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Alias Data for genome=$ALIAS

$DATAPATH=/srv/slimsuite/data/genomes
$ALIAS=$DATAPATH/2015-04-15.Ensembl/$ALIAS.dna.toplevel.fa
$ALIAS=$DATAPATH/2014-04-11.Ensembl/$ALIAS.dna.toplevel.fa
$ALIAS=$DATAPATH/vectorbase/$ALIAS.fa

Aliases

AaegL3 Aag2 AaloF1 Aedes Human Megabat Mosquito Xenopus

/srv/slimsuite/data/genomes/2014-04-11.Ensembl/*.dna.toplevel.fa

Acyrthosiphon_pisum.GCA_000142985.2.22 Aedes_aegypti.AaegL2.22 Aegilops_tauschii.GCA_000347335.1.22 Ailuropoda_melanoleuca.ailMel1.75 Albugo_laibachii.ENA1.22 Amborella_trichopoda.GCA_000471905.1.22 Amphimedon_queenslandica.Aqu1.22 Anas_platyrhynchos.BGI_duck_1.0.75 Anolis_carolinensis.AnoCar2.0.75 Anopheles_darlingi.AdarC1.22 Anopheles_gambiae.AgamP3.22 Apis_mellifera.Amel4.0.22 Arabidopsis_lyrata.v.1.0.22 Arabidopsis_thaliana.TAIR10.22 Ashbya_gossypii.ASM9102v1.22 Aspergillus_clavatus.CADRE.22 Aspergillus_flavus.JCVI-afl1-v2.0.22 Aspergillus_fumigatus.CADRE.22 Aspergillus_nidulans.ASM1142v1.22 Aspergillus_niger.CADRE.22 Aspergillus_oryzae.CADRE2.22 Aspergillus_terreus.CADRE.22 Astyanax_mexicanus.AstMex102.75 Atta_cephalotes.GCA_000143395.2.22 Bigelowiella_natans.GCA_000320545.1.22 Blumeria_graminis.EF1.22 Bombyx_mori.GCA_000151625.1.22 Bos_taurus.UMD3.1.75 Botryotinia_fuckeliana.B05.10_v2.22 Brachypodium_distachyon.v1.0.22 Brassica_rapa.IVFCAASv1.22 Brugia_malayi.B_malayi-3.0.22 Caenorhabditis_brenneri.C_brenneri-6.0.1b.22 Caenorhabditis_briggsae.CB4.22 Caenorhabditis_elegans.WBcel235.22 Caenorhabditis_japonica.C_japonica-7.0.1.22 Caenorhabditis_remanei.C_remanei-15.0.1.22 Callithrix_jacchus.C_jacchus3.2.1.75 Canis_familiaris.CanFam3.1.75 Capitella_teleta.GCA_000328365.1.22 Cavia_porcellus.cavPor3.75 Chlamydomonas_reinhardtii.v3.1.22 Choloepus_hoffmanni.choHof1.75 Ciona_intestinalis.KH.75 Ciona_savignyi.CSAV2.0.75 Crassostrea_gigas.GCA_000297895.1.22 Cryptococcus_neoformans.GCA_000091045.1.22 Culex_quinquefasciatus.CpipJ1.22 Cyanidioschyzon_merolae.ASM9120v1.22 Danaus_plexippus.DanPle_1.0.22 Danio_rerio.Zv9.75 Daphnia_pulex.GCA_000187875.1.22 Dasypus_novemcinctus.Dasnov3.0.75 Dendroctonus_ponderosae.GCA_000355655.1.22 Dictyostelium_discoideum.dictybase.01.22 Dipodomys_ordii.dipOrd1.75 Drosophila_ananassae.dana_caf1.22 Drosophila_erecta.dere_caf1.22 Drosophila_grimshawi.dgri_caf1.22 Drosophila_melanogaster.BDGP5.22 Drosophila_mojavensis.dmoj_caf1.22 Drosophila_persimilis.dper_caf1.22 Drosophila_pseudoobscura.HGSC2.22 Drosophila_sechellia.dsec_caf1.22 Drosophila_simulans.WUGSC1.22 Drosophila_virilis.dvir_caf1.22 Drosophila_willistoni.dwil_caf1.22 Drosophila_yakuba.dyak_r1.3_FB2008_07.22 