]..[ILVFY]	Variant Overlap	Degenerate Overlap	[dest][fwy]	2	1.171	0.717	0.585	1.433	4.00	1.63	slimfinder#15120800001#41#TL.SF	Nematode-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#41#TL.SF	LIG_WD40_WDR5_VDV_2	TL.SF	[EDSTY].{0,4}[VIPLA][TSDEKR][ILVA]	Variant Overlap	Degenerate Overlap	[dekrst][ailv]	2	0.939	0.504	0.470	1.007	4.00	1.86	slimfinder#15120800001#41#TL.SF	Fungi-specific variant of the WDR5-binding motif that binds to a cleft between blades 5 and 6 of the WD40 repeat domain of WDR5, opposite of the Win motif-binding site, to mediate assembly of histone modification complexes. [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#41#TL.SF	MOD_NEK2_1	TL.SF	[FLM][^P][^P]([ST])[^DEP][^DE]	Complex Overlap	Complex Overlap	[st][^ped][^ed]	2	0.823	0.539	0.404	1.079	4.00	1.53	slimfinder#15120800001#41#TL.SF	NEK2 phosphorylation motif with preferred Phe, Leu or Met in the -3 position to compensate for less favorable residues in the +1 and +2 position. [3 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#41#TL.SF	MOD_NEK2_2	TL.SF	[WYPCAG][^P][^P]([ST])[IFCVML][KRHYF]	Complex Overlap	Complex Overlap	[st][cfilmv][fhkry]	2	1.171	0.566	0.475	1.131	4.00	2.07	slimfinder#15120800001#41#TL.SF	NEK2 phosphorylation motif with specific set of residues in the +1 and +2 position to compensate for less favorable residues in the -3 position. [0 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#41#TL.SF	MOD_PLK	TL.SF	.[DE].([ST])[ILFWMVA]..	Variant Overlap	Degenerate Overlap	[st][afilmvw].s	2	1.119	0.593	0.373	1.186	4.00	1.89	slimfinder#15120800001#41#TL.SF	Site phosphorylated by the Polo-like kinase. [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#41#TL.SF	TRG_PEX_3	TL.SF	L..LL...L..F	Variant Subsequence	Degenerate Parent	tL.sF	2	2.000	0.500	0.500	1.000	4.00	5.00	slimfinder#15120800001#41#TL.SF	LxxLLxxxLxxF motif is located in N-terminus of Pex19 receptors that are responsible for docking to Pex3 docking factor at cis side of peroxisomal membrane. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#42#I..FF..K	CLV_PCSK_SKI1_1	I..FF..K	[RK].[AILMFV][LTKF].	Complex Parent	Complex Subsequence	[kr].[afilmv][fklt].	2	0.939	0.550	0.339	1.100	4.00	1.71	slimfinder#15120800001#42#I..FF..K	Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#42#I..FF..K	DEG_CRL4_CDT2_1_a	I..FF..K	..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv][st][den][fy][fy]..[kr]	4	2.843	0.711	0.526	2.843	4.00	5.82	slimfinder#15120800001#42#I..FF..K	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 1/4
comparimotif	elm2015	slimfinder#15120800001#42#I..FF..K	DEG_CRL4_CDT2_1_b	I..FF..K	..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv][st][den][fy][fy]..[kr]	4	2.843	0.711	0.526	2.843	4.00	5.05	slimfinder#15120800001#42#I..FF..K	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 2/4
comparimotif	elm2015	slimfinder#15120800001#42#I..FF..K	DEG_CRL4_CDT2_1_c	I..FF..K	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv][st][den][fy][fy]..[kr]	4	2.843	0.711	0.526	2.843	4.00	6.59	slimfinder#15120800001#42#I..FF..K	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#42#I..FF..K	DEG_CRL4_CDT2_1_d	I..FF..K	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv][st][den][fy][fy]..[kr]	4	2.843	0.711	0.526	2.843	4.00	5.82	slimfinder#15120800001#42#I..FF..K	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#42#I..FF..K	DEG_CRL4_CDT2_2_a	I..FF..K	..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv]t[den][fhmy][fmy]..[kr]	4	2.476	0.619	0.440	2.476	4.00	5.68	slimfinder#15120800001#42#I..FF..K	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 1/4
comparimotif	elm2015	slimfinder#15120800001#42#I..FF..K	DEG_CRL4_CDT2_2_b	I..FF..K	..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv]t[den][fhmy][fmy]..[kr]	4	2.476	0.619	0.440	2.476	4.00	4.91	slimfinder#15120800001#42#I..FF..K	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 2/4
comparimotif	elm2015	slimfinder#15120800001#42#I..FF..K	DEG_CRL4_CDT2_2_c	I..FF..K	[NQ]..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv]t[den][fhmy][fmy]..[kr]	4	2.476	0.619	0.440	2.476	4.00	6.45	slimfinder#15120800001#42#I..FF..K	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#42#I..FF..K	DEG_CRL4_CDT2_2_d	I..FF..K	[NQ]..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv]t[den][fhmy][fmy]..[kr]	4	2.476	0.619	0.440	2.476	4.00	5.68	slimfinder#15120800001#42#I..FF..K	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#42#I..FF..K	LIG_PCNA_PIPBox_1_a	I..FF..K	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Overlap	Complex Overlap	[ilm][^p][acdegkmnqrst][fhm][fmy]..	3	1.900	0.601	0.596	1.803	4.00	3.16	slimfinder#15120800001#42#I..FF..K	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#42#I..FF..K	LIG_PCNA_PIPBox_1_b	I..FF..K	^.{0,3}.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Overlap	Complex Overlap	[ilm][^p][acdegkmnqrst][fhm][fmy]..	3	1.900	0.601	0.596	1.803	4.00	3.16	slimfinder#15120800001#42#I..FF..K	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 2/2
comparimotif	elm2015	slimfinder#15120800001#42#I..FF..K	TRG_Golgi_diPhe_1	I..FF..K	Q.{6,6}FF.{6,7}$	Variant Subsequence	Degenerate Parent	i..FF..k	2	2.000	0.500	0.500	1.000	4.00	4.00	slimfinder#15120800001#42#I..FF..K	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#43#Q.SI..FF	CLV_PCSK_SKI1_1	Q.SI..FF	[RK].[AILMFV][LTKF].	Complex Overlap	Complex Overlap	[kr].[afilmv][fklt]	2	0.939	0.550	0.339	1.100	5.00	1.71	slimfinder#15120800001#43#Q.SI..FF	Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#43#Q.SI..FF	DEG_CRL4_CDT2_1_c	Q.SI..FF	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq].s[ilmv][st][den][fy][fy]	4	2.843	0.569	0.444	2.274	5.00	6.59	slimfinder#15120800001#43#Q.SI..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#43#Q.SI..FF	DEG_CRL4_CDT2_1_d	Q.SI..FF	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq].s[ilmv][st][den][fy][fy]	4	2.843	0.569	0.444	2.274	5.00	5.82	slimfinder#15120800001#43#Q.SI..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#43#Q.SI..FF	DOC_PP1_SILK_1	Q.SI..FF	.[GS]IL[KR][^DE]	Complex Parent	Complex Subsequence	.[gs]Il[kr][^ed]	3	1.804	0.505	0.378	1.515	5.00	3.57	slimfinder#15120800001#43#Q.SI..FF	Protein phosphatase 1 catalytic subunit (PP1c) interacting motif that often cooperates with and is located N-terminal to the RVXF motif to dock proteins to PP1c. [14 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#43#Q.SI..FF	DOC_USP7_1	Q.SI..FF	[PA][^P][^FYWIL]S[^P]	Complex Overlap	Complex Overlap	[^p][acdeghkmnpqrstv]S[^p]	3	1.034	0.545	0.334	1.634	5.00	1.90	slimfinder#15120800001#43#Q.SI..FF	The USP7 NTD domain binding motif variant based on the MDM2 and P53 interactions. [10 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#43#Q.SI..FF	LIG_14-3-3_2	Q.SI..FF	R..