#~~# #~+~~+~# #~~# #LOG 00:00:00 Activity Log for SLiMSuite V1.5.2: Wed Dec 9 00:57:04 2015 #DIR 00:00:00 Run from directory: /srv/slimsuite/logs/prod #ARG 00:00:00 Commandline arguments: run ip=129.94.133.155 slimfinder&uniprotid=jobid:15120900009:uniprot&dismask=T&consmask=T&runid=CtBP1and2&jobid=15120900011 #VIO 00:00:00 Verbosity: -1; Interactivity: -1. #PROG 00:00:00 SLiMFinder V5.2.3: Short Linear Motif Finder #CMD 00:00:00 Full SLiMFinder CmdList: proglog=F iucut=0.2 usegopher=T protscores=T megablam=F orthdb=qfo_ref.2015-04.Eukaryota.fas sourcedate=2015-04-15 walltime=0 maxgapx=3 rest=format uniprotid=slimfinder.uniprotid dismask=T consmask=T runid=CtBP1and2 jobid=15120900011 resfile=slimfinder.csv savespace=0 targz=F megaslim=seqin basefile=slimfinder #DB 00:00:00 /srv/slimsuite/data/orthdb/qfo_ref.2015-04/qfo_ref.2015-04.Eukaryota.fas already formatted. (Force = False). #DB 00:00:00 /srv/slimsuite/data/orthdb/qfo_ref.2015-04/qfo_ref.2015-04.Eukaryota.fas already formatted. (Force = False). #ALPH 00:00:00 Alphabet: A C D E F G H I K L M N P Q R S T V W Y #WARN 00:00:00 NOTE: cloudfix=F. Be wary of ambiguity over-predictions. #URL 00:00:11 Extracting 71 AccNum from http://www.uniprot.org/uniprot/: 71 read & extracted; 0 failed; 0 duplicates. #DAT 00:00:12 Extracting entries from slimfinder.dat: 71 read, 71 extracted. #SEQ 00:00:12 71 sequences loaded from /srv/slimsuite/scratch/prod/slimfinder/15120900011/slimfinder.dat (Format: uniprot). #FAS 00:00:12 71 Sequences output to /srv/slimsuite/scratch/prod/slimfinder/15120900011/slimfinder.fas. #UPC 00:00:12 No UPC file found. #FAS 00:00:12 71 Sequences output to /srv/slimsuite/scratch/prod/slimfinder/15120900011/slimfinder.slimdb. #DICT 00:00:12 Made "short" seqName dictionary: 71 seq; 71 keys. #DB 00:00:12 /share/apps/blast+/2.2.29/bin/makeblastdb -in "/srv/slimsuite/scratch/prod/slimfinder/15120900011/slimfinder.slimdb" -out "/srv/slimsuite/scratch/prod/slimfinder/15120900011/slimfinder.slimdb" -title "/srv/slimsuite/scratch/prod/slimfinder/15120900011/slimfinder.slimdb" -parse_seqids -dbtype prot #SYS 00:00:12 /share/apps/blast+/2.2.29/bin/blastp -query /srv/slimsuite/scratch/prod/slimfinder/15120900011/slimfinder.slimdb -db /srv/slimsuite/scratch/prod/slimfinder/15120900011/slimfinder.slimdb -out /srv/slimsuite/scratch/prod/slimfinder/15120900011/slimfinder.self.blast -seg yes -comp_based_stats F -soft_masking true -evalue 1.000000e-04 -num_descriptions 71 -num_alignments 71 #INDEX 00:00:14 Indexed "Search" on "Query": 71 unique; 0 missing entries #CLUST 00:00:14 45 clusters generated from 71 keys (maxdis=1.00) #DICT 00:00:14 Made "short" seqName dictionary: 71 seq; 