Echinops_telfairi.TENREC.75 Emiliania_huxleyi.GCA_000372725.1.22 Entamoeba_histolytica.JCVI-ESG2-1.0.22 Equus_caballus.EquCab2.75 Erinaceus_europaeus.HEDGEHOG.75 Felis_catus.Felis_catus_6.2.75 Ficedula_albicollis.FicAlb_1.4.75 Fusarium_oxysporum.FO2.22 Gadus_morhua.gadMor1.75 Gaeumannomyces_graminis.Gae_graminis_V2.22 Gallus_gallus.Galgal4.75 Gasterosteus_aculeatus.BROADS1.75 Giardia_lamblia.GCA_000002435.1.22 Gibberella_moniliformis.ASM14955v1.22 Gibberella_zeae.ASM24013v2.22 Glomerella_graminicola.GCA_000149035.1.22 Glycine_max.V1.0.22 Gorilla_gorilla.gorGor3.1.75 Guillardia_theta.GCA_000315625.1.22 Heliconius_melpomene.Hmel1.22 Helobdella_robusta.GCA_000326865.1.22 Homo_sapiens.GRCh37.75 Hordeum_vulgare.030312v2.22 Hyaloperonospora_arabidopsidis.HyaAraEmoy2_2.0.22 Ictidomys_tridecemlineatus.spetri2.75 Ixodes_scapularis.IscaW1.22 Komagataella_pastoris.GCA_000027005.1.22 Latimeria_chalumnae.LatCha1.75 Leishmania_major.ASM272v2.22 Lepisosteus_oculatus.LepOcu1.75 Leptosphaeria_maculans.ASM23037v1.22 Loa_loa.Loa_loa_V3.22 Lottia_gigantea.GCA_000327385.1.22 Loxodonta_africana.loxAfr3.75 Macaca_mulatta.MMUL_1.75 Macropus_eugenii.Meug_1.0.75 Magnaporthe_oryzae.MG8.22 Magnaporthe_poae.Mag_poae_ATCC_64411_V1.22 Medicago_truncatula.GCA_000219495.1.22 Megaselia_scalaris.Msca1.22 Melampsora_laricipopulina.GCA_000204055.1.22 Meleagris_gallopavo.UMD2.75 Microbotryum_violaceum.GCA_000166175.1.22 Microcebus_murinus.micMur1.75 Monodelphis_domestica.BROADO5.75 Mus_musculus.GRCm38.75 Musa_acuminata.MA1.22 Myotis_lucifugus.Myoluc2.0.75 Nasonia_vitripennis.GCA_000002325.2.22 Nectria_haematococca.v2.0.22 Nematostella_vectensis.GCA_000209225.1.22 Neosartorya_fischeri.CADRE.22 Neurospora_crassa.ASM18292v1.22 Nomascus_leucogenys.Nleu1.0.75 Ochotona_princeps.pika.75 Onchocerca_volvulus.Cameroon_v3.22 Oreochromis_niloticus.Orenil1.0.75 Ornithorhynchus_anatinus.OANA5.75 Oryctolagus_cuniculus.OryCun2.0.75 Oryza_barthii.ABRL00000000.22 Oryza_brachyantha.Oryza_brachyantha.v1.4b.22 Oryza_glaberrima.AGI1.1.22 Oryza_glumaepatula.ALNU02000000.22 Oryza_indica.ASM465v1.22 Oryza_meridionalis.ALNW00000000.22 Oryza_nivara.AWHD00000000.22 Oryza_punctata.AVCL00000000.22 Oryza_sativa.IRGSP-1.0.22 Oryzias_latipes.MEDAKA1.75 Otolemur_garnettii.OtoGar3.75 Ovis_aries.Oar_v3.1.75 Pan_troglodytes.CHIMP2.1.4.75 Paramecium_tetraurelia.GCA_000165425.1.22 Pediculus_humanus.PhumU1.22 Pelodiscus_sinensis.PelSin_1.0.75 Petromyzon_marinus.Pmarinus_7.0.75 Phaeodactylum_tricornutum.ASM15095v2.22 Phaeosphaeria_nodorum.ASM14691v1.22 Physcomitrella_patens.ASM242v1.22 Phytophthora_infestans.ASM14294v1.22 Phytophthora_ramorum.ASM14973v1.22 