[^P]([ST])[IVLM].	Complex Overlap	Complex Overlap	q[^p][st][ilmv].	2	1.306	0.562	0.433	1.124	5.00	2.32	slimfinder#15120800001#43#Q.SI..FF	Longer mode 2 interacting phospho-motif for 14-3-3 proteins with key conservation RxxxS#p. [7 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#43#Q.SI..FF	LIG_LIR_Nem_3	Q.SI..FF	[EDST].{0,2}[WFY]..[ILVFY]	Complex Parent	Complex Subsequence	[dest]i[fwy].f[filvy]	2	1.000	0.612	0.216	1.225	5.00	1.63	slimfinder#15120800001#43#Q.SI..FF	Nematode-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#43#Q.SI..FF	LIG_PCNA_PIPBox_1_a	Q.SI..FF	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	Q.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	5	2.974	0.941	0.573	4.703	5.00	3.16	slimfinder#15120800001#43#Q.SI..FF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#43#Q.SI..FF	LIG_PCNA_PIPBox_1_b	Q.SI..FF	^.{0,3}.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	q.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	4	1.974	0.624	0.381	2.498	5.00	3.16	slimfinder#15120800001#43#Q.SI..FF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 2/2
comparimotif	elm2015	slimfinder#15120800001#43#Q.SI..FF	LIG_WD40_WDR5_VDV_2	Q.SI..FF	[EDSTY].{0,4}[VIPLA][TSDEKR][ILVA]	Complex Overlap	Complex Overlap	q[ailpv][dekrst][ailv]	2	0.939	0.504	0.271	1.007	5.00	1.86	slimfinder#15120800001#43#Q.SI..FF	Fungi-specific variant of the WDR5-binding motif that binds to a cleft between blades 5 and 6 of the WD40 repeat domain of WDR5, opposite of the Win motif-binding site, to mediate assembly of histone modification complexes. [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#43#Q.SI..FF	MOD_NEK2_1	Q.SI..FF	[FLM][^P][^P]([ST])[^DEP][^DE]	Complex Overlap	Complex Overlap	[^p][^p][st][^ped][^ed]	3	0.840	0.551	0.275	1.652	5.00	1.53	slimfinder#15120800001#43#Q.SI..FF	NEK2 phosphorylation motif with preferred Phe, Leu or Met in the -3 position to compensate for less favorable residues in the +1 and +2 position. [3 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#43#Q.SI..FF	MOD_NEK2_2	Q.SI..FF	[WYPCAG][^P][^P]([ST])[IFCVML][KRHYF]	Complex Overlap	Complex Overlap	[^p][^p][st][cfilmv][fhkry]	3	1.188	0.574	0.341	1.722	5.00	2.07	slimfinder#15120800001#43#Q.SI..FF	NEK2 phosphorylation motif with specific set of residues in the +1 and +2 position to compensate for less favorable residues in the -3 position. [0 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#43#Q.SI..FF	MOD_PK_1	Q.SI..FF	[RK]..(S)[VI]..	Variant Overlap	Degenerate Overlap	q.S[iv]..	2	1.769	0.697	0.590	1.394	5.00	2.54	slimfinder#15120800001#43#Q.SI..FF	Phosphorylase kinase phosphorylation site [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#43#Q.SI..FF	TRG_Golgi_diPhe_1	Q.SI..FF	Q.{6,6}FF.{6,7}$	Variant Subsequence	Degenerate Parent	Q.si..fF	2	2.000	0.500	0.400	1.000	5.00	4.00	slimfinder#15120800001#43#Q.SI..FF	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#44#Q.T.{1#2}S.F	DEG_CRL4_CDT2_1_c	Q.T.{1,2}S.F	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq].t[ilmv][st][den][fy]	3	2.306	0.576	0.446	1.729	4.00	6.59	slimfinder#15120800001#44#Q.T.{1#2}S.F	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#44#Q.T.{1#2}S.F	DEG_CRL4_CDT2_1_d	Q.T.{1,2}S.F	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq].t[ilmv][st][den][fy]	3	2.306	0.576	0.446	1.729	4.00	5.82	slimfinder#15120800001#44#Q.T.{1#2}S.F	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#44#Q.T.{1#2}S.F	DOC_CKS1_1	Q.T.{1,2}S.F	[MPVLIFWYQ].(T)P..	Complex Parent	Complex Subsequence	[filmpqvwy].Tps.	2	1.267	0.559	0.317	1.118	4.00	2.27	slimfinder#15120800001#44#Q.T.{1#2}S.F	Phospho-dependent motif that mediates docking of CDK substrates and regulators to cyclin-CDK-bound Cks1. [8 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#44#Q.T.{1#2}S.F	DOC_USP7_1	Q.T.{1,2}S.F	[PA][^P][^FYWIL]S[^P]	Complex Parent	Complex Subsequence	[ap][^p][acdeghkmnpqrstv]S[^p]	2	1.017	0.536	0.353	1.071	4.00	1.90	slimfinder#15120800001#44#Q.T.{1#2}S.F	The USP7 NTD domain binding motif variant based on the MDM2 and P53 interactions. [10 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#44#Q.T.{1#2}S.F	LIG_14-3-3_3	Q.T.{1,2}S.F	[RHK][STALV].([ST]).[PESRDIFTQ]	Complex Parent	Complex Subsequence	[hkr][alstv].[st].[defipqrst]	3	1.498	0.703	0.412	2.109	4.00	2.13	slimfinder#15120800001#44#Q.T.{1#2}S.F	Consensus derived from reported natural interactors which do not match the Mode 1 and Mode 2 ligands. [22 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#44#Q.T.{1#2}S.F	LIG_LIR_Apic_2	Q.T.{1,2}S.F	[EDST].{0,2}[WFY]..P	Variant Overlap	Degenerate Overlap	[dest].[fwy]	2	1.171	0.539	0.585	1.079	4.00	2.17	slimfinder#15120800001#44#Q.T.{1#2}S.F	Apicomplexa-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#44#Q.T.{1#2}S.F	LIG_LIR_Gen_1	Q.T.{1,2}S.F	[EDST].{0,2}[WFY]..[ILV]	Variant Overlap	Degenerate Overlap	[dest].[fwy]	2	1.171	0.649	0.585	1.298	4.00	1.80	slimfinder#15120800001#44#Q.T.{1#2}S.F	Canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [21 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#44#Q.T.{1#2}S.F	LIG_LIR_Nem_3	Q.T.{1,2}S.F	[EDST].{0,2}[WFY]..[ILVFY]	Variant Overlap	Degenerate Overlap	[dest].[fwy]	2	1.171	0.717	0.585	1.433	4.00	1.63	slimfinder#15120800001#44#Q.T.{1#2}S.F	Nematode-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#44#Q.T.{1#2}S.F	LIG_PCNA_PIPBox_1_a	Q.T.{1,2}S.F	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	Q.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	4	1.878	0.594	0.355	2.376	4.00	3.16	slimfinder#15120800001#44#Q.T.{1#2}S.F	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#44#Q.T.{1#2}S.F	LIG_PDZ_Class_1	Q.T.{1,2}S.F	...[ST].[ACVILF]$	Variant Overlap	Degenerate Overlap	.t.[st].[acfilv]	2	1.171	0.539	0.390	1.079	4.00	2.17	slimfinder#15120800001#44#Q.T.{1#2}S.F	The C-terminal class 1 PDZ-binding motif is classically represented by a pattern like (ST)X(VIL)* [48 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#44#Q.T.{1#2}S.F	MOD_NEK2_1	Q.T.{1,2}S.F	[FLM][^P][^P]([ST])[^DEP][^DE]	Complex Parent	Complex Subsequence	[flm][^p][^p][st][^ped][^ed]	3	0.821	0.538	0.222	1.614	4.00	1.53	slimfinder#15120800001#44#Q.T.{1#2}S.F	NEK2 phosphorylation motif with preferred Phe, Leu or Met in the -3 position to compensate for less favorable residues in the +1 and +2 position. [3 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#44#Q.T.{1#2}S.F	MOD_NEK2_2	Q.T.