71 keys. #MST 00:00:14 MST for 71 sequences = 64.289. #UP 00:00:14 slimfinder: 71 Seq; 39 UPC; 64.289 MST; blaste=1.00e-04, blastcf=F, blastf=T #MAT 00:00:14 slimfinder GABLAM Distance matrix out to /srv/slimsuite/scratch/prod/slimfinder/15120900011/slimfinder.dis.tdt (text format). #MIN 00:00:14 AmbOcc 0.05 & 39 UP => AmbOcc 2 UPC. #MIN 00:00:14 MinOcc 0.05 & 39 UP => MinOcc 3 UPC. #DIS 00:00:14 Disorder score file: /srv/slimsuite/scratch/prod/slimfinder/15120900011/slimfinder.iupred.txt #MASK 00:00:14 AAPK1_HUMAN__Q13131 masked 24 ordered regions. (283 X added.) #MASK 00:00:14 ACTG_HUMAN__P63261 masked 18 ordered regions. (192 X added.) #MASK 00:00:14 AKTIP_HUMAN__Q9H8T0 masked 4 ordered regions. (153 X added.) #MASK 00:00:14 AP2A_HUMAN__P05549 masked 8 ordered regions. (96 X added.) #MASK 00:00:14 BAZ2B_HUMAN__Q9UIF8 masked 40 ordered regions. (469 X added.) #MASK 00:00:14 BCAS3_HUMAN__Q9H6U6 masked 28 ordered regions. (308 X added.) #MASK 00:00:14 BCL3_HUMAN__P20749 masked 21 ordered regions. (133 X added.) #MASK 00:00:14 C8AP2_HUMAN__Q9UKL3 masked 41 ordered regions. (252 X added.) #MASK 00:00:14 CCNH_HUMAN__P51946 masked 8 ordered regions. (195 X added.) #MASK 00:00:14 CCR5_HUMAN__P51681 masked 2 ordered regions. (322 X added.) #MASK 00:00:14 CEP68_HUMAN__Q76N32 masked 13 ordered regions. (105 X added.) #MASK 00:00:14 CHD3_HUMAN__Q12873 masked 58 ordered regions. (747 X added.) #MASK 00:00:14 CO039_HUMAN__Q6ZRI6 masked 13 ordered regions. (118 X added.) #MASK 00:00:14 COM1_HUMAN__Q99708 masked 14 ordered regions. (46 X added.) #MASK 00:00:14 CRY2_HUMAN__Q49AN0 masked 23 ordered regions. (297 X added.) #MASK 00:00:14 CTBP1_HUMAN__Q13363 masked 13 ordered regions. (221 X added.) #MASK 00:00:14 CTBP2_HUMAN__P56545 masked 16 ordered regions. (239 X added.) #MASK 00:00:14 CTNA1_HUMAN__P35221 masked 33 ordered regions. (329 X added.) #MASK 00:00:14 DMRTB_HUMAN__Q96MA1 masked 1 ordered regions. (43 X added.) #MASK 00:00:14 DVL2_HUMAN__O14641 masked 17 ordered regions. (158 X added.) #MASK 00:00:14 DYR1B_HUMAN__Q9Y463 masked 13 ordered regions. (232 X added.) #MASK 00:00:14 FLI1_HUMAN__Q01543 masked 8 ordered regions. (92 X added.) #MASK 00:00:14 FOG1_HUMAN__Q8IX07 masked 15 ordered regions. (245 X added.) #MASK 00:00:14 FOXP2_HUMAN__O15409 masked 14 ordered regions. (234 X added.) #MASK 00:00:14 FUND1_HUMAN__Q8IVP5 masked 6 ordered regions. (96 X added.) #MASK 00:00:14 HDAC1_HUMAN__Q13547 masked 18 ordered regions. (236 X added.) #MASK 00:00:14 HIC1_HUMAN__Q14526 masked 22 ordered regions. (221 X added.) #MASK 00:00:14 HXB5_HUMAN__P09067 masked 1 ordered regions. (35 X added.) #MASK 00:00:14 IKZF2_HUMAN__Q9UKS7 masked 13 ordered