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SLiMSuite Documentation
Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.
cmd: aafreq
Modules: rje_seqgen qslimfinder_V1.9 slimfinder_V4.9 slimprob_V1.4 rje_markov rje_slimcore comparimotif_V3 qslimfinder slimfinder slimprob slimsearch
| Module | Option | Description | Default |
|---|---|---|---|
| comparimotif_V3 | aafreq=FILE |
Use FILE to replace uniform AAFreqs (FILE can be sequences or aafreq) | None |
| qslimfinder | aafreq=FILE |
Use FILE to replace individual sequence AAFreqs (FILE can be sequences or aafreq) | None |
| qslimfinder_V1.9 | aafreq=FILE |
Use FILE to replace individual sequence AAFreqs (FILE can be sequences or aafreq) | None |
| rje_markov | aafreq=FILE |
Generate expected 1mer frequencies from FILE of aafreq | None |
| rje_seqgen | aafreq=FILE |
File from which to read AA Freqs | None |
| rje_slimcore | aafreq=FILE |
Use FILE to replace individual sequence AAFreqs (FILE can be sequences or aafreq) | None |
| slimfinder | aafreq=AAFILE |
Use FILE to replace individual sequence AAFreqs (FILE can be sequences or aafreq) | None |
| slimfinder_V4.9 | aafreq=FILE |
Use FILE to replace individual sequence AAFreqs (FILE can be sequences or aafreq) | None |
| slimprob | aafreq=FILE |
Use FILE to replace individual sequence AAFreqs (FILE can be sequences or aafreq) | None |
| slimprob_V1.4 | aafreq=FILE |
Use FILE to replace individual sequence AAFreqs (FILE can be sequences or aafreq) | None |
| slimsearch | aafreq=FILE |
Use FILE to replace individual sequence AAFreqs (FILE can be sequences or aafreq) | None |
© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.