Phytophthora_sojae.ASM14975v1.22 Plasmodium_berghei.May_2010.22 Plasmodium_chabaudi.May_2010.22 Plasmodium_falciparum.ASM276v1.22 Plasmodium_knowlesi.EPr1.22 Plasmodium_vivax.ASM241v1.22 Pongo_abelii.PPYG2.75 Populus_trichocarpa.JGI2.0.22 Pristionchus_pacificus.P_pacificus-5.0.22 Procavia_capensis.proCap1.75 Prunus_persica.GCA_000346465.1.22 Pteropus_vampyrus.pteVam1.75 Puccinia_graminis.ASM14992v1.22 Puccinia_triticina.ASM15152v1.22 Pyrenophora_teres.GCA_000166005.1.22 Pyrenophora_triticirepentis.GCA_000149985.1.22 Pythium_aphanidermatum.GCA_000387445.2.22 Pythium_arrhenomanes.GCA_000387505.2.22 Pythium_irregulare.GCA_000387425.2.22 Pythium_iwayamai.GCA_000387465.2.22 Pythium_ultimum.pug.22 Pythium_vexans.GCA_000387545.2.22 Rattus_norvegicus.Rnor_5.0.75 Rhodnius_prolixus.RproC1.22 Saccharomyces_cerevisiae.R64-1-1.22 Sarcophilus_harrisii.DEVIL7.0.75 Schistosoma_mansoni.ASM23792v2.22 Schizosaccharomyces_cryophilus.GCA_000004155.2.22 Schizosaccharomyces_japonicus.GCA_000149845.2.22 Schizosaccharomyces_octosporus.GCA_000150505.2.22 Schizosaccharomyces_pombe.ASM294v2.22 Sclerotinia_sclerotiorum.ASM14694v1.22 Selaginella_moellendorffii.v1.0.22 Setaria_italica.JGIv2.0.22 Solanum_lycopersicum.SL2.40.22 Solanum_tuberosum.3.0.22 Solenopsis_invicta.GCA_000188075.1.22 Sorex_araneus.COMMON_SHREW1.75 Sporisorium_reilianum.GCA_000230245.1.22 Strigamia_maritima.Smar1.22 Strongylocentrotus_purpuratus.GCA_000002235.2.22 Sus_scrofa.Sscrofa10.2.75 Taeniopygia_guttata.taeGut3.2.4.75 Takifugu_rubripes.FUGU4.75 Tarsius_syrichta.tarSyr1.75 Tetrahymena_thermophila.JCVI-TTA1-2.2.22 Tetranychus_urticae.GCA_000239435.1.22 Tetraodon_nigroviridis.TETRAODON8.75 Thalassiosira_pseudonana.ASM14940v1.22 Toxoplasma_gondii.ToxoDB-7.1.22 Tribolium_castaneum.Tcas3.22 Trichinella_spiralis.Tspiralis1.22 Trichoderma_reesei.GCA_000167675.2.22 Trichoderma_virens.ASM17099v1.22 Trichoplax_adhaerens.ASM15027v1.22 Triticum_aestivum.IWGSP1.22 Triticum_urartu.GCA_000347455.1.22 Trypanosoma_brucei.TryBru_Apr2005_chr11.22 Tuber_melanosporum.ASM15164v1.22 Tupaia_belangeri.TREESHREW.75 Tursiops_truncatus.turTru1.75 Ustilago_maydis.UM1.22 Verticillium_dahliae.GCA_000150675.1.22 Vicugna_pacos.vicPac1.75 Vitis_vinifera.IGGP_12x.22 Xenopus_tropicalis.JGI_4.2.75 Xiphophorus_maculatus.Xipmac4.4.2.75 Yarrowia_lipolytica.GCA_000002525.1.22 Zea_mays.AGPv3.22 Zymoseptoria_tritici.MG2.22

/srv/slimsuite/data/genomes/2015-04-15.Ensembl/*.dna.toplevel.fa

