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Alias Data for motifs=$ALIAS

$DATAPATH=/srv/slimsuite/data/motifs/
$ELMPATH=/srv/slimsuite/data/elm2015/ELM_Classes/
$ALIAS=$DATAPATH$ALIAS.motifs
$ALIAS=$ELMPATH$ALIAS.motif

Aliases

elm

/srv/slimsuite/data/elm2015/ELM_Classes/*.motif

CLV_C14_Caspase3-7 CLV_C14_Caspase3-7.reduced CLV_MEL_PAP_1 CLV_MEL_PAP_1.reduced CLV_NRD_NRD_1 CLV_PCSK_FUR_1 CLV_PCSK_FUR_1.reduced CLV_PCSK_KEX2_1 CLV_PCSK_PC1ET2_1 CLV_PCSK_PC1ET2_1.reduced CLV_PCSK_PC7_1 CLV_PCSK_SKI1_1 CLV_Separin_Fungi CLV_Separin_Fungi.reduced CLV_Separin_Metazoa CLV_Separin_Metazoa.reduced CLV_TASPASE1 DEG_APCC_DBOX_1 DEG_APCC_DBOX_1.reduced DEG_APCC_KENBOX_2 DEG_APCC_KENBOX_2.reduced DEG_APCC_TPR_1 DEG_APCC_TPR_1.reduced DEG_COP1 DEG_COP1.reduced DEG_CRL4_CDT2_1 DEG_CRL4_CDT2_1.reduced DEG_CRL4_CDT2_2 DEG_MDM2_1 DEG_MDM2_1.reduced DEG_Nend_Nbox_1 DEG_Nend_UBRbox_1 DEG_Nend_UBRbox_2 DEG_Nend_UBRbox_3 DEG_Nend_UBRbox_4 DEG_Nend_UBRbox_4.reduced DEG_ODPH_VHL_1 DEG_ODPH_VHL_1.reduced DEG_SCF_COI1_1 DEG_SCF_COI1_1.reduced DEG_SCF_FBW7_1 DEG_SCF_FBW7_1.reduced DEG_SCF_FBW7_2 DEG_SCF_SKP2-CKS1_1 DEG_SCF_SKP2-CKS1_1.reduced DEG_SCF_TIR1_1 DEG_SCF_TIR1_1.reduced DEG_SCF_TRCP1_1 DEG_SCF_TRCP1_1.reduced DEG_SIAH_1 DEG_SIAH_1.reduced DOC_AGCK_PIF_1 DOC_AGCK_PIF_1.reduced DOC_AGCK_PIF_2 DOC_AGCK_PIF_2.reduced DOC_AGCK_PIF_3 DOC_AGCK_PIF_3.reduced DOC_ANK_TNKS_1 DOC_ANK_TNKS_1.reduced DOC_CKS1_1 DOC_CKS1_1.reduced DOC_CYCLIN_1 DOC_CYCLIN_1.reduced DOC_MAPK_1 DOC_MAPK_2 DOC_MAPK_2.reduced DOC_PIKK_1 DOC_PIKK_1.reduced DOC_PP1_MyPhoNE_1 DOC_PP1_MyPhoNE_1.reduced DOC_PP1_RVXF_1 DOC_PP1_RVXF_1.reduced DOC_PP1_SILK_1 DOC_PP1_SILK_1.reduced DOC_PP2A_KARD_1 DOC_PP2B_LxvP_1 DOC_PP2B_LxvP_1.reduced DOC_PP2B_PxIxI_1 DOC_PP2B_PxIxI_1.reduced DOC_SPAK_OSR1_1 DOC_SPAK_OSR1_1.reduced DOC_USP7_1 DOC_USP7_2 DOC_WD40_RPTOR_TOS_1 DOC_WD40_RPTOR_TOS_1.reduced DOC_WW_Pin1_4 LIG_14-3-3.1433slims LIG_14-3-3.DEST LIG_14-3-3 LIG_14-3-3.phosphomimic LIG_14-3-3_1 LIG_14-3-3_1.reduced LIG_14-3-3_2 LIG_14-3-3_2.reduced LIG_14-3-3_3 LIG_14-3-3_3.reduced LIG_AP2alpha_1 LIG_AP2alpha_1.reduced LIG_AP2alpha_2 LIG_AP2alpha_2.reduced LIG_APCC_Cbox_1 LIG_APCC_Cbox_2 LIG_APCC_Cbox_2.reduced LIG_AP_GAE_1 LIG_AP_GAE_1.reduced LIG_Actin_RPEL_3 LIG_Actin_RPEL_3.reduced LIG_Actin_WH2_1 LIG_Actin_WH2_2 LIG_BIR_III_1 LIG_BIR_III_2 