regions. (129 X added.) #MASK 00:00:14 IKZF1_HUMAN__Q13422 masked 8 ordered regions. (110 X added.) #MASK 00:00:14 KLF12_HUMAN__Q9Y4X4 masked 8 ordered regions. (44 X added.) #MASK 00:00:14 KLF4_HUMAN__O43474 masked 6 ordered regions. (36 X added.) #MASK 00:00:14 LCORL_HUMAN__Q8N3X6 masked 22 ordered regions. (117 X added.) #MASK 00:00:14 LCOR_HUMAN__Q96JN0 masked 7 ordered regions. (17 X added.) #MASK 00:00:14 MDM2_HUMAN__Q00987 masked 9 ordered regions. (154 X added.) #MASK 00:00:14 MK09_HUMAN__P45984 masked 12 ordered regions. (233 X added.) #MASK 00:00:14 MYC_HUMAN__P01106 masked 8 ordered regions. (66 X added.) #MASK 00:00:14 NDKB_HUMAN__P22392 masked 4 ordered regions. (90 X added.) #MASK 00:00:14 NOL4L_HUMAN__Q96MY1 masked 2 ordered regions. (27 X added.) #MASK 00:00:14 NOL4_HUMAN__O94818 masked 11 ordered regions. (71 X added.) #MASK 00:00:14 NRIP1_HUMAN__P48552 masked 10 ordered regions. (26 X added.) #MASK 00:00:14 ORC4_HUMAN__O43929 masked 17 ordered regions. (312 X added.) #MASK 00:00:14 PLCB1_HUMAN__Q9NQ66 masked 47 ordered regions. (436 X added.) #MASK 00:00:14 PR15A_HUMAN__O75807 masked 3 ordered regions. (39 X added.) #MASK 00:00:14 PROX1_HUMAN__Q92786 masked 12 ordered regions. (149 X added.) #MASK 00:00:14 PYRG2_HUMAN__Q9NRF8 masked 28 ordered regions. (336 X added.) #MASK 00:00:14 RAI2_HUMAN__Q9Y5P3 masked 10 ordered regions. (68 X added.) #MASK 00:00:14 RBBP5_HUMAN__Q15291 masked 14 ordered regions. (234 X added.) #MASK 00:00:14 RIM3A_HUMAN__Q9UFD9 masked 46 ordered regions. (353 X added.) #MASK 00:00:14 RL17_HUMAN__P18621 masked 11 ordered regions. (26 X added.) #MASK 00:00:14 RL7A_HUMAN__P62424 masked 6 ordered regions. (92 X added.) #MASK 00:00:14 RS29_HUMAN__P62273 masked 2 ordered regions. (36 X added.) #MASK 00:00:14 RS4X_HUMAN__P62701 masked 9 ordered regions. (158 X added.) #MASK 00:00:14 SOBP_HUMAN__A7XYQ1 masked 7 ordered regions. (143 X added.) #MASK 00:00:14 SOX13_HUMAN__Q9UN79 masked 8 ordered regions. (30 X added.) #MASK 00:00:14 STX11_HUMAN__O75558 masked 11 ordered regions. (110 X added.) #MASK 00:00:14 TEAD3_HUMAN__Q99594 masked 16 ordered regions. (160 X added.) #MASK 00:00:14 TGIF1_HUMAN__Q15583 masked 10 ordered regions. (57 X added.) #MASK 00:00:14 THA11_HUMAN__Q96EK4 masked 14 ordered regions. (65 X added.) #MASK 00:00:14 TSH3_HUMAN__Q63HK5 masked 16 ordered regions. (113 X added.) #MASK 00:00:14 UBC9_HUMAN__P63279 masked 8 ordered regions. (46 X added.) #MASK 00:00:14 VDR_HUMAN__P11473 masked 14 ordered regions. (215 X added.) #MASK 00:00:14 XRCC6_HUMAN__P12956 masked 27 ordered regions. (260 X added.) #MASK 00:00:14 Z512B_HUMAN__Q96KM6 masked 15 ordered regions. (181 X added.) #MASK 