{1,2}S.F	[WYPCAG][^P][^P]([ST])[IFCVML][KRHYF]	Complex Parent	Complex Subsequence	[acgpwy][^p][^p][st][cfilmv][fhkry]	3	1.249	0.603	0.327	1.810	4.00	2.07	slimfinder#15120800001#44#Q.T.{1#2}S.F	NEK2 phosphorylation motif with specific set of residues in the +1 and +2 position to compensate for less favorable residues in the -3 position. [0 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#44#Q.T.{1#2}S.F	TRG_Golgi_diPhe_1	Q.T.{1,2}S.F	Q.{6,6}FF.{6,7}$	Variant Subsequence	Degenerate Parent	Q.t..s.F	2	2.000	0.500	0.500	1.000	4.00	4.00	slimfinder#15120800001#44#Q.T.{1#2}S.F	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#45#Q.T..S.{0#1}F	DOC_CKS1_1	Q.T..S.{0,1}F	[MPVLIFWYQ].(T)P..	Complex Parent	Complex Subsequence	[filmpqvwy].Tp.s	2	1.267	0.559	0.317	1.118	4.00	2.27	slimfinder#15120800001#45#Q.T..S.{0#1}F	Phospho-dependent motif that mediates docking of CDK substrates and regulators to cyclin-CDK-bound Cks1. [8 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#45#Q.T..S.{0#1}F	LIG_LIR_Apic_2	Q.T..S.{0,1}F	[EDST].{0,2}[WFY]..P	Variant Overlap	Degenerate Overlap	[dest][fwy]	2	1.171	0.539	0.585	1.079	4.00	2.17	slimfinder#15120800001#45#Q.T..S.{0#1}F	Apicomplexa-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#45#Q.T..S.{0#1}F	LIG_LIR_Gen_1	Q.T..S.{0,1}F	[EDST].{0,2}[WFY]..[ILV]	Variant Overlap	Degenerate Overlap	[dest][fwy]	2	1.171	0.649	0.585	1.298	4.00	1.80	slimfinder#15120800001#45#Q.T..S.{0#1}F	Canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [21 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#45#Q.T..S.{0#1}F	LIG_LIR_Nem_3	Q.T..S.{0,1}F	[EDST].{0,2}[WFY]..[ILVFY]	Variant Overlap	Degenerate Overlap	[dest][fwy]	2	1.171	0.717	0.585	1.433	4.00	1.63	slimfinder#15120800001#45#Q.T..S.{0#1}F	Nematode-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#45#Q.T..S.{0#1}F	LIG_PCNA_PIPBox_1_a	Q.T..S.{0,1}F	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	Q.[^fhwy][ilm][^p][acdegkmnqrst][fhm]	4	1.878	0.594	0.404	2.376	4.00	3.16	slimfinder#15120800001#45#Q.T..S.{0#1}F	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#45#Q.T..S.{0#1}F	LIG_PDZ_Class_1	Q.T..S.{0,1}F	...[ST].[ACVILF]$	Variant Overlap	Degenerate Overlap	t..[st].[acfilv]	2	1.171	0.539	0.390	1.079	4.00	2.17	slimfinder#15120800001#45#Q.T..S.{0#1}F	The C-terminal class 1 PDZ-binding motif is classically represented by a pattern like (ST)X(VIL)* [48 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#45#Q.T..S.{0#1}F	MOD_NEK2_1	Q.T..S.{0,1}F	[FLM][^P][^P]([ST])[^DEP][^DE]	Complex Overlap	Complex Overlap	[^p][^p][st][^ped][^ed]	2	0.786	0.515	0.373	1.030	4.00	1.53	slimfinder#15120800001#45#Q.T..S.{0#1}F	NEK2 phosphorylation motif with preferred Phe, Leu or Met in the -3 position to compensate for less favorable residues in the +1 and +2 position. [3 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#45#Q.T..S.{0#1}F	MOD_PLK	Q.T..S.{0,1}F	.[DE].([ST])[ILFWMVA]..	Complex Overlap	Complex Overlap	t[de].[st][afilmvw]	2	1.119	0.593	0.297	1.186	4.00	1.89	slimfinder#15120800001#45#Q.T..S.{0#1}F	Site phosphorylated by the Polo-like kinase. [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#45#Q.T..S.{0#1}F	TRG_Golgi_diPhe_1	Q.T..S.{0,1}F	Q.{6,6}FF.{6,7}$	Variant Subsequence	Degenerate Parent	Q.t..s.F	2	2.000	0.500	0.500	1.000	4.00	4.00	slimfinder#15120800001#45#Q.T..S.{0#1}F	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#46#L..FF	CLV_PCSK_SKI1_1	L..FF	[RK].[AILMFV][LTKF].	Complex Overlap	Complex Overlap	[kr].[afilmv][fklt]	2	0.939	0.550	0.339	1.100	3.00	1.71	slimfinder#15120800001#46#L..FF	Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#46#L..FF	DEG_CRL4_CDT2_1_a	L..FF	..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv][st][den][fy][fy]	3	2.074	0.691	0.471	2.074	3.00	5.82	slimfinder#15120800001#46#L..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 1/4
comparimotif	elm2015	slimfinder#15120800001#46#L..FF	DEG_CRL4_CDT2_1_b	L..FF	..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv][st][den][fy][fy]	3	2.074	0.691	0.471	2.074	3.00	5.05	slimfinder#15120800001#46#L..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 2/4
comparimotif	elm2015	slimfinder#15120800001#46#L..FF	DEG_CRL4_CDT2_1_c	L..FF	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv][st][den][fy][fy]	3	2.074	0.691	0.471	2.074	3.00	6.59	slimfinder#15120800001#46#L..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#46#L..FF	DEG_CRL4_CDT2_1_d	L..FF	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv][st][den][fy][fy]	3	2.074	0.691	0.471	2.074	3.00	5.82	slimfinder#15120800001#46#L..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#46#L..FF	DEG_CRL4_CDT2_2_a	L..FF	..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv]t[den][fhmy][fmy]	3	1.708	0.569	0.369	1.708	3.00	5.68	slimfinder#15120800001#46#L..FF	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 1/4
comparimotif	elm2015	slimfinder#15120800001#46#L..FF	DEG_CRL4_CDT2_2_b	L..FF	..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv]t[den][fhmy][fmy]	3	1.708	0.569	0.369	1.708	3.00	4.91	slimfinder#15120800001#46#L..FF	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 2/4
comparimotif	elm2015	slimfinder#15120800001#46#L..FF	DEG_CRL4_CDT2_2_c	L..FF	[NQ]..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv]t[den][fhmy][fmy]	3	1.708	0.569	0.369	1.708	3.00	6.45	slimfinder#15120800001#46#L..FF	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#46#L..FF	DEG_CRL4_CDT2_2_d	L..FF	[NQ]..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv]t[den][fhmy][fmy]	3	1.708	0.569	0.369	1.708	3.00	5.68	slimfinder#15120800001#46#L..FF	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#46#L..FF	DEG_SCF_COI1_1	L..FF	..[RK][RK].SL..F[FLM].[RK]R[HRK].[RK].	Variant Subsequence	Degenerate Parent	L..F[flm]	3	2.633	0.878	0.878	2.633	3.00	8.34	slimfinder#15120800001#46#L..FF	This degron motif is present in JAZ transcriptional repressor proteins and binds to the COI1 F-box protein of the SCF E3 ubiquitin ligase in a jasmonate-dependent manner. [9 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#46#L..FF	LIG_PCNA_PIPBox_1_a	L..FF	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	[ilm][^p][acdegkmnqrst][fhm][fmy]	3	1.900	0.633	0.596	1.900	3.00	3.16	slimfinder#15120800001#46#L..FF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#46#L..FF	LIG_PCNA_PIPBox_1_b	L..FF	^.{0,3}.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	[ilm][^p][acdegkmnqrst][fhm][fmy]	3	1.900	0.633	0.596	1.900	3.00	3.16	slimfinder#15120800001#46#L..FF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 2/2
