SLiMSuite REST Server


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SLiMSuite Documentation

Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.

cmd: memsaver

Option Type: T/F

Modules: rje_embl rje_mysql rje_pattern_discovery rje_motiflist rje_obj rje_seq rje_uniprot rje comparimotif_V3 presto_V5


ModuleOptionDescriptionDefault
comparimotif_V3 memsaver=T/F Run in more efficient memory saver mode. XGMML output not available. False
presto_V5 memsaver=T/F Whether to store all results in Objects (False) or clear as search proceeds (True) True
rje memsaver=T/F Some modules will have a memsaver option to save memory usage False
rje_embl memsaver=T/F Memsaver option to save memory usage - does not retain entries in object False
rje_motiflist memsaver=T/F Whether to store all results in Objects (False) or clear as search proceeds (True) True
rje_mysql memsaver=T/F Will not check for Unique fields if True. False
rje_obj memsaver=T/F Some modules will have a memsaver option to save memory usage False
rje_pattern_discovery memsaver=T/F Whether to run SLiMDisc in memory_saver mode (-X T) True
rje_seq memsaver=T/F Minimise memory usage. Input sequences must be fasta. False
rje_uniprot memsaver=T/F Memsaver option to save memory usage - does not retain entries in UniProt object False

© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.