SLiMSuite REST Server


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SLiMSuite Documentation

Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.

cmd: aafreq

Option Type: FILE

Modules: rje_seqgen qslimfinder_V1.9 slimfinder_V4.9 slimprob_V1.4 rje_markov rje_slimcore comparimotif_V3 qslimfinder slimfinder slimprob slimsearch


ModuleOptionDescriptionDefault
comparimotif_V3 aafreq=FILE Use FILE to replace uniform AAFreqs (FILE can be sequences or aafreq) None
qslimfinder aafreq=FILE Use FILE to replace individual sequence AAFreqs (FILE can be sequences or aafreq) None
qslimfinder_V1.9 aafreq=FILE Use FILE to replace individual sequence AAFreqs (FILE can be sequences or aafreq) None
rje_markov aafreq=FILE Generate expected 1mer frequencies from FILE of aafreq None
rje_seqgen aafreq=FILE File from which to read AA Freqs None
rje_slimcore aafreq=FILE Use FILE to replace individual sequence AAFreqs (FILE can be sequences or aafreq) None
slimfinder aafreq=FILE Use FILE to replace individual sequence AAFreqs (FILE can be sequences or aafreq) None
slimfinder_V4.9 aafreq=FILE Use FILE to replace individual sequence AAFreqs (FILE can be sequences or aafreq) None
slimprob aafreq=FILE Use FILE to replace individual sequence AAFreqs (FILE can be sequences or aafreq) None
slimprob_V1.4 aafreq=FILE Use FILE to replace individual sequence AAFreqs (FILE can be sequences or aafreq) None
slimsearch aafreq=FILE Use FILE to replace individual sequence AAFreqs (FILE can be sequences or aafreq) None

© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.