00:00:14 ZBT18_HUMAN__Q99592 masked 9 ordered regions. (219 X added.) #MASK 00:00:14 ZEB1_HUMAN__P37275 masked 25 ordered regions. (184 X added.) #MASK 00:00:14 ZN219_HUMAN__Q9P2Y4 masked 15 ordered regions. (96 X added.) #MASK 00:00:14 ZN366_HUMAN__Q8N895 masked 23 ordered regions. (211 X added.) #MASK 00:00:14 ZN750_HUMAN__Q32MQ0 masked 11 ordered regions. (59 X added.) #DB 00:00:14 /srv/slimsuite/data/orthdb/qfo_ref.2015-04/qfo_ref.2015-04.Eukaryota.fas already formatted. (Force = False). #MASK 00:00:14 Masked AAPK1_HUMAN__Q13131 low relative conservation. (156 X added to 559aa seq.) #MASK 00:00:14 Masked ACTG_HUMAN__P63261 low relative conservation. (64 X added to 375aa seq.) #MASK 00:00:14 Masked AKTIP_HUMAN__Q9H8T0 low relative conservation. (67 X added to 292aa seq.) #MASK 00:00:14 Masked AP2A_HUMAN__P05549 low relative conservation. (153 X added to 437aa seq.) #MASK 00:00:14 Masked BAZ2B_HUMAN__Q9UIF8 low relative conservation. (811 X added to 2168aa seq.) #MASK 00:00:14 Masked BCAS3_HUMAN__Q9H6U6 low relative conservation. (326 X added to 928aa seq.) #MASK 00:00:14 Masked BCL3_HUMAN__P20749 low relative conservation. (128 X added to 454aa seq.) #MASK 00:00:14 Masked C8AP2_HUMAN__Q9UKL3 low relative conservation. (868 X added to 1982aa seq.) #MASK 00:00:14 Masked CCNH_HUMAN__P51946 low relative conservation. (78 X added to 323aa seq.) #MASK 00:00:14 Masked CCR5_HUMAN__P51681 low relative conservation. (12 X added to 352aa seq.) #MASK 00:00:14 Masked CEP68_HUMAN__Q76N32 low relative conservation. (297 X added to 757aa seq.) #MASK 00:00:14 Masked CHD3_HUMAN__Q12873 low relative conservation. (635 X added to 2000aa seq.) #MASK 00:00:14 Masked CO039_HUMAN__Q6ZRI6 low relative conservation. (424 X added to 1047aa seq.) #MASK 00:00:14 Masked COM1_HUMAN__Q99708 low relative conservation. (377 X added to 897aa seq.) #MASK 00:00:14 Masked CRY2_HUMAN__Q49AN0 low relative conservation. (167 X added to 593aa seq.) #MASK 00:00:14 Masked CTBP1_HUMAN__Q13363 low relative conservation. (107 X added to 440aa seq.) #MASK 00:00:14 Masked CTBP2_HUMAN__P56545 low relative conservation. (110 X added to 445aa seq.) #MASK 00:00:14 Masked CTNA1_HUMAN__P35221 low relative conservation. (276 X added to 906aa seq.) #MASK 00:00:14 Masked DMRTB_HUMAN__Q96MA1 low relative conservation. (164 X added to 342aa seq.) #MASK 00:00:14 Masked DVL2_HUMAN__O14641 low relative conservation. (270 X added to 736aa seq.) #MASK 00:00:14 Masked DYR1B_HUMAN__Q9Y463 low relative conservation. (216 X added to 629aa seq.) #MASK 00:00:14 Masked FLI1_HUMAN__Q01543 low relative conservation. (161 X added to 452aa seq.) #MASK 00:00:14 Masked FOG1_HUMAN__Q8IX07 low relative