SLiMSuite REST Server

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SLiMSuite Documentation

Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.

cmd: force

Option Type: T/F

Modules: orcfinder rje_hmm_V2 rje_dbase gopher_V2 qslimfinder_V1.9 slimbench_V1 slimfinder_V4.9 slimprob_V1.4 rje_hmm_V1 rje_obj rje_slimcore rje aphid gopher multihaq qslimfinder slimbench slimfinder slimprob slimsearch smrtscape

Module	Option	Description	Default
aphid	`force=T/F`	Regenerate intermediate files even if found	`False`
gopher	`force=T/F`	Whether to force execution at current level even if results are new enough	`False`
gopher_V2	`force=T/F`	Whether to force execution at current level even if results are new enough	`False`
multihaq	`force=T/F`	Whether to force re-running of stages (True) or pick-up pre-existing runs (False)	`False`
orcfinder	`force=T/F`	Force re-running of BLAST, UPC generation and SLiMBuild	`False`
qslimfinder	`force=T/F`	Force re-running of BLAST, UPC generation and SLiMBuild	`False`
qslimfinder_V1.9	`force=T/F`	Force re-running of BLAST, UPC generation and SLiMBuild	`False`
rje	`force=T/F`	Force to regenerate data rather than keep old results	`False`
rje_dbase	`force=T/F`	Whether to force regeneration of existing files	`False`
rje_hmm_V1	`force=T/F`	Whether to force regeneration of new HMMer results if already existing	`False`
rje_hmm_V2	`force=T/F`	Whether to force regeneration of new HMMer results if already existing	`False`
rje_obj	`force=T/F`	Force to regenerate data rather than keep old results	`False`
rje_slimcore	`force=T/F`	Force re-running of BLAST, UPC generation and SLiMBuild	`False`
slimbench	`force=T/F`	Whether to force regeneration of outputs (True) or assume existing outputs are right	`False`
slimbench_V1	`force=T/F`	Whether to force regeneration of outputs (True) or assume existing outputs are right	`False`
slimfinder	`force=T/F`	Force re-running of BLAST, UPC generation and SLiMBuild	`False`
slimfinder_V4.9	`force=T/F`	Force re-running of BLAST, UPC generation and SLiMBuild	`False`
slimprob	`force=T/F`	Force re-running of BLAST, UPC generation and search	`False`
slimprob_V1.4	`force=T/F`	Force re-running of BLAST, UPC generation and search	`False`
slimsearch	`force=T/F`	Force re-running of BLAST, UPC generation and search	`False`
smrtscape	`force=T/F`	[Adv.] Whether to force regeneration of existing data, except `unique` and `zmw` tables	`False`