#~~# #~+~~+~# #~~# #LOG 00:00:00 Activity Log for SLiMSuite V1.5.2: Wed Dec 9 01:17:21 2015 #DIR 00:00:00 Run from directory: /srv/slimsuite/logs/prod #ARG 00:00:00 Commandline arguments: run ip=129.94.133.155 slimprob&uniprotid=CTBP1&dismask=T&runid=CtBP1-DisMask&motifs=PxDLS,P[LVIPME][DENS][LM][VASTRG],Px[DE][LM][ST]&jobid=15120900016 #VIO 00:00:00 Verbosity: -1; Interactivity: -1. #PROG 00:00:00 SLiMProb V2.2.5: Short Linear Motif Probability tool #CMD 00:00:00 Full SLiMProb CmdList: proglog=F iucut=0.2 usegopher=T protscores=T megablam=F orthdb=qfo_ref.2015-04.Eukaryota.fas sourcedate=2015-04-15 walltime=0 maxgapx=3 rest=format uniprotid=CTBP1.hint.acc dismask=T runid=CtBP1-DisMask motifs=PxDLS,P[LVIPME][DENS][LM][VASTRG],Px[DE][LM][ST] jobid=15120900016 resfile=slimprob.csv savespace=0 targz=F megaslim=seqin basefile=slimprob #DB 00:00:00 /srv/slimsuite/data/orthdb/qfo_ref.2015-04/qfo_ref.2015-04.Eukaryota.fas already formatted. (Force = False). #DB 00:00:00 /srv/slimsuite/data/orthdb/qfo_ref.2015-04/qfo_ref.2015-04.Eukaryota.fas already formatted. (Force = False). #MOT 00:00:00 3 motifs read from PxDLS,P[LVIPME][DENS][LM][VASTRG],Px[DE][LM][ST] (3 lines): 3 retained. #ALPH 00:00:00 Alphabet: A C D E F G H I K L M N P Q R S T V W Y #URL 00:00:03 Extracting 20 AccNum from http://www.uniprot.org/uniprot/: 20 read & extracted; 0 failed; 0 duplicates. #DAT 00:00:03 Extracting entries from slimprob.dat: 20 read, 20 extracted. #SEQ 00:00:03 20 sequences loaded from /srv/slimsuite/scratch/prod/slimprob/15120900016/slimprob.dat (Format: uniprot). #FAS 00:00:03 20 Sequences output to /srv/slimsuite/scratch/prod/slimprob/15120900016/slimprob.fas. #UPC 00:00:03 No UPC file found. #FAS 00:00:03 20 Sequences output to /srv/slimsuite/scratch/prod/slimprob/15120900016/slimprob.slimdb. #DICT 00:00:03 Made "short" seqName dictionary: 20 seq; 20 keys. #DB 00:00:03 /share/apps/blast+/2.2.29/bin/makeblastdb -in "/srv/slimsuite/scratch/prod/slimprob/15120900016/slimprob.slimdb" -out "/srv/slimsuite/scratch/prod/slimprob/15120900016/slimprob.slimdb" -title "/srv/slimsuite/scratch/prod/slimprob/15120900016/slimprob.slimdb" -parse_seqids -dbtype prot #SYS 00:00:03 /share/apps/blast+/2.2.29/bin/blastp -query /srv/slimsuite/scratch/prod/slimprob/15120900016/slimprob.slimdb -db /srv/slimsuite/scratch/prod/slimprob/15120900016/slimprob.slimdb -out /srv/slimsuite/scratch/prod/slimprob/15120900016/slimprob.self.blast -seg yes -comp_based_stats F -soft_masking true -evalue 1.000000e-04 -num_descriptions 20 -num_alignments 20 #INDEX 00:00:04 Indexed "Search" on "Query": 20 unique; 0 missing entries #CLUST 00:00:04 16 clusters generated from 20 keys (maxdis=1.00) #DICT 00:00:04 Made "short" seqName dictionary: 20 seq; 20 keys. #MST 00:00:04 MST for 20 sequences = 19.049. #UP 00:00:04 slimprob: 20 Seq; 16 UPC; 19.049 MST; blaste=1.00e-04, blastcf=F, blastf=T #MAT 00:00:04 slimprob GABLAM