LIG_BIR_III_2.reduced LIG_BIR_III_3 LIG_BIR_III_3.reduced LIG_BIR_III_4 LIG_BIR_II_1 LIG_BRCT_BRCA1_1 LIG_BRCT_BRCA1_1.reduced LIG_BRCT_BRCA1_2 LIG_BRCT_MDC1_1 LIG_CAP-Gly_1 LIG_CAP-Gly_1.reduced LIG_CAP-Gly_2 LIG_CNOT1_NIM_1 LIG_CNOT1_NIM_1.reduced LIG_CORNRBOX LIG_CORNRBOX.reduced LIG_CaMK_CASK_1 LIG_CaMK_CASK_1.reduced LIG_Clathr_ClatBox_1 LIG_Clathr_ClatBox_1.reduced LIG_Clathr_ClatBox_2 LIG_CtBP_PxDLS_1 LIG_CtBP_PxDLS_1.reduced LIG_Dynein_DLC8_1 LIG_Dynein_DLC8_1.reduced LIG_EABR_CEP55_1 LIG_EABR_CEP55_1.reduced LIG_EF_ALG2_ABM_1 LIG_EF_ALG2_ABM_1.reduced LIG_EF_ALG2_ABM_2 LIG_EF_ALG2_ABM_2.reduced LIG_EH1_1 LIG_EH_1 LIG_EH_1.reduced LIG_EVH1_1 LIG_EVH1_1.reduced LIG_EVH1_2 LIG_EVH1_2.reduced LIG_EVH1_3 LIG_EVH1_3.reduced LIG_FAT_LD_1 LIG_FAT_LD_1.reduced LIG_FHA_1 LIG_FHA_1.reduced LIG_FHA_2 LIG_GLEBS_BUB3_1 LIG_GLEBS_BUB3_1.reduced LIG_GYF LIG_GYF.reduced LIG_HCF-1_HBM_1 LIG_HCF-1_HBM_1.reduced LIG_HOMEOBOX LIG_HOMEOBOX.reduced LIG_HP1_1 LIG_HP1_1.reduced LIG_IBS_1 LIG_IQ LIG_IQ.reduced LIG_Integrin_isoDGR_1 LIG_Integrin_isoDGR_1.reduced LIG_KEPE_1 LIG_KEPE_1.reduced LIG_KEPE_2 LIG_KEPE_2.reduced LIG_KEPE_3 LIG_KEPE_3.reduced LIG_LIR_Apic_2 LIG_LIR_Gen_1 LIG_LIR_Gen_1.reduced LIG_LIR_LC3C_4 LIG_LIR_Nem_3 LIG_LYPXL_L_2 LIG_LYPXL_L_2.reduced LIG_LYPXL_S_1 LIG_LYPXL_S_1.reduced LIG_MAD2 LIG_MAD2.reduced LIG_MYND_1 LIG_MYND_1.reduced LIG_MYND_2 LIG_MYND_2.reduced LIG_MYND_3 LIG_NBox_RRM_1 LIG_NRBOX LIG_NRBOX.reduced LIG_OCRL_FandH_1 LIG_OCRL_FandH_1.reduced LIG_PAM2_1 LIG_PAM2_1.reduced LIG_PAM2_2 LIG_PAM2_2.reduced LIG_PCNA_PIPBox_1 LIG_PCNA_PIPBox_1.reduced LIG_PDZ_Class_1 LIG_PDZ_Class_1.reduced LIG_PDZ_Class_2 LIG_PDZ_Class_2.reduced LIG_PDZ_Class_3 LIG_PTAP_UEV_1 LIG_PTAP_UEV_1.reduced LIG_PTB_Apo_2 LIG_PTB_Apo_2.reduced LIG_PTB_Phospho_1 LIG_PTB_Phospho_1.reduced LIG_RGD LIG_RGD.reduced LIG_RRM_PRI_1 LIG_RRM_PRI_1.reduced LIG_Rb_LxCxE_1 LIG_Rb_LxCxE_1.reduced LIG_Rb_pABgroove_1 LIG_Rb_pABgroove_1.reduced LIG_SH2_GRB2 LIG_SH2_GRB2.reduced LIG_SH2_PTP2 LIG_SH2_SRC LIG_SH2_STAT3 LIG_SH2_STAT3.reduced LIG_SH2_STAT5 LIG_SH2_STAT5.reduced LIG_SH2_STAT6 LIG_SH3_1 LIG_SH3_1.reduced LIG_SH3_2 LIG_SH3_2.reduced LIG_SH3_3 LIG_SH3_3.reduced LIG_SH3_4 LIG_SH3_5 LIG_SH3_5.reduced LIG_SPRY_1 LIG_SUFU_1 LIG_SUMO_SIM_anti_2 LIG_SUMO_SIM_par_1 LIG_SUMO_SIM_par_1.reduced LIG_Sin3_1 