SLiMSuite REST Server

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SLiMSuite Documentation

Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.

cmd: alphabet

Option Type: [?]{docs:?} LIST [X,Y,..]{docs:X,Y,..}

Modules: rje_markov rje_motiflist rje_motif_V3 rje_seq rje_slimcalc rje_slimcore rje_slimlist rje_slim presto_V5 qslimfinder slimfinder slimprob

Module	Option	Description	Default
presto_V5	`alphabet=X,Y,..`	List of letters in alphabet of interest	`AAs`
qslimfinder	`alphabet=LIST`	List of characters to include in search (e.g. AAs or NTs)	`default AA or NT codes`
rje_markov	`[alphabet=?]{docs:?}`		`?`
rje_motif_V3	`alphabet=LIST`	List of letters in alphabet of interest	`AAs`
rje_motiflist	`[alphabet=?]{docs:?}`		`?`
rje_seq	`alphabet=LIST`	Alphabet allowed in sequences	`standard 1 letter AA codes`
rje_slim	`alphabet=LIST`	List of letters in alphabet of interest	`AAs`
rje_slimcalc	`[alphabet=?]{docs:?}`		`?`
rje_slimcore	`alphabet=LIST`	List of characters to include in search (e.g. AAs or NTs)	`default AA or NT codes`
rje_slimlist	`[alphabet=?]{docs:?}`		`?`
slimfinder	`alphabet=LIST`	List of characters to include in search (e.g. AAs or NTs)	`default AA or NT codes`
slimprob	`alphabet=LIST`	List of characters to include in search (e.g. AAs or NTs)	`default AA or NT codes`

© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.