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SLiMSuite Documentation
Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.
cmd: homcut
Option Type: [?]{docs:?} X
Modules: orcfinder qslimfinder_V1.9 slimfinder_V4.9 slimprob_V1.4 rje_slimcore qslimfinder slimfinder slimprob slimsearch
| Module | Option | Description | Default |
|---|---|---|---|
| orcfinder | homcut=X |
Max number of homologues to allow (to reduce large multi-domain families) | 200 |
| qslimfinder | homcut=X |
Max number of homologues to allow (to reduce large multi-domain families) | 0 |
| qslimfinder_V1.9 | homcut=X |
Max number of homologues to allow (to reduce large multi-domain families) | 0 |
| rje_slimcore | homcut=X |
Max number of homologues to allow (to reduce large multi-domain families) | 0 |
| slimfinder | homcut=X |
Max number of homologues to allow (to reduce large multi-domain families) | 0 |
| slimfinder_V4.9 | homcut=X |
Max number of homologues to allow (to reduce large multi-domain families) | 0 |
| slimprob | [homcut=?]{docs:?} |
? |
|
| slimprob_V1.4 | [homcut=?]{docs:?} |
? |
|
| slimsearch | [homcut=?]{docs:?} |
? |
© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.