conservation. (381 X added to 1006aa seq.) #MASK 00:00:14 Masked FOXP2_HUMAN__O15409 low relative conservation. (190 X added to 715aa seq.) #MASK 00:00:14 Masked FUND1_HUMAN__Q8IVP5 low relative conservation. (26 X added to 155aa seq.) #MASK 00:00:14 Masked HDAC1_HUMAN__Q13547 low relative conservation. (125 X added to 482aa seq.) #MASK 00:00:14 Masked HEMGN_HUMAN__Q9BXL5 low relative conservation. (252 X added to 484aa seq.) #MASK 00:00:14 Masked HIC1_HUMAN__Q14526 low relative conservation. (238 X added to 733aa seq.) #MASK 00:00:14 Masked HXB5_HUMAN__P09067 low relative conservation. (109 X added to 269aa seq.) #MASK 00:00:14 Masked IKZF2_HUMAN__Q9UKS7 low relative conservation. (213 X added to 526aa seq.) #MASK 00:00:14 Masked IKZF1_HUMAN__Q13422 low relative conservation. (177 X added to 519aa seq.) #MASK 00:00:14 Masked KLF12_HUMAN__Q9Y4X4 low relative conservation. (165 X added to 402aa seq.) #MASK 00:00:14 Masked KLF4_HUMAN__O43474 low relative conservation. (217 X added to 513aa seq.) #MASK 00:00:14 Masked LCORL_HUMAN__Q8N3X6 low relative conservation. (248 X added to 602aa seq.) #MASK 00:00:14 Masked LCOR_HUMAN__Q96JN0 low relative conservation. (144 X added to 433aa seq.) #MASK 00:00:14 Masked MDM2_HUMAN__Q00987 low relative conservation. (167 X added to 491aa seq.) #MASK 00:00:14 Masked MK09_HUMAN__P45984 low relative conservation. (102 X added to 424aa seq.) #MASK 00:00:14 Masked MYC_HUMAN__P01106 low relative conservation. (188 X added to 439aa seq.) #MASK 00:00:15 Masked NDKB_HUMAN__P22392 low relative conservation. (30 X added to 152aa seq.) #MASK 00:00:15 Masked NOL4L_HUMAN__Q96MY1 low relative conservation. (167 X added to 436aa seq.) #MASK 00:00:15 Masked NOL4_HUMAN__O94818 low relative conservation. (285 X added to 638aa seq.) #MASK 00:00:15 Masked NRIP1_HUMAN__P48552 low relative conservation. (544 X added to 1158aa seq.) #MASK 00:00:15 Masked ORC4_HUMAN__O43929 low relative conservation. (68 X added to 436aa seq.) #MASK 00:00:15 Masked PLCB1_HUMAN__Q9NQ66 low relative conservation. (383 X added to 1216aa seq.) #MASK 00:00:15 Masked PR15A_HUMAN__O75807 low relative conservation. (331 X added to 674aa seq.) #MASK 00:00:15 Masked PROX1_HUMAN__Q92786 low relative conservation. (239 X added to 737aa seq.) #MASK 00:00:15 Masked PYRG2_HUMAN__Q9NRF8 low relative conservation. (122 X added to 586aa seq.) #MASK 00:00:15 Masked RAI2_HUMAN__Q9Y5P3 low relative conservation. (221 X added to 530aa seq.) #MASK 00:00:15 Masked RBBP5_HUMAN__Q15291 low relative conservation. (163 X added to 538aa seq.) #MASK 00:00:15 Masked RIM3A_HUMAN__Q9UFD9 low relative conservation. (632 X added to 1639aa seq.) #MASK 00:00:15 Masked