SLiMSuite REST Server


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SLiMSuite Documentation

Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.

cmd: force

Option Type: T/F

Modules: orcfinder rje_hmm_V2 rje_dbase gopher_V2 qslimfinder_V1.9 slimbench_V1 slimfinder_V4.9 slimprob_V1.4 rje_hmm_V1 rje_obj rje_slimcore rje aphid gopher multihaq qslimfinder slimbench slimfinder slimprob slimsearch


ModuleOptionDescriptionDefault
aphid force=T/F Regenerate intermediate files even if found False
gopher force=T/F Whether to force execution at current level even if results are new enough False
gopher_V2 force=T/F Whether to force execution at current level even if results are new enough False
multihaq force=T/F Whether to force re-running of stages (True) or pick-up pre-existing runs (False) False
orcfinder force=T/F Force re-running of BLAST, UPC generation and SLiMBuild False
qslimfinder force=T/F Force re-running of BLAST, UPC generation and SLiMBuild False
qslimfinder_V1.9 force=T/F Force re-running of BLAST, UPC generation and SLiMBuild False
rje force=T/F Force to regenerate data rather than keep old results False
rje_dbase force=T/F Whether to force regeneration of existing files False
rje_hmm_V1 force=T/F Whether to force regeneration of new HMMer results if already existing False
rje_hmm_V2 force=T/F Whether to force regeneration of new HMMer results if already existing False
rje_obj force=T/F Force to regenerate data rather than keep old results False
rje_slimcore force=T/F Force re-running of BLAST, UPC generation and SLiMBuild False
slimbench force=T/F Whether to force regeneration of outputs (True) or assume existing outputs are right False
slimbench_V1 force=T/F Whether to force regeneration of outputs (True) or assume existing outputs are right False
slimfinder force=T/F Force re-running of BLAST, UPC generation and SLiMBuild False
slimfinder_V4.9 force=T/F Force re-running of BLAST, UPC generation and SLiMBuild False
slimprob force=T/F Force re-running of BLAST, UPC generation and search False
slimprob_V1.4 force=T/F Force re-running of BLAST, UPC generation and search False
slimsearch force=T/F Force re-running of BLAST, UPC generation and search False

© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.