SLiMSuite REST Server


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SLiMSuite Documentation

Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.

cmd: alphabet

Option Type: [?]{docs:?} LIST [X,Y,..]{docs:X,Y,..}

Modules: rje_markov rje_motiflist rje_motif_V3 rje_seq rje_slimcalc rje_slimcore rje_slimlist rje_slim presto_V5 qslimfinder slimfinder slimprob


ModuleOptionDescriptionDefault
presto_V5 alphabet=X,Y,.. List of letters in alphabet of interest AAs
qslimfinder alphabet=LIST List of characters to include in search (e.g. AAs or NTs) default AA or NT codes
rje_markov [alphabet=?]{docs:?} ?
rje_motif_V3 alphabet=LIST List of letters in alphabet of interest AAs
rje_motiflist [alphabet=?]{docs:?} ?
rje_seq alphabet=LIST Alphabet allowed in sequences standard 1 letter AA codes
rje_slim alphabet=LIST List of letters in alphabet of interest AAs
rje_slimcalc [alphabet=?]{docs:?} ?
rje_slimcore alphabet=LIST List of characters to include in search (e.g. AAs or NTs) default AA or NT codes
rje_slimlist [alphabet=?]{docs:?} ?
slimfinder alphabet=LIST List of characters to include in search (e.g. AAs or NTs) default AA or NT codes
slimprob alphabet=LIST List of characters to include in search (e.g. AAs or NTs) default AA or NT codes

© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.