RL17_HUMAN__P18621 low relative conservation. (79 X added to 184aa seq.) #MASK 00:00:15 Masked RL7A_HUMAN__P62424 low relative conservation. (89 X added to 266aa seq.) #MASK 00:00:15 Masked RS28_HUMAN__P62857 low relative conservation. (29 X added to 69aa seq.) #MASK 00:00:15 Masked RS29_HUMAN__P62273 low relative conservation. (10 X added to 56aa seq.) #MASK 00:00:15 Masked RS4X_HUMAN__P62701 low relative conservation. (45 X added to 263aa seq.) #MASK 00:00:15 Masked SOBP_HUMAN__A7XYQ1 low relative conservation. (367 X added to 873aa seq.) #MASK 00:00:15 Masked SOX13_HUMAN__Q9UN79 low relative conservation. (234 X added to 622aa seq.) #MASK 00:00:15 Masked STX11_HUMAN__O75558 low relative conservation. (96 X added to 287aa seq.) #MASK 00:00:15 Masked TEAD3_HUMAN__Q99594 low relative conservation. (127 X added to 435aa seq.) #MASK 00:00:15 Masked TGIF1_HUMAN__Q15583 low relative conservation. (159 X added to 401aa seq.) #MASK 00:00:15 Masked THA11_HUMAN__Q96EK4 low relative conservation. (115 X added to 314aa seq.) #MASK 00:00:15 Masked TSH3_HUMAN__Q63HK5 low relative conservation. (336 X added to 1081aa seq.) #MASK 00:00:15 Masked UBC9_HUMAN__P63279 low relative conservation. (56 X added to 158aa seq.) #MASK 00:00:15 Masked VDR_HUMAN__P11473 low relative conservation. (94 X added to 427aa seq.) #MASK 00:00:15 Masked XRCC6_HUMAN__P12956 low relative conservation. (192 X added to 609aa seq.) #MASK 00:00:15 Masked Z512B_HUMAN__Q96KM6 low relative conservation. (321 X added to 892aa seq.) #MASK 00:00:15 Masked ZBT18_HUMAN__Q99592 low relative conservation. (129 X added to 522aa seq.) #MASK 00:00:15 Masked ZEB1_HUMAN__P37275 low relative conservation. (428 X added to 1124aa seq.) #MASK 00:00:15 Masked ZN219_HUMAN__Q9P2Y4 low relative conservation. (251 X added to 722aa seq.) #MASK 00:00:15 Masked ZN366_HUMAN__Q8N895 low relative conservation. (236 X added to 744aa seq.) #MASK 00:00:15 Masked ZN750_HUMAN__Q32MQ0 low relative conservation. (333 X added to 723aa seq.) #REL 00:00:15 15,720 aa masked using relative conservation #FTMASK 00:00:15 FTMask: None #MASK 00:00:15 Masked AP2A_HUMAN__P05549 "low complexity" regions. (3 X added.) #MASK 00:00:15 Masked BAZ2B_HUMAN__Q9UIF8 "low complexity" regions. (16 X added.) #MASK 00:00:15 Masked C8AP2_HUMAN__Q9UKL3 "low complexity" regions. (3 X added.) #MASK 00:00:15 Masked CEP68_HUMAN__Q76N32 "low complexity" regions. (3 X added.) #MASK 00:00:15 Masked CO039_HUMAN__Q6ZRI6 "low complexity" regions. (3 X added.) #MASK 00:00:15 Masked DMRTB_HUMAN__Q96MA1 "low complexity" regions. (3 X added.) #MASK 00:00:15 Masked DVL2_HUMAN__O14641 "low complexity" regions. (3 X added.) #MASK 00:00:15 Masked