This page gives the SLiMSuite tools available as REST services. For general REST help, see: http://rest.slimsuite.unsw.edu.au/help.
Addition of REST services for SLiMSuite tools is ongoing and the list below may be incomplete. All tools that can be accessed through the
SLiMSuite module can, in principle, be accessed via the REST service. However, not all tools will have useful output returned. Please contact me if you want additional REST services from SLiMSuite added.
To test where
program is accessible via the REST interface, try:
If the program docstring is returned, see if specific REST out formats have been documented:
If in doubt, try running it with full output and see what is returned:
(Note that most programs will need additional input options to run. See http://rest.slimsuite.unsw.edu.au/help.)
Implemented REST Tools
The following REST services are currently available:
iuscore = IUPred disorder scoring. Requires
gopher = GOPHER orthology prediction. Requires:
qslimfinder = Query SLiMFinder de novo SLiM discovery. Requires
rlc = Relative Local Conservation scoring. Requires
slimmaker = SLiMMaker Simple Regex SLiM generation from aligned peptides. Requires:
slimfinder = SLiMFinder de novo SLiM discovery. Requires
slimprob = SLiMProb known SLiM discovery. Requires
zen = Random Zen wisdom generator. (Primarily for testing the server.)
The following REST services are currently in development:
pingu = Protein-protein interaction extraction. Requires
uniprot = Uniprot download and parsing. Requires:
xref = Database cross-referencing tools. Requires
Please visit http://slimsuite.blogspot.com.au or email firstname.lastname@example.org.
© 2015 RJ Edwards. Contact: email@example.com.