LIG_Sin3_1.reduced LIG_Sin3_2 LIG_Sin3_2.reduced LIG_Sin3_3 LIG_SxIP_EBH_1 LIG_SxIP_EBH_1.reduced LIG_TPR LIG_TPR.reduced LIG_TRAF2_1 LIG_TRAF2_1.reduced LIG_TRAF2_2 LIG_TRAF6 LIG_TRAF6.reduced LIG_TRFH_1 LIG_TRFH_1.reduced LIG_TYR_ITAM LIG_TYR_ITAM.reduced LIG_TYR_ITIM LIG_TYR_ITIM.reduced LIG_TYR_ITSM LIG_TYR_ITSM.reduced LIG_ULM_U2AF65_1 LIG_WD40_WDR5_VDV_1 LIG_WD40_WDR5_VDV_1.reduced LIG_WD40_WDR5_VDV_2 LIG_WD40_WDR5_WIN_1 LIG_WD40_WDR5_WIN_1.reduced LIG_WD40_WDR5_WIN_2 LIG_WD40_WDR5_WIN_2.reduced LIG_WD40_WDR5_WIN_3 LIG_WD40_WDR5_WIN_3.reduced LIG_WH1 LIG_WH1.reduced LIG_WRPW_1 LIG_WRPW_1.reduced LIG_WRPW_2 LIG_WW_1 LIG_WW_1.reduced LIG_WW_2 LIG_WW_2.reduced LIG_WW_3 LIG_eIF4E_1 LIG_eIF4E_1.reduced LIG_eIF4E_2 LIG_eIF4E_2.reduced MOD_ASX_betaOH_EGF MOD_ASX_betaOH_EGF.reduced MOD_CAAXbox MOD_CDK_1 MOD_CDK_1.reduced MOD_CK1_1 MOD_CK2_1 MOD_CMANNOS MOD_CMANNOS.reduced MOD_Cter_Amidation MOD_GSK3_1 MOD_GSK3_1.reduced MOD_GlcNHglycan MOD_GlcNHglycan.reduced MOD_LATS_1 MOD_LATS_1.reduced MOD_N-GLC_1 MOD_N-GLC_2 MOD_N-GLC_2.reduced MOD_NEK2_1 MOD_NEK2_2 MOD_NMyristoyl MOD_NMyristoyl.reduced MOD_OFUCOSY MOD_OFUCOSY.reduced MOD_OGLYCOS MOD_PIKK_1 MOD_PKA_1 MOD_PKA_1.reduced MOD_PKA_2 MOD_PKA_2.reduced MOD_PKB_1 MOD_PKB_1.reduced MOD_PK_1 MOD_PLK MOD_ProDKin_1 MOD_SPalmitoyl_2 MOD_SPalmitoyl_4 MOD_SPalmitoyl_4.reduced MOD_SUMO MOD_SUMO.reduced MOD_TYR_CSK MOD_TYR_CSK.reduced MOD_TYR_DYR MOD_TYR_DYR.reduced MOD_WntLipid TRG_AP2beta_CARGO_1 TRG_Cilium_Arf4_1 TRG_Cilium_RVxP_2 TRG_ENDOCYTIC_2 TRG_ER_FFAT_1 TRG_ER_FFAT_1.reduced TRG_ER_KDEL_1 TRG_ER_KDEL_1.reduced TRG_ER_diArg_1 TRG_ER_diArg_1.reduced TRG_ER_diLys_1 TRG_ER_diLys_1.reduced TRG_Golgi_diPhe_1 TRG_Golgi_diPhe_1.reduced TRG_LysEnd_APsAcLL_1 TRG_LysEnd_APsAcLL_1.reduced TRG_LysEnd_APsAcLL_3 TRG_LysEnd_APsAcLL_3.reduced TRG_LysEnd_GGAAcLL_1 TRG_LysEnd_GGAAcLL_1.reduced TRG_LysEnd_GGAAcLL_2 TRG_LysEnd_GGAAcLL_2.reduced TRG_NES_CRM1_1 TRG_NES_CRM1_1.reduced TRG_NLS_Bipartite_1 TRG_NLS_MonoCore_2 TRG_NLS_MonoCore_2.reduced TRG_NLS_MonoExtC_3 TRG_NLS_MonoExtN_4 TRG_NLS_MonoExtN_4.reduced TRG_PEX_1 TRG_PEX_1.reduced TRG_PEX_2 TRG_PEX_3 TRG_PTS1 TRG_PTS1.reduced TRG_PTS2

/srv/slimsuite/data/motifs/*.motifs

elm2008 elm2008.split elm2015 elm2015.reduced elm2015.reduced.split elm2015.split


© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.