comparimotif	elm2015	slimfinder#15120800001#46#L..FF	TRG_Golgi_diPhe_1	L..FF	Q.{6,6}FF.{6,7}$	Variant Subsequence	Degenerate Parent	l..FF	2	2.000	0.667	0.667	1.333	3.00	4.00	slimfinder#15120800001#46#L..FF	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#46#L..FF	TRG_PEX_3	L..FF	L..LL...L..F	Exact Overlap	Exact Overlap	L..F	2	2.000	0.667	1.000	1.333	3.00	5.00	slimfinder#15120800001#46#L..FF	LxxLLxxxLxxF motif is located in N-terminus of Pex19 receptors that are responsible for docking to Pex3 docking factor at cis side of peroxisomal membrane. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#47#[ILMV]..F[FY]	CLV_PCSK_SKI1_1	[ILMV]..F[FY]	[RK].[AILMFV][LTKF].	Ugly Overlap	Ugly Overlap	[kr].[afilmv][fklty]	2	0.865	0.506	0.341	1.013	2.31	1.71	slimfinder#15120800001#47#[ILMV]..F[FY]	Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#47#[ILMV]..F[FY]	DEG_CRL4_CDT2_1_a	[ILMV]..F[FY]	..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[ILMV][st][den][fy][FY]	3	2.074	0.900	0.559	2.699	2.31	5.82	slimfinder#15120800001#47#[ILMV]..F[FY]	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 1/4
comparimotif	elm2015	slimfinder#15120800001#47#[ILMV]..F[FY]	DEG_CRL4_CDT2_1_b	[ILMV]..F[FY]	..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[ILMV][st][den][fy][FY]	3	2.074	0.900	0.559	2.699	2.31	5.05	slimfinder#15120800001#47#[ILMV]..F[FY]	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 2/4
comparimotif	elm2015	slimfinder#15120800001#47#[ILMV]..F[FY]	DEG_CRL4_CDT2_1_c	[ILMV]..F[FY]	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[ILMV][st][den][fy][FY]	3	2.074	0.900	0.559	2.699	2.31	6.59	slimfinder#15120800001#47#[ILMV]..F[FY]	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#47#[ILMV]..F[FY]	DEG_CRL4_CDT2_1_d	[ILMV]..F[FY]	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[ILMV][st][den][fy][FY]	3	2.074	0.900	0.559	2.699	2.31	5.82	slimfinder#15120800001#47#[ILMV]..F[FY]	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#47#[ILMV]..F[FY]	DEG_CRL4_CDT2_2_a	[ILMV]..F[FY]	..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[ILMV]t[den][fhmy][fmy]	3	1.708	0.741	0.434	2.222	2.31	5.68	slimfinder#15120800001#47#[ILMV]..F[FY]	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 1/4
comparimotif	elm2015	slimfinder#15120800001#47#[ILMV]..F[FY]	DEG_CRL4_CDT2_2_b	[ILMV]..F[FY]	..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[ILMV]t[den][fhmy][fmy]	3	1.708	0.741	0.434	2.222	2.31	4.91	slimfinder#15120800001#47#[ILMV]..F[FY]	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 2/4
comparimotif	elm2015	slimfinder#15120800001#47#[ILMV]..F[FY]	DEG_CRL4_CDT2_2_c	[ILMV]..F[FY]	[NQ]..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[ILMV]t[den][fhmy][fmy]	3	1.708	0.741	0.434	2.222	2.31	6.45	slimfinder#15120800001#47#[ILMV]..F[FY]	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#47#[ILMV]..F[FY]	DEG_CRL4_CDT2_2_d	[ILMV]..F[FY]	[NQ]..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[ILMV]t[den][fhmy][fmy]	3	1.708	0.741	0.434	2.222	2.31	5.68	slimfinder#15120800001#47#[ILMV]..F[FY]	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#47#[ILMV]..F[FY]	DEG_SCF_COI1_1	[ILMV]..F[FY]	..[RK][RK].SL..F[FLM].[RK]R[HRK].[RK].	Ugly Subsequence	Ugly Parent	[ilmv]..F[flmy]	3	2.074	0.900	0.749	2.699	2.31	8.34	slimfinder#15120800001#47#[ILMV]..F[FY]	This degron motif is present in JAZ transcriptional repressor proteins and binds to the COI1 F-box protein of the SCF E3 ubiquitin ligase in a jasmonate-dependent manner. [9 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#47#[ILMV]..F[FY]	LIG_PAM2_2_b	[ILMV]..F[FY]	[FL][PV][APQ]EF.PG.PWKG.	Ugly Subsequence	Ugly Parent	[ilmpv][apq]eF[fy]	2	1.463	0.634	0.351	1.269	2.31	10.17	slimfinder#15120800001#47#[ILMV]..F[FY]	Peptide ligand motif that directly binds to the MLLE/PABC domain found in poly(A)-binding proteins and HYD E3 ubiquitin ligases, mainly via a common central core region and a complementary C-terminal region. [4 ELM instances] variant 2/2
comparimotif	elm2015	slimfinder#15120800001#47#[ILMV]..F[FY]	LIG_PCNA_PIPBox_1_a	[ILMV]..F[FY]	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	[ilmv][^p][acdegkmnqrst][fhm][fmy]	3	1.804	0.782	0.697	2.347	2.31	3.16	slimfinder#15120800001#47#[ILMV]..F[FY]	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#47#[ILMV]..F[FY]	LIG_PCNA_PIPBox_1_b	[ILMV]..F[FY]	^.{0,3}.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	[ilmv][^p][acdegkmnqrst][fhm][fmy]	3	1.804	0.782	0.697	2.347	2.31	3.16	slimfinder#15120800001#47#[ILMV]..F[FY]	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 2/2
comparimotif	elm2015	slimfinder#15120800001#47#[ILMV]..F[FY]	TRG_ER_FFAT_1	[ILMV]..F[FY]	[DE].{0,4}E[FY][FYK]D[AC].[ESTD]	Complex Overlap	Complex Overlap	[de]e[fy][fky]	2	1.402	0.608	0.396	1.216	2.31	5.48	slimfinder#15120800001#47#[ILMV]..F[FY]	VAP-A/Scs2 MSP-domain binding FFAT (diphenylalanine [FF] in an Acidic Tract) motif [20 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#47#[ILMV]..F[FY]	TRG_Golgi_diPhe_1	[ILMV]..F[FY]	Q.{6,6}FF.{6,7}$	Complex Subsequence	Complex Parent	[ilmv]..F[fy]	2	1.769	0.767	0.697	1.534	2.31	4.00	slimfinder#15120800001#47#[ILMV]..F[FY]	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#47#[ILMV]..F[FY]	TRG_PEX_3	[ILMV]..F[FY]	L..LL...L..F	Degenerate Overlap	Variant Overlap	[ilmv]..F	2	1.537	0.667	0.769	1.333	2.31	5.00	slimfinder#15120800001#47#[ILMV]..F[FY]	LxxLLxxxLxxF motif is located in N-terminus of Pex19 receptors that are responsible for docking to Pex3 docking factor at cis side of peroxisomal membrane. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#48#I..FF	CLV_PCSK_SKI1_1	I..FF	[RK].[AILMFV][LTKF].	Complex Overlap	Complex Overlap	[kr].[afilmv][fklt]	2	0.939	0.550	0.339	1.100	3.00	1.71	slimfinder#15120800001#48#I..FF	Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#48#I..FF	DEG_CRL4_CDT2_1_a	I..FF	..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv][st][den][fy][fy]	3	2.074	0.691	0.471	2.074	3.00	5.82	slimfinder#15120800001#48#I..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 1/4
comparimotif	elm2015	slimfinder#15120800001#48#I..FF	DEG_CRL4_CDT2_1_b	I..FF	..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv][st][den][fy][fy]	3	2.074	0.691	0.471	2.074	3.00	5.05	slimfinder#15120800001#48#I..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 2/4
comparimotif	elm2015	slimfinder#15120800001#48#I..FF	DEG_CRL4_CDT2_1_c	I..FF	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv][st][den][fy][fy]	3	2.074	0.691	0.471	2.074	3.00	6.59	slimfinder#15120800001#48#I..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#48#I..FF	DEG_CRL4_CDT2_1_d	I..FF	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv][st][den][fy][fy]	3	2.074	0.691	0.471	2.074	3.00	5.82	slimfinder#15120800001#48#I..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#48#I..FF	DEG_CRL4_CDT2_2_a	I..FF	..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv]t[den][fhmy][fmy]	3	1.708	0.569	0.369	1.708	3.00	5.68	slimfinder#15120800001#48#I..FF	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 1/4