Acyrthosiphon_pisum.GCA_000142985.2.26 Aedes_aegypti.AaegL3.26 Aegilops_tauschii.GCA_000347335.1.26 Ailuropoda_melanoleuca.ailMel1 Albugo_laibachii.ENA1.26 Amborella_trichopoda.GCA_000471905.1.26 Amphimedon_queenslandica.Aqu1.26 Anas_platyrhynchos.BGI_duck_1.0 Anolis_carolinensis.AnoCar2.0 Anopheles_darlingi.AdarC3.26 Anopheles_gambiae.AgamP4.26 Apis_mellifera.GCA_000002195.1.26 Arabidopsis_lyrata.v.1.0.26 Arabidopsis_thaliana.TAIR10.26 Ashbya_gossypii.ASM9102v1.26 Aspergillus_clavatus.CADRE.26 Aspergillus_flavus.JCVI-afl1-v2.0.26 Aspergillus_fumigatus.CADRE.26 Aspergillus_nidulans.ASM1142v1.26 Aspergillus_niger.CADRE.26 Aspergillus_oryzae.CADRE2.26 Aspergillus_terreus.CADRE.26 Astyanax_mexicanus.AstMex102 Atta_cephalotes.GCA_000143395.2.26 Bigelowiella_natans.GCA_000320545.1.26 Blumeria_graminis.EF1.26 Bombyx_mori.GCA_000151625.1.26 Bos_taurus.UMD3.1 Botrytis_cinerea.B05.10_v2.26 Brachypodium_distachyon.v1.0.26 Brassica_oleracea.v2.1.26 Brassica_rapa.IVFCAASv1.26 Brugia_malayi.B_malayi-3.0.26 Caenorhabditis_brenneri.C_brenneri-6.0.1b.26 Caenorhabditis_briggsae.CB4.26 Caenorhabditis_elegans.WBcel235.26 Caenorhabditis_japonica.C_japonica-7.0.1.26 Caenorhabditis_remanei.C_remanei-15.0.1.26 Callithrix_jacchus.C_jacchus3.2.1 Canis_familiaris.CanFam3.1 Capitella_teleta.GCA_000328365.1.26 Cavia_porcellus.cavPor3 Chlamydomonas_reinhardtii.v3.1.26 Chlorocebus_sabaeus.ChlSab1.1 Choloepus_hoffmanni.choHof1 Ciona_intestinalis.KH Ciona_savignyi.CSAV2.0 Colletotrichum_gloeosporioides.GCA_000319635.1.26 Colletotrichum_graminicola.GCA_000149035.1.26 Colletotrichum_higginsianum.GCA_000313795.2.26 Colletotrichum_orbiculare.GCA_000350065.1.26 Crassostrea_gigas.GCA_000297895.1.26 Cryptococcus_neoformans.GCA_000091045.1.26 Culex_quinquefasciatus.CpipJ2.26 Cyanidioschyzon_merolae.ASM9120v1.26 Danaus_plexippus.DanPle_1.0.26 Danio_rerio.Zv9 Daphnia_pulex.GCA_000187875.1.26 Dasypus_novemcinctus.Dasnov3.0 Dendroctonus_ponderosae.GCA_000355655.1.26 Dictyostelium_discoideum.dictybase.01.26 Dipodomys_ordii.dipOrd1 Dothistroma_septosporum.GCA_000340195.1.26 Drosophila_ananassae.GCA_000005115.1.26 Drosophila_erecta.GCA_000005135.1.26 Drosophila_grimshawi.GCA_000005155.1.26 Drosophila_melanogaster.BDGP6.26 Drosophila_mojavensis.GCA_000005175.1.26 Drosophila_persimilis.GCA_000005195.1.26 Drosophila_pseudoobscura.GCA_000001765.2.26 Drosophila_sechellia.GCA_000005215.1.26 Drosophila_simulans.GCA_000259055.1.26 Drosophila_virilis.GCA_000005245.1.26 Drosophila_willistoni.GCA_000005925.1.26 Drosophila_yakuba.GCA_000005975.1.26 Echinops_telfairi.TENREC Emiliania_huxleyi.GCA_000372725.1.26 Entamoeba_histolytica.JCVI-ESG2-1.0.26 Equus_caballus.EquCab2 Erinaceus_europaeus.HEDGEHOG Felis_catus.Felis_catus_6.2 Ficedula_albicollis.FicAlb_1.4 Fusarium_fujikuroi.EF1.26 Fusarium_graminearum.RR.26 Fusarium_oxysporum.FO2.26 Fusarium_pseudograminearum.GCA_000303195.1.26 