DYR1B_HUMAN__Q9Y463 "low complexity" regions. (6 X added.) #MASK 00:00:15 Masked FOG1_HUMAN__Q8IX07 "low complexity" regions. (3 X added.) #MASK 00:00:15 Masked FOXP2_HUMAN__O15409 "low complexity" regions. (3 X added.) #MASK 00:00:15 Masked HIC1_HUMAN__Q14526 "low complexity" regions. (3 X added.) #MASK 00:00:15 Masked KLF12_HUMAN__Q9Y4X4 "low complexity" regions. (8 X added.) #MASK 00:00:15 Masked MYC_HUMAN__P01106 "low complexity" regions. (4 X added.) #MASK 00:00:15 Masked NRIP1_HUMAN__P48552 "low complexity" regions. (6 X added.) #MASK 00:00:15 Masked PLCB1_HUMAN__Q9NQ66 "low complexity" regions. (3 X added.) #MASK 00:00:15 Masked PR15A_HUMAN__O75807 "low complexity" regions. (3 X added.) #MASK 00:00:15 Masked PROX1_HUMAN__Q92786 "low complexity" regions. (8 X added.) #MASK 00:00:15 Masked RIM3A_HUMAN__Q9UFD9 "low complexity" regions. (11 X added.) #MASK 00:00:15 Masked TGIF1_HUMAN__Q15583 "low complexity" regions. (9 X added.) #MASK 00:00:15 Masked THA11_HUMAN__Q96EK4 "low complexity" regions. (8 X added.) #MASK 00:00:15 Masked TSH3_HUMAN__Q63HK5 "low complexity" regions. (7 X added.) #MASK 00:00:15 Masked ZEB1_HUMAN__P37275 "low complexity" regions. (10 X added.) #MASK 00:00:15 Masked ZN219_HUMAN__Q9P2Y4 "low complexity" regions. (6 X added.) #MASK 00:00:15 MetMask: 36 N-terminal Ms masked #MASK 00:00:15 Masked C8AP2_HUMAN__Q9UKL3 position-specific AAs. (1 X added.) #MASK 00:00:15 Masked CEP68_HUMAN__Q76N32 position-specific AAs. (1 X added.) #MASK 00:00:15 Masked CTBP2_HUMAN__P56545 position-specific AAs. (1 X added.) #MASK 00:00:15 Masked PLCB1_HUMAN__Q9NQ66 position-specific AAs. (1 X added.) #MASK 00:00:15 Masked PR15A_HUMAN__O75807 position-specific AAs. (1 X added.) #MASK 00:00:15 Masked SOBP_HUMAN__A7XYQ1 position-specific AAs. (1 X added.) #MASK 00:00:15 Masked TEAD3_HUMAN__Q99594 position-specific AAs. (1 X added.) #MASK 00:00:15 slimfinder: Masking of input sequences complete. #SPACE 00:00:15 Motif Space, 2 positions: 1,200 motifs #SPACE 00:00:15 Motif Space, 3 positions: 72,000 motifs #SPACE 00:00:15 Motif Space, 4 positions: 4,320,000 motifs #SPACE 00:00:15 Motif Space, 5 positions: 259,200,000 motifs #DIM 00:00:15 Read dimers from 71 seq: 1,256 dimers #DIM 00:00:15 Reducing dimers: 1,183 >= 2 of 39 UPC #SLIM 00:00:15 Selecting 2aa SLiMs: 1,183 >= 2 of 39 UPC #AMB 00:00:15 Adding Wildcard ambiguity: 100.0% (0 amb motifs) #AMB 00:00:15 Adding Degeneracy ambiguity: 100.0% (0 amb motifs) #SLIM 00:00:49 Extending 3aa SLiMs >= 2 of 39 UPC: 10,390 SLiMs #AMB 00:00:52 Adding Wildcard ambiguity: 100.0% (3,084 amb motifs) #AMB 00:01:01 Adding Degeneracy ambiguity: 100.0% (4,523 amb motifs) #SLIM 00:01:54 Extending 4aa