comparimotif	elm2015	slimfinder#15120800001#48#I..FF	DEG_CRL4_CDT2_2_b	I..FF	..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv]t[den][fhmy][fmy]	3	1.708	0.569	0.369	1.708	3.00	4.91	slimfinder#15120800001#48#I..FF	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 2/4
comparimotif	elm2015	slimfinder#15120800001#48#I..FF	DEG_CRL4_CDT2_2_c	I..FF	[NQ]..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv]t[den][fhmy][fmy]	3	1.708	0.569	0.369	1.708	3.00	6.45	slimfinder#15120800001#48#I..FF	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#48#I..FF	DEG_CRL4_CDT2_2_d	I..FF	[NQ]..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[ilmv]t[den][fhmy][fmy]	3	1.708	0.569	0.369	1.708	3.00	5.68	slimfinder#15120800001#48#I..FF	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#48#I..FF	LIG_PCNA_PIPBox_1_a	I..FF	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	[ilm][^p][acdegkmnqrst][fhm][fmy]	3	1.900	0.633	0.596	1.900	3.00	3.16	slimfinder#15120800001#48#I..FF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#48#I..FF	LIG_PCNA_PIPBox_1_b	I..FF	^.{0,3}.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	[ilm][^p][acdegkmnqrst][fhm][fmy]	3	1.900	0.633	0.596	1.900	3.00	3.16	slimfinder#15120800001#48#I..FF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 2/2
comparimotif	elm2015	slimfinder#15120800001#48#I..FF	TRG_Golgi_diPhe_1	I..FF	Q.{6,6}FF.{6,7}$	Variant Subsequence	Degenerate Parent	i..FF	2	2.000	0.667	0.667	1.333	3.00	4.00	slimfinder#15120800001#48#I..FF	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#49#KQ..L..FF	CLV_PCSK_SKI1_1	KQ..L..FF	[RK].[AILMFV][LTKF].	Complex Overlap	Complex Overlap	[kr].[afilmv][fklt]	2	0.939	0.550	0.339	1.100	5.00	1.71	slimfinder#15120800001#49#KQ..L..FF	Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#49#KQ..L..FF	DEG_CRL4_CDT2_1_c	KQ..L..FF	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Overlap	Complex Overlap	[nq]..[ilmv][st][den][fy][fy]	4	2.843	0.569	0.526	2.274	5.00	6.59	slimfinder#15120800001#49#KQ..L..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#49#KQ..L..FF	DEG_CRL4_CDT2_1_d	KQ..L..FF	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Overlap	Complex Overlap	[nq]..[ilmv][st][den][fy][fy]	4	2.843	0.569	0.526	2.274	5.00	5.82	slimfinder#15120800001#49#KQ..L..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#49#KQ..L..FF	DOC_CYCLIN_1	KQ..L..FF	[RK].L.{0,1}[FYLIVMP]	Complex Parent	Complex Subsequence	[kr]ql.[filmpvy]	2	1.119	0.528	0.280	1.056	5.00	2.12	slimfinder#15120800001#49#KQ..L..FF	Substrate recognition site that interacts with cyclin and thereby increases phosphorylation by cyclin/cdk complexes. Predicted proteins should have a CDK phosphorylation site. Also used by cyclin/cdk inhibitors. [24 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#49#KQ..L..FF	DOC_MAPK_1_a	KQ..L..FF	[KR].{0,2}[KR].{2,4}[ILVM].[ILVF]	Complex Parent	Complex Subsequence	[kr]q[kr].l[ilmv].[filv]	2	1.306	0.500	0.246	1.000	5.00	2.61	slimfinder#15120800001#49#KQ..L..FF	MAPK interacting molecules (e.g. MAPKKs, substrates, phosphatases) carry docking motif that help to regulate specific interaction in the MAPK cascade. The classic motif approximates (R/K)xxxx#x# where # is a hydrophobic residue. [16 ELM instances] variant 1/3
comparimotif	elm2015	slimfinder#15120800001#49#KQ..L..FF	LIG_PCNA_PIPBox_1_a	KQ..L..FF	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Overlap	Complex Overlap	Q.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	4	2.900	0.917	0.680	3.668	5.00	3.16	slimfinder#15120800001#49#KQ..L..FF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#49#KQ..L..FF	LIG_PCNA_PIPBox_1_b	KQ..L..FF	^.{0,3}.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	kq.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	3	1.900	0.601	0.361	1.803	5.00	3.16	slimfinder#15120800001#49#KQ..L..FF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 2/2
comparimotif	elm2015	slimfinder#15120800001#49#KQ..L..FF	TRG_Golgi_diPhe_1	KQ..L..FF	Q.{6,6}FF.{6,7}$	Variant Overlap	Degenerate Overlap	Q..l..fF	2	2.000	0.500	0.500	1.000	5.00	4.00	slimfinder#15120800001#49#KQ..L..FF	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#5#Q..L..FF	CLV_PCSK_SKI1_1	Q..L..FF	[RK].[AILMFV][LTKF].	Complex Overlap	Complex Overlap	[kr].[afilmv][fklt]	2	0.939	0.550	0.339	1.100	4.00	1.71	slimfinder#15120800001#5#Q..L..FF	Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#5#Q..L..FF	DEG_CRL4_CDT2_1_a	Q..L..FF	..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Overlap	Complex Overlap	..[ilmv][st][den][fy][fy]	3	2.074	0.519	0.471	1.556	4.00	5.82	slimfinder#15120800001#5#Q..L..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 1/4
comparimotif	elm2015	slimfinder#15120800001#5#Q..L..FF	DEG_CRL4_CDT2_1_b	Q..L..FF	..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Overlap	Complex Overlap	..[ilmv][st][den][fy][fy]	3	2.074	0.519	0.471	1.556	4.00	5.05	slimfinder#15120800001#5#Q..L..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 2/4
comparimotif	elm2015	slimfinder#15120800001#5#Q..L..FF	DEG_CRL4_CDT2_1_c	Q..L..FF	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq]..[ilmv][st][den][fy][fy]	4	2.843	0.711	0.526	2.843	4.00	6.59	slimfinder#15120800001#5#Q..L..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#5#Q..L..FF	DEG_CRL4_CDT2_1_d	Q..L..FF	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq]..[ilmv][st][den][fy][fy]	4	2.843	0.711	0.526	2.843	4.00	5.82	slimfinder#15120800001#5#Q..L..FF	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#5#Q..L..FF	DEG_CRL4_CDT2_2_c	Q..L..FF	[NQ]..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq]..[ilmv]t[den][fhmy][fmy]	4	2.476	0.619	0.440	2.476	4.00	6.45	slimfinder#15120800001#5#Q..L..FF	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#5#Q..L..FF	DEG_CRL4_CDT2_2_d	Q..L..FF	[NQ]..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq]..[ilmv]t[den][fhmy][fmy]	4	2.476	0.619	0.440	2.476	4.00	5.68	slimfinder#15120800001#5#Q..L..FF	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#5#Q..L..FF	LIG_PCNA_PIPBox_1_a	Q..L..FF	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	Q.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	4	2.900	0.917	0.680	3.668	4.00	3.16	slimfinder#15120800001#5#Q..L..FF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#5#Q..L..FF	LIG_PCNA_PIPBox_1_b	Q..L..FF	^.{0,3}.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	q.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	3	1.900	0.601	0.446	1.803	4.00	3.16	slimfinder#15120800001#5#Q..L..FF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 2/2
