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SLiMSuite Documentation

Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.

cmd: dna

Option Type: T/F

Modules: rje_price gopher_V2 qslimfinder_V1.9 slimfinder_V4.9 rje_seqlist rje_seq rje_slimcore rje_slimlist rje_slim comparimotif_V3 fiesta gopher qslimfinder slimfinder slimmaker slimprob

ModuleOptionDescriptionDefault
comparimotif_V3 dna=T/F Whether motifs should be considered as DNA motifs False
fiesta dna=T/F Implement DNA-based GABLAM assembly True
gopher dna=T/F Whether to analyse DNA sequences (not optimised) False
gopher_V2 dna=T/F Whether to analyse DNA sequences (not optimised) False
qslimfinder dna=T/F Whether the sequences files are DNA rather than protein False
qslimfinder_V1.9 dna=T/F Whether the sequences files are DNA rather than protein False
rje_price dna=T/F Whether sequences are DNA or protein True
rje_seq dna=T/F Alternative identification of sequences as DNA False
rje_seqlist dna=T/F Alternative option to indicate dealing with nucleotide sequences False
rje_slim dna=T/F Whether motifs should be considered as DNA motifs False
rje_slimcore dna=T/F Whether the sequences files are DNA rather than protein False
rje_slimlist dna=T/F Whether motifs should be considered as DNA motifs False
slimfinder dna=T/F Whether the sequences files are DNA rather than protein False
slimfinder_V4.9 dna=T/F Whether the sequences files are DNA rather than protein False
slimmaker dna=T/F Whether "peptides" are actually DNA fragments False
slimprob dna=T/F Whether the sequences files are DNA rather than protein False
© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.