Fusarium_solani.v2.0.26 Fusarium_verticillioides.ASM14955v1.26 Gadus_morhua.gadMor1 Gaeumannomyces_graminis.Gae_graminis_V2.26 Gallus_gallus.Galgal4 Gasterosteus_aculeatus.BROADS1 Giardia_lamblia.GCA_000002435.1.26 Glycine_max.V1.0.26 Gorilla_gorilla.gorGor3.1 Guillardia_theta.GCA_000315625.1.26 Heliconius_melpomene.Hmel1.26 Helobdella_robusta.GCA_000326865.1.26 Homo_sapiens.GRCh38 Hordeum_vulgare.082214v1.26 Hyaloperonospora_arabidopsidis.HyaAraEmoy2_2.0.26 Ictidomys_tridecemlineatus.spetri2 Ixodes_scapularis.IscaW1.26 Komagataella_pastoris.GCA_000027005.1.26 Latimeria_chalumnae.LatCha1 Leersia_perrieri.Lperr_V1.4.26 Leishmania_major.ASM272v2.26 Lepisosteus_oculatus.LepOcu1 Leptosphaeria_maculans.ASM23037v1.26 Loa_loa.Loa_loa_V3.26 Lottia_gigantea.GCA_000327385.1.26 Loxodonta_africana.loxAfr3 Macaca_mulatta.MMUL_1 Macropus_eugenii.Meug_1.0 Magnaporthe_oryzae.MG8.26 Magnaporthe_poae.Mag_poae_ATCC_64411_V1.26 Medicago_truncatula.GCA_000219495.2.26 Megaselia_scalaris.Msca1.26 Melampsora_laricipopulina.GCA_000204055.1.26 Meleagris_gallopavo.UMD2 Melitaea_cinxia.MelCinx1.0.26 Microbotryum_violaceum.GCA_000166175.1.26 Microcebus_murinus.micMur1 Mnemiopsis_leidyi.GCA_000226015.1.26 Monodelphis_domestica.BROADO5 Mus_musculus.GRCm38 Musa_acuminata.MA1.26 Myotis_lucifugus.Myoluc2.0 Nasonia_vitripennis.GCA_000002325.2.26 Nematostella_vectensis.GCA_000209225.1.26 Neosartorya_fischeri.CADRE.26 Neurospora_crassa.ASM18292v1.26 Nomascus_leucogenys.Nleu1.0 Ochotona_princeps.pika Onchocerca_volvulus.Cameroon_v3.26 Oreochromis_niloticus.Orenil1.0 Ornithorhynchus_anatinus.OANA5 Oryctolagus_cuniculus.OryCun2.0 Oryza_barthii.ABRL00000000.26 Oryza_brachyantha.Oryza_brachyantha.v1.4b.26 Oryza_glaberrima.AGI1.1.26 Oryza_glumaepatula.ALNU02000000.26 Oryza_indica.ASM465v1.26 Oryza_longistaminata.v0117-2013Aug.26 Oryza_meridionalis.Oryza_meridionalis_v1.3.26 Oryza_nivara.AWHD00000000.26 Oryza_punctata.AVCL00000000.26 Oryza_rufipogon.PRJEB4137.26 Oryza_sativa.IRGSP-1.0.26 Oryzias_latipes.MEDAKA1 Ostreococcus_lucimarinus.GCA_000092065.1.26 Otolemur_garnettii.OtoGar3 Ovis_aries.Oar_v3.1 Pan_troglodytes.CHIMP2.1.4 Papio_anubis.PapAnu2.0 Paramecium_tetraurelia.GCA_000165425.1.26 Pediculus_humanus.PhumU2.26 Pelodiscus_sinensis.PelSin_1.0 Petromyzon_marinus.Pmarinus_7.0 Phaeodactylum_tricornutum.ASM15095v2.26 Phaeosphaeria_nodorum.ASM14691v1.26 Physcomitrella_patens.ASM242v1.26 Phytophthora_infestans.ASM14294v1.26 Phytophthora_kernoviae.GCA_000333075.1.26 Phytophthora_lateralis.GCA_000318465.1.26 Phytophthora_parasitica.GCA_000365505.1.26 Phytophthora_ramorum.ASM14973v1.26 Phytophthora_sojae.ASM14975v1.26 