comparimotif	elm2015	slimfinder#15120800001#5#Q..L..FF	TRG_Golgi_diPhe_1	Q..L..FF	Q.{6,6}FF.{6,7}$	Variant Subsequence	Degenerate Parent	Q..l..fF	2	2.000	0.500	0.500	1.000	4.00	4.00	slimfinder#15120800001#5#Q..L..FF	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#5#Q..L..FF	TRG_PEX_3	Q..L..FF	L..LL...L..F	Variant Overlap	Degenerate Overlap	q..L..F	2	2.000	0.500	0.667	1.000	4.00	5.00	slimfinder#15120800001#5#Q..L..FF	LxxLLxxxLxxF motif is located in N-terminus of Pex19 receptors that are responsible for docking to Pex3 docking factor at cis side of peroxisomal membrane. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#50#Q..L..F	DEG_CRL4_CDT2_1_c	Q..L..F	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq]..[ilmv][st][den][fy]	3	2.074	0.691	0.471	2.074	3.00	6.59	slimfinder#15120800001#50#Q..L..F	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#50#Q..L..F	DEG_CRL4_CDT2_1_d	Q..L..F	[NQ]..[ILMV][ST][DEN][FY][FY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq]..[ilmv][st][den][fy]	3	2.074	0.691	0.471	2.074	3.00	5.82	slimfinder#15120800001#50#Q..L..F	This degron overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [6 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#50#Q..L..F	DEG_CRL4_CDT2_2_c	Q..L..F	[NQ]..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq]..[ilmv]t[den][fhmy]	3	1.843	0.614	0.398	1.843	3.00	6.45	slimfinder#15120800001#50#Q..L..F	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 3/4
comparimotif	elm2015	slimfinder#15120800001#50#Q..L..F	DEG_CRL4_CDT2_2_d	Q..L..F	[NQ]..[ILMV]T[DEN][HMFY][FMY].{2,3}[KR][KR][^DE]	Complex Subsequence	Complex Parent	[nq]..[ilmv]t[den][fhmy]	3	1.843	0.614	0.398	1.843	3.00	5.68	slimfinder#15120800001#50#Q..L..F	This degron, occurring in non-Vertebrates, overlaps a PCNA interaction protein (PIP) box and is recognised by the CRL4<sup>Cdt2</sup> ubiquitin ligase in a PCNA- and chromatin-dependent manner. [1 ELM instances] variant 4/4
comparimotif	elm2015	slimfinder#15120800001#50#Q..L..F	LIG_Clathr_ClatBox_1	Q..L..F	L[IVLMF].[IVLMF][DE]	Complex Overlap	Complex Overlap	L[filmv].[filmv]	2	1.463	0.543	0.594	1.086	3.00	2.69	slimfinder#15120800001#50#Q..L..F	Clathrin box motif found on cargo adaptor proteins, it interacts with the beta propeller structure located at the N-terminus of Clathrin heavy chain. [18 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#50#Q..L..F	LIG_PCNA_PIPBox_1_a	Q..L..F	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	Q.[^fhwy][ilm][^p][acdegkmnqrst][fhm]	3	2.267	0.756	0.695	2.267	3.00	3.16	slimfinder#15120800001#50#Q..L..F	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#50#Q..L..F	TRG_PEX_3	Q..L..F	L..LL...L..F	Variant Subsequence	Degenerate Parent	q..L..F	2	2.000	0.667	0.667	1.333	3.00	5.00	slimfinder#15120800001#50#Q..L..F	LxxLLxxxLxxF motif is located in N-terminus of Pex19 receptors that are responsible for docking to Pex3 docking factor at cis side of peroxisomal membrane. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#6#[ST][IL].SFF	CLV_PCSK_SKI1_1	[ST][IL].SFF	[RK].[AILMFV][LTKF].	Complex Overlap	Complex Overlap	[kr]s[afilmv][fklt]	2	0.939	0.550	0.249	1.100	4.54	1.71	slimfinder#15120800001#6#[ST][IL].SFF	Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#6#[ST][IL].SFF	DEG_SCF_COI1_1	[ST][IL].SFF	..[RK][RK].SL..F[FLM].[RK]R[HRK].[RK].	Complex Subsequence	Complex Parent	[st][il].sF[flm]	4	3.171	0.699	0.634	2.795	4.54	8.34	slimfinder#15120800001#6#[ST][IL].SFF	This degron motif is present in JAZ transcriptional repressor proteins and binds to the COI1 F-box protein of the SCF E3 ubiquitin ligase in a jasmonate-dependent manner. [9 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#6#[ST][IL].SFF	LIG_14-3-3_2	[ST][IL].SFF	R..[^P]([ST])[IVLM].	Variant Overlap	Degenerate Overlap	[ST][ilmv].	2	1.306	0.562	0.849	1.124	4.54	2.32	slimfinder#15120800001#6#[ST][IL].SFF	Longer mode 2 interacting phospho-motif for 14-3-3 proteins with key conservation RxxxS#p. [7 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#6#[ST][IL].SFF	LIG_LIR_Apic_2	[ST][IL].SFF	[EDST].{0,2}[WFY]..P	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.539	0.390	1.079	4.54	2.17	slimfinder#15120800001#6#[ST][IL].SFF	Apicomplexa-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#6#[ST][IL].SFF	LIG_LIR_Gen_1	[ST][IL].SFF	[EDST].{0,2}[WFY]..[ILV]	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.649	0.390	1.298	4.54	1.80	slimfinder#15120800001#6#[ST][IL].SFF	Canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [21 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#6#[ST][IL].SFF	LIG_LIR_Nem_3	[ST][IL].SFF	[EDST].{0,2}[WFY]..[ILVFY]	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.717	0.390	1.433	4.54	1.63	slimfinder#15120800001#6#[ST][IL].SFF	Nematode-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#6#[ST][IL].SFF	LIG_PCNA_PIPBox_1_a	[ST][IL].SFF	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	5	2.145	0.678	0.471	3.392	4.54	3.16	slimfinder#15120800001#6#[ST][IL].SFF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#6#[ST][IL].SFF	LIG_PCNA_PIPBox_1_b	[ST][IL].SFF	^.{0,3}.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	5	2.145	0.678	0.471	3.392	4.54	3.16	slimfinder#15120800001#6#[ST][IL].SFF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 2/2
comparimotif	elm2015	slimfinder#15120800001#6#[ST][IL].SFF	LIG_PDZ_Class_1	[ST][IL].SFF	...[ST].[ACVILF]$	Variant Subsequence	Degenerate Parent	[st][il].[st]f[acfilv]	2	1.171	0.539	0.258	1.079	4.54	2.17	slimfinder#15120800001#6#[ST][IL].SFF	The C-terminal class 1 PDZ-binding motif is classically represented by a pattern like (ST)X(VIL)* [48 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#6#[ST][IL].SFF	LIG_WD40_WDR5_VDV_2	[ST][IL].SFF	[EDSTY].{0,4}[VIPLA][TSDEKR][ILVA]	Variant Overlap	Degenerate Overlap	[dekrst][ailv]	2	0.939	0.504	0.611	1.007	4.54	1.86	slimfinder#15120800001#6#[ST][IL].SFF	Fungi-specific variant of the WDR5-binding motif that binds to a cleft between blades 5 and 6 of the WD40 repeat domain of WDR5, opposite of the Win motif-binding site, to mediate assembly of histone modification complexes. [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#6#[ST][IL].SFF	MOD_CK1_1	[ST][IL].SFF	S..([ST])...	Complex Subsequence	Complex Parent	[st][il].