SLiMs >= 2 of 39 UPC: 3,396 SLiMs #AMB 00:01:55 Adding Wildcard ambiguity: 100.0% (476 amb motifs) #AMB 00:01:57 Adding Degeneracy ambiguity: 100.0% (275 amb motifs) #SLIM 00:02:12 Extending 5aa SLiMs >= 2 of 39 UPC: 506 SLiMs #AMB 00:02:12 Adding Wildcard ambiguity: 100.0% (5 amb motifs) #AMB 00:02:13 Adding Degeneracy ambiguity: 100.0% (5 amb motifs) #SLIM 00:02:13 23,843 SLiMs >= 2 of 39 UPC #SAVE 00:02:15 SLiMFinder Intermediate saved as /srv/slimsuite/scratch/prod/slimfinder/15120900011/slimfinder.l5w2o2a3.FreqConsDisComp-5-8.pickle (Python pickle). #GZIP 00:02:16 /srv/slimsuite/scratch/prod/slimfinder/15120900011/slimfinder.l5w2o2a3.FreqConsDisComp-5-8.pickle zipped. #SLIM 00:02:16 Filtering 23,843 SLiMs: 10,959 retained. #PROB 00:02:26 Calculating [Sig] SLiM Probabilities (Sig<=0.10) complete: 3 ranked SLiMs. #COMB 00:02:26 Combined Occurrence Attributes complete. #CLOUD 00:02:26 Making "Motif Clouds" for 3 Sig Motifs: 1 Clouds #SLIM 00:02:26 Cloud 1 (D.P[IL]DL|D.P.DL[ST]|D..[IL]DL[ST]) SLiMMaker: D.[PV][IL]DL[ST] #FREQ 00:02:26 SLiMMaker SLiM matches 8 of 9 sequences (88.9%). #RANK 00:02:26 Rank calculations complete #CLOUD 00:02:26 Motif cloud data output to /srv/slimsuite/scratch/prod/slimfinder/15120900011/slimfinder.l5w2o2a3.CtBP1and2.cloud.txt for 1 clouds. #FAS 00:02:26 71 Sequences output to /srv/slimsuite/scratch/prod/slimfinder/15120900011/slimfinder.l5w2o2a3.CtBP1and2.masked.fas. #FAS 00:02:29 213 Sequences output to /srv/slimsuite/scratch/prod/slimfinder/15120900011/slimfinder.l5w2o2a3.CtBP1and2.mapping.fas. #ALN 00:02:29 Constructing motif alignments: 3 motifs & 8 seqs.: 100.0%. #FAS 00:02:29 9 Sequences output to /srv/slimsuite/scratch/prod/slimfinder/15120900011/slimfinder.l5w2o2a3.CtBP1and2.motifaln.fas. #ALN 00:02:29 Constructing motif alignments: 3 motifs & 8 seqs.: 100.0%. #FAS 00:02:29 9 Sequences output to /srv/slimsuite/scratch/prod/slimfinder/15120900011/slimfinder.l5w2o2a3.CtBP1and2.maskaln.fas. #OCC 00:02:29 Occurrence data output for 17 motif occurrences. #RES 00:02:29 SLiMFinder results output to /srv/slimsuite/scratch/prod/slimfinder/15120900011/slimfinder.csv and /srv/slimsuite/scratch/prod/slimfinder/15120900011/slimfinder.occ.csv. #RES 00:02:29 Additional dataset results output to /srv/slimsuite/scratch/prod/slimfinder/15120900011/slimfinder.* #END 00:02:29 SLiMFinder server run ended (Finished!): see log file for details. #WARN 00:02:29 1 warning messages: check log for details. #LOG 00:02:29 SLiMFinder V5.2.3 End: Wed Dec 9 00:59:33 2015 #JOBID 00:02:29 15120900011 #REST 00:02:29 URL for future retrieval: http://rest.slimsuite.unsw.edu.au/retrieve&jobid=15120900011&rest=format&password=None