Plasmodium_berghei.May_2010.26 Plasmodium_chabaudi.May_2010.26 Plasmodium_falciparum.ASM276v1.26 Plasmodium_knowlesi.EPr1.26 Plasmodium_vivax.ASM241v1.26 Poecilia_formosa.PoeFor_5.1.2 Pongo_abelii.PPYG2 Populus_trichocarpa.JGI2.0.26 Pristionchus_pacificus.P_pacificus-5.0.26 Procavia_capensis.proCap1 Prunus_persica.GCA_000346465.1.26 Pteropus_vampyrus.pteVam1 Puccinia_graminis.ASM14992v1.26 Puccinia_triticina.ASM15152v1.26 Pyrenophora_teres.GCA_000166005.1.26 Pyrenophora_triticirepentis.GCA_000149985.1.26 Pythium_aphanidermatum.GCA_000387445.2.26 Pythium_arrhenomanes.GCA_000387505.2.26 Pythium_irregulare.GCA_000387425.2.26 Pythium_iwayamai.GCA_000387465.2.26 Pythium_ultimum.pug.26 Pythium_vexans.GCA_000387545.2.26 Rattus_norvegicus.Rnor_5.0 Rhodnius_prolixus.RproC1.26 Saccharomyces_cerevisiae.R64-1-1.26 Sarcophilus_harrisii.DEVIL7.0 Schistosoma_mansoni.ASM23792v2.26 Schizosaccharomyces_cryophilus.GCA_000004155.2.26 Schizosaccharomyces_japonicus.GCA_000149845.2.26 Schizosaccharomyces_octosporus.GCA_000150505.2.26 Schizosaccharomyces_pombe.ASM294v2.26 Sclerotinia_sclerotiorum.ASM14694v1.26 Selaginella_moellendorffii.v1.0.26 Setaria_italica.JGIv2.0.26 Solanum_lycopersicum.SL2.40.26 Solanum_tuberosum.3.0.26 Solenopsis_invicta.GCA_000188075.1.26 Sorex_araneus.COMMON_SHREW1 Sorghum_bicolor.Sorbi1.26 Sporisorium_reilianum.GCA_000230245.1.26 Strigamia_maritima.Smar1.26 Strongylocentrotus_purpuratus.GCA_000002235.2.26 Sus_scrofa.Sscrofa10.2 Taeniopygia_guttata.taeGut3.2.4 Takifugu_rubripes.FUGU4 Tarsius_syrichta.tarSyr1 Tetrahymena_thermophila.JCVI-TTA1-2.2.26 Tetranychus_urticae.GCA_000239435.1.26 Tetraodon_nigroviridis.TETRAODON8 Thalassiosira_pseudonana.ASM14940v1.26 Theobroma_cacao.GCA_000403535.1.26 Toxoplasma_gondii.ToxoDB-7.1.26 Tribolium_castaneum.Tcas3.26 Trichinella_spiralis.Tspiralis1.26 Trichoderma_reesei.GCA_000167675.2.26 Trichoderma_virens.ASM17099v1.26 Trichoplax_adhaerens.ASM15027v1.26 Triticum_aestivum.IWGSC2.26 Triticum_urartu.GCA_000347455.1.26 Trypanosoma_brucei.TryBru_Apr2005_chr11.26 Tuber_melanosporum.ASM15164v1.26 Tupaia_belangeri.TREESHREW Tursiops_truncatus.turTru1 Ustilago_maydis.UM1.26 Verticillium_dahliae.GCA_000150675.1.26 Vicugna_pacos.vicPac1 Vitis_vinifera.IGGP_12x.26 Xenopus_tropicalis.JGI_4.2 Xiphophorus_maculatus.Xipmac4.4.2 Yarrowia_lipolytica.GCA_000002525.1.26 Zea_mays.AGPv3.26 Zootermopsis_nevadensis.GCA_000696155.1.26 Zymoseptoria_tritici.MG2.26

/srv/slimsuite/data/genomes/vectorbase/*.fa

Aedes-aegypti-Aag2-cell-line_CONTIGS_Aag2 Aedes-aegypti-Liverpool_CONTIGS_AaegL3 Aedes-albopictus-Foshan_CONTIGS_AaloF1


© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.