[st]ff	2	1.537	0.869	0.322	1.738	4.54	1.77	slimfinder#15120800001#6#[ST][IL].SFF	CK1 phosphorylation site [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#6#[ST][IL].SFF	MOD_NEK2_1	[ST][IL].SFF	[FLM][^P][^P]([ST])[^DEP][^DE]	Complex Overlap	Complex Overlap	[ST][^ped][^ed]	2	0.823	0.539	0.523	1.079	4.54	1.53	slimfinder#15120800001#6#[ST][IL].SFF	NEK2 phosphorylation motif with preferred Phe, Leu or Met in the -3 position to compensate for less favorable residues in the +1 and +2 position. [3 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#6#[ST][IL].SFF	MOD_NEK2_2	[ST][IL].SFF	[WYPCAG][^P][^P]([ST])[IFCVML][KRHYF]	Complex Overlap	Complex Overlap	[ST][cfilmv][fhkry]	2	1.171	0.566	0.585	1.131	4.54	2.07	slimfinder#15120800001#6#[ST][IL].SFF	NEK2 phosphorylation motif with specific set of residues in the +1 and +2 position to compensate for less favorable residues in the -3 position. [0 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#6#[ST][IL].SFF	MOD_PK_1	[ST][IL].SFF	[RK]..(S)[VI]..	Ugly Overlap	Ugly Overlap	[st][ilv].s	2	1.402	0.553	0.506	1.105	4.54	2.54	slimfinder#15120800001#6#[ST][IL].SFF	Phosphorylase kinase phosphorylation site [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#6#[ST][IL].SFF	MOD_PLK	[ST][IL].SFF	.[DE].([ST])[ILFWMVA]..	Variant Overlap	Degenerate Overlap	[ST][afilmvw].s	2	1.119	0.593	0.441	1.186	4.54	1.89	slimfinder#15120800001#6#[ST][IL].SFF	Site phosphorylated by the Polo-like kinase. [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#6#[ST][IL].SFF	TRG_Golgi_diPhe_1	[ST][IL].SFF	Q.{6,6}FF.{6,7}$	Variant Subsequence	Degenerate Parent	[st][il].sFF	2	2.000	0.500	0.441	1.000	4.54	4.00	slimfinder#15120800001#6#[ST][IL].SFF	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#7#TL.SFF	CLV_PCSK_SKI1_1	TL.SFF	[RK].[AILMFV][LTKF].	Complex Overlap	Complex Overlap	[kr]s[afilmv][fklt]	2	0.939	0.550	0.249	1.100	5.00	1.71	slimfinder#15120800001#7#TL.SFF	Subtilisin/kexin isozyme-1 (SKI1) cleavage site ([RK]-X-[hydrophobic]-[LTKF]-|-X). [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#7#TL.SFF	LIG_14-3-3_2	TL.SFF	R..[^P]([ST])[IVLM].	Variant Overlap	Degenerate Overlap	[st][ilmv].	2	1.306	0.562	0.653	1.124	5.00	2.32	slimfinder#15120800001#7#TL.SFF	Longer mode 2 interacting phospho-motif for 14-3-3 proteins with key conservation RxxxS#p. [7 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#7#TL.SFF	LIG_LIR_Apic_2	TL.SFF	[EDST].{0,2}[WFY]..P	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.539	0.390	1.079	5.00	2.17	slimfinder#15120800001#7#TL.SFF	Apicomplexa-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#7#TL.SFF	LIG_LIR_Gen_1	TL.SFF	[EDST].{0,2}[WFY]..[ILV]	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.649	0.390	1.298	5.00	1.80	slimfinder#15120800001#7#TL.SFF	Canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [21 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#7#TL.SFF	LIG_LIR_Nem_3	TL.SFF	[EDST].{0,2}[WFY]..[ILVFY]	Variant Overlap	Degenerate Overlap	[dest][fwy]f	2	1.171	0.717	0.390	1.433	5.00	1.63	slimfinder#15120800001#7#TL.SFF	Nematode-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#7#TL.SFF	LIG_PCNA_PIPBox_1_a	TL.SFF	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	5	2.145	0.678	0.428	3.392	5.00	3.16	slimfinder#15120800001#7#TL.SFF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#7#TL.SFF	LIG_PCNA_PIPBox_1_b	TL.SFF	^.{0,3}.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	5	2.145	0.678	0.428	3.392	5.00	3.16	slimfinder#15120800001#7#TL.SFF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 2/2
comparimotif	elm2015	slimfinder#15120800001#7#TL.SFF	LIG_PDZ_Class_1	TL.SFF	...[ST].[ACVILF]$	Variant Subsequence	Degenerate Parent	tl.[st]f[acfilv]	2	1.171	0.539	0.234	1.079	5.00	2.17	slimfinder#15120800001#7#TL.SFF	The C-terminal class 1 PDZ-binding motif is classically represented by a pattern like (ST)X(VIL)* [48 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#7#TL.SFF	LIG_WD40_WDR5_VDV_2	TL.SFF	[EDSTY].{0,4}[VIPLA][TSDEKR][ILVA]	Variant Overlap	Degenerate Overlap	[dekrst][ailv]	2	0.939	0.504	0.470	1.007	5.00	1.86	slimfinder#15120800001#7#TL.SFF	Fungi-specific variant of the WDR5-binding motif that binds to a cleft between blades 5 and 6 of the WD40 repeat domain of WDR5, opposite of the Win motif-binding site, to mediate assembly of histone modification complexes. [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#7#TL.SFF	MOD_NEK2_1	TL.SFF	[FLM][^P][^P]([ST])[^DEP][^DE]	Complex Overlap	Complex Overlap	[st][^ped][^ed]	2	0.823	0.539	0.404	1.079	5.00	1.53	slimfinder#15120800001#7#TL.SFF	NEK2 phosphorylation motif with preferred Phe, Leu or Met in the -3 position to compensate for less favorable residues in the +1 and +2 position. [3 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#7#TL.SFF	MOD_NEK2_2	TL.SFF	[WYPCAG][^P][^P]([ST])[IFCVML][KRHYF]	Complex Overlap	Complex Overlap	[st][cfilmv][fhkry]	2	1.171	0.566	0.475	1.131	5.00	2.07	slimfinder#15120800001#7#TL.SFF	NEK2 phosphorylation motif with specific set of residues in the +1 and +2 position to compensate for less favorable residues in the -3 position. [0 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#7#TL.SFF	MOD_PLK	TL.SFF	.[DE].([ST])[ILFWMVA]..	Variant Overlap	Degenerate Overlap	[st][afilmvw].s	2	1.119	0.593	0.373	1.186	5.00	1.89	slimfinder#15120800001#7#TL.SFF	Site phosphorylated by the Polo-like kinase. [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#7#TL.SFF	TRG_Golgi_diPhe_1	TL.SFF	Q.{6,6}FF.{6,7}$	Variant Subsequence	Degenerate Parent	tl.sFF	2	2.000	0.500	0.400	1.000	5.00	4.00	slimfinder#15120800001#7#TL.SFF	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#8#Q.[ST][IL].S.F	LIG_14-3-3_2	Q.[ST][IL].S.F	R..[^P]([ST])[IVLM].	Complex Overlap	Complex Overlap	q[^p][ST][ilmv].	2	1.306	0.562	0.511	1.124	4.54	2.32	slimfinder#15120800001#8#Q.[ST][IL].S.F	Longer mode 2 interacting phospho-motif for 14-3-3 proteins with key conservation RxxxS#p. [7 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#8#Q.[ST][IL].S.F	LIG_LIR_Apic_2	Q.[ST][IL].S.F	[EDST].{0,2}[WFY]..P	Variant Overlap	Degenerate Overlap	[dest].[fwy]	2	1.171	0.539	0.585	1.079	4.54	2.17	slimfinder#15120800001#8#Q.[ST][IL].S.F	Apicomplexa-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#8#Q.[ST][IL].S.F	LIG_LIR_Gen_1	Q.[ST][IL].S.F	[EDST].{0,2}[WFY]..[ILV]	Variant Overlap	Degenerate Overlap	[dest].[fwy]	2	1.171	0.649	0.585	1.298	4.54	1.80	slimfinder#15120800001#8#Q.[ST][IL].S.F	Canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [21 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#8#Q.[ST][IL].S.F	LIG_LIR_Nem_3	Q.[ST][IL].S.F	[EDST].{0,2}[WFY]..[ILVFY]	Variant Overlap	Degenerate Overlap	[dest].