Distance matrix out to /srv/slimsuite/scratch/prod/slimprob/15120900016/slimprob.dis.tdt (text format). #DIS 00:00:04 Disorder score file: /srv/slimsuite/scratch/prod/slimprob/15120900016/slimprob.iupred.txt #MASK 00:00:04 ATX1L_HUMAN__P0C7T5 masked 21 ordered regions. (107 X added.) #MASK 00:00:04 BRCA1_HUMAN__P38398 masked 20 ordered regions. (268 X added.) #MASK 00:00:04 CBX4_HUMAN__O00257 masked 3 ordered regions. (54 X added.) #MASK 00:00:04 CHD3_HUMAN__Q12873 masked 58 ordered regions. (747 X added.) #MASK 00:00:04 COM1_HUMAN__Q99708 masked 14 ordered regions. (46 X added.) #MASK 00:00:04 CTBP1_HUMAN__Q13363 masked 13 ordered regions. (221 X added.) #MASK 00:00:04 CTNA1_HUMAN__P35221 masked 33 ordered regions. (329 X added.) #MASK 00:00:04 HDAC2_HUMAN__Q92769 masked 18 ordered regions. (240 X added.) #MASK 00:00:04 HIC1_HUMAN__Q14526 masked 22 ordered regions. (221 X added.) #MASK 00:00:04 IKZF1_HUMAN__Q13422 masked 8 ordered regions. (110 X added.) #MASK 00:00:04 ITF2_HUMAN__P15884 masked 3 ordered regions. (30 X added.) #MASK 00:00:04 KAT2B_HUMAN__Q92831 masked 24 ordered regions. (408 X added.) #MASK 00:00:04 LCORL_HUMAN__Q8N3X6 masked 22 ordered regions. (117 X added.) #MASK 00:00:04 LCOR_HUMAN__Q96JN0 masked 7 ordered regions. (17 X added.) #MASK 00:00:04 MDS1_HUMAN__Q13465 masked 3 ordered regions. (35 X added.) #MASK 00:00:04 NOL4L_HUMAN__Q96MY1 masked 2 ordered regions. (27 X added.) #MASK 00:00:04 NRIP1_HUMAN__P48552 masked 10 ordered regions. (26 X added.) #MASK 00:00:04 RBBP5_HUMAN__Q15291 masked 14 ordered regions. (234 X added.) #MASK 00:00:04 SOBP_HUMAN__A7XYQ1 masked 7 ordered regions. (143 X added.) #MASK 00:00:04 ZN219_HUMAN__Q9P2Y4 masked 15 ordered regions. (96 X added.) #FTMASK 00:00:04 FTMask: None #MASK 00:00:04 slimprob: Masking of input sequences complete. #SEARCH 00:00:04 20 sequences searched for 3 motifs: 30 occ. #SAVE 00:00:04 SLiMProb Intermediate saved as /srv/slimsuite/scratch/prod/slimprob/15120900016/slimprob.Commandline.FreqDis.pickle (Python pickle). #GZIP 00:00:04 /srv/slimsuite/scratch/prod/slimprob/15120900016/slimprob.Commandline.FreqDis.pickle zipped. #OCC 00:00:04 Processing 30 occurrences complete. #PROB 00:00:04 Calculating SLiM Probabilities complete. #COMB 00:00:04 Combined Occurrence Attributes complete. #OUT 00:00:04 Summary data for slimprob saved to /srv/slimsuite/scratch/prod/slimprob/15120900016/slimprob.csv #FAS 00:00:04 20 Sequences output to /srv/slimsuite/scratch/prod/slimprob/15120900016/slimprob.FreqDis.masked.fas. #RES 00:00:04 SLiMProb results output to /srv/slimsuite/scratch/prod/slimprob/15120900016/slimprob.(occ.)csv and /srv/slimsuite/scratch/prod/slimprob/15120900016/slimprob.* #LOG 00:00:04 SLiMProb V2.2.5 End: Wed Dec 9 01:17:26 2015 #JOBID 00:00:04 15120900016 #REST 00:00:04 URL for future retrieval: http://rest.slimsuite.unsw.edu.au/retrieve&jobid=15120900016&rest=format&password=None