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SLiMSuite Documentation
Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.
cmd: masking
Option Type: T/F
Modules: qslimfinder_V1.9 slimbench_V1 slimfinder_V4.9 slimprob_V1.4 rje_slimcalc rje_slimcore qslimfinder slimbench slimfinder slimprob slimsearch
| Module | Option | Description | Default |
|---|---|---|---|
| qslimfinder | masking=T/F |
Master control switch to turn off all masking if False | True |
| qslimfinder_V1.9 | masking=T/F |
Master control switch to turn off all masking if False | True |
| rje_slimcalc | masking=T/F |
Whether to use seq.info['MaskSeq'] for Prob cons, if present (else 'Sequence') | True |
| rje_slimcore | masking=T/F |
Master control switch to turn off all masking if False | True |
| slimbench | masking=T/F |
Whether to use SLiMCore masking for query selection | True |
| slimbench_V1 | masking=T/F |
Whether to use SLiMCore masking for query selection | True |
| slimfinder | masking=T/F |
Master control switch to turn off all masking if False | True |
| slimfinder_V4.9 | masking=T/F |
Master control switch to turn off all masking if False | True |
| slimprob | masking=T/F |
Master control switch to turn off all masking if False | False |
| slimprob_V1.4 | masking=T/F |
Master control switch to turn off all masking if False | False |
| slimsearch | masking=T/F |
Master control switch to turn off all masking if False | False |
© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.