[fwy]	2	1.171	0.717	0.585	1.433	4.54	1.63	slimfinder#15120800001#8#Q.[ST][IL].S.F	Nematode-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#8#Q.[ST][IL].S.F	LIG_PCNA_PIPBox_1_a	Q.[ST][IL].S.F	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	Q.[^fhwy][ilm][^p][acdegkmnqrst][fhm][fmy]	5	2.512	0.794	0.484	3.972	4.54	3.16	slimfinder#15120800001#8#Q.[ST][IL].S.F	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#8#Q.[ST][IL].S.F	LIG_PDZ_Class_1	Q.[ST][IL].S.F	...[ST].[ACVILF]$	Variant Overlap	Degenerate Overlap	[st][il].[st].[acfilv]	2	1.171	0.539	0.331	1.079	4.54	2.17	slimfinder#15120800001#8#Q.[ST][IL].S.F	The C-terminal class 1 PDZ-binding motif is classically represented by a pattern like (ST)X(VIL)* [48 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#8#Q.[ST][IL].S.F	LIG_WD40_WDR5_VDV_2	Q.[ST][IL].S.F	[EDSTY].{0,4}[VIPLA][TSDEKR][ILVA]	Complex Overlap	Complex Overlap	q[ailpv][dekrst][ailv]	2	0.939	0.504	0.313	1.007	4.54	1.86	slimfinder#15120800001#8#Q.[ST][IL].S.F	Fungi-specific variant of the WDR5-binding motif that binds to a cleft between blades 5 and 6 of the WD40 repeat domain of WDR5, opposite of the Win motif-binding site, to mediate assembly of histone modification complexes. [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#8#Q.[ST][IL].S.F	MOD_CK1_1	Q.[ST][IL].S.F	S..([ST])...	Complex Overlap	Complex Overlap	[st][il].[st].f	2	1.537	0.869	0.408	1.738	4.54	1.77	slimfinder#15120800001#8#Q.[ST][IL].S.F	CK1 phosphorylation site [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#8#Q.[ST][IL].S.F	MOD_NEK2_1	Q.[ST][IL].S.F	[FLM][^P][^P]([ST])[^DEP][^DE]	Complex Overlap	Complex Overlap	[^p][^p][ST][^ped][^ed]	3	0.840	0.551	0.324	1.652	4.54	1.53	slimfinder#15120800001#8#Q.[ST][IL].S.F	NEK2 phosphorylation motif with preferred Phe, Leu or Met in the -3 position to compensate for less favorable residues in the +1 and +2 position. [3 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#8#Q.[ST][IL].S.F	MOD_NEK2_2	Q.[ST][IL].S.F	[WYPCAG][^P][^P]([ST])[IFCVML][KRHYF]	Complex Overlap	Complex Overlap	[^p][^p][ST][cfilmv][fhkry]	3	1.188	0.574	0.394	1.722	4.54	2.07	slimfinder#15120800001#8#Q.[ST][IL].S.F	NEK2 phosphorylation motif with specific set of residues in the +1 and +2 position to compensate for less favorable residues in the -3 position. [0 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#8#Q.[ST][IL].S.F	MOD_PK_1	Q.[ST][IL].S.F	[RK]..(S)[VI]..	Ugly Overlap	Ugly Overlap	q.[st][ilv].s	2	1.402	0.553	0.372	1.105	4.54	2.54	slimfinder#15120800001#8#Q.[ST][IL].S.F	Phosphorylase kinase phosphorylation site [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#8#Q.[ST][IL].S.F	TRG_Golgi_diPhe_1	Q.[ST][IL].S.F	Q.{6,6}FF.{6,7}$	Variant Subsequence	Degenerate Parent	Q.[st][il].s.F	2	2.000	0.500	0.441	1.000	4.54	4.00	slimfinder#15120800001#8#Q.[ST][IL].S.F	ER to Golgi anterograde transport signal found at the C-terminus of type I ER-CGN integral membrane cargo receptors (cytoplasmic in this topology), it binds to COPII. [11 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#9#Q.[ST][IL].SF	LIG_14-3-3_2	Q.[ST][IL].SF	R..[^P]([ST])[IVLM].	Complex Overlap	Complex Overlap	q[^p][ST][ilmv].	2	1.306	0.562	0.511	1.124	4.54	2.32	slimfinder#15120800001#9#Q.[ST][IL].SF	Longer mode 2 interacting phospho-motif for 14-3-3 proteins with key conservation RxxxS#p. [7 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#9#Q.[ST][IL].SF	LIG_LIR_Apic_2	Q.[ST][IL].SF	[EDST].{0,2}[WFY]..P	Variant Overlap	Degenerate Overlap	[dest][fwy]	2	1.171	0.539	0.585	1.079	4.54	2.17	slimfinder#15120800001#9#Q.[ST][IL].SF	Apicomplexa-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#9#Q.[ST][IL].SF	LIG_LIR_Gen_1	Q.[ST][IL].SF	[EDST].{0,2}[WFY]..[ILV]	Variant Overlap	Degenerate Overlap	[dest][fwy]	2	1.171	0.649	0.585	1.298	4.54	1.80	slimfinder#15120800001#9#Q.[ST][IL].SF	Canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [21 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#9#Q.[ST][IL].SF	LIG_LIR_Nem_3	Q.[ST][IL].SF	[EDST].{0,2}[WFY]..[ILVFY]	Variant Overlap	Degenerate Overlap	[dest][fwy]	2	1.171	0.717	0.585	1.433	4.54	1.63	slimfinder#15120800001#9#Q.[ST][IL].SF	Nematode-specific variant of the canonical LIR motif that binds to Atg8 protein family members to mediate processes involved in autophagy. [1 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#9#Q.[ST][IL].SF	LIG_PCNA_PIPBox_1_a	Q.[ST][IL].SF	Q.[^FHWY][ILM][^P][^FHILVWYP][HFM][FMY]..	Complex Subsequence	Complex Parent	Q.[^fhwy][ilm][^p][acdegkmnqrst][fhm]	5	2.512	0.794	0.551	3.972	4.54	3.16	slimfinder#15120800001#9#Q.[ST][IL].SF	The PCNA binding PIP box motif is found in proteins involved in DNA replication, repair and cell cycle control. [18 ELM instances] variant 1/2
comparimotif	elm2015	slimfinder#15120800001#9#Q.[ST][IL].SF	LIG_WD40_WDR5_VDV_2	Q.[ST][IL].SF	[EDSTY].{0,4}[VIPLA][TSDEKR][ILVA]	Complex Overlap	Complex Overlap	q[ailpv][dekrst][ailv]	2	0.939	0.504	0.313	1.007	4.54	1.86	slimfinder#15120800001#9#Q.[ST][IL].SF	Fungi-specific variant of the WDR5-binding motif that binds to a cleft between blades 5 and 6 of the WD40 repeat domain of WDR5, opposite of the Win motif-binding site, to mediate assembly of histone modification complexes. [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#9#Q.[ST][IL].SF	MOD_CK1_1	Q.[ST][IL].SF	S..([ST])...	Complex Overlap	Complex Overlap	[st][il].[st]f	2	1.537	0.869	0.408	1.738	4.54	1.77	slimfinder#15120800001#9#Q.[ST][IL].SF	CK1 phosphorylation site [2 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#9#Q.[ST][IL].SF	MOD_NEK2_1	Q.[ST][IL].SF	[FLM][^P][^P]([ST])[^DEP][^DE]	Complex Overlap	Complex Overlap	[^p][^p][ST][^ped][^ed]	3	0.840	0.551	0.324	1.652	4.54	1.53	slimfinder#15120800001#9#Q.[ST][IL].SF	NEK2 phosphorylation motif with preferred Phe, Leu or Met in the -3 position to compensate for less favorable residues in the +1 and +2 position. [3 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#9#Q.[ST][IL].SF	MOD_NEK2_2	Q.[ST][IL].SF	[WYPCAG][^P][^P]([ST])[IFCVML][KRHYF]	Complex Overlap	Complex Overlap	[^p][^p][ST][cfilmv][fhkry]	3	1.188	0.574	0.394	1.722	4.54	2.07	slimfinder#15120800001#9#Q.[ST][IL].SF	NEK2 phosphorylation motif with specific set of residues in the +1 and +2 position to compensate for less favorable residues in the -3 position. [0 ELM instances]
comparimotif	elm2015	slimfinder#15120800001#9#Q.[ST][IL].SF	MOD_PK_1	Q.[ST][IL].SF	[RK]..(S)[VI]..	Ugly Overlap	Ugly Overlap	q.[st][ilv].s	2	1.402	0.553	0.372	1.105	4.54	2.54	slimfinder#15120800001#9#Q.[ST][IL].SF	Phosphorylase kinase phosphorylation site [1 ELM instances]