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SLiMSuite Documentation
Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.
cmd: alndir
Option Type: PATH
Modules: slimjim slim_pickings rje_motiflist rje_slimcalc rje_slimlist presto_V5
| Module | Option | Description | Default |
|---|---|---|---|
| presto_V5 | alndir=PATH |
Path to alignments of proteins containing motifs | ./ |
| rje_motiflist | alndir=PATH |
Path to alignments of proteins containing motifs | ./ |
| rje_slimcalc | alndir=PATH |
Path to pre-made alignment files | ./ |
| rje_slimlist | alndir=PATH |
Path to alignments of proteins containing motifs | ./ |
| slim_pickings | alndir=PATH |
Path to alignments of proteins containing motifs [./] * Use forward slashes (/) | Gopher/ALN/ |
| slimjim | alndir=PATH |
Path to orthologue alignments for those missing mapping.fas | |
© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.