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SLiMSuite Documentation
Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.
cmd: memsaver
Option Type: T/F
Modules: rje_embl rje_mysql rje_pattern_discovery rje_motiflist rje_obj rje_seq rje_uniprot rje comparimotif_V3 presto_V5
| Module | Option | Description | Default |
|---|---|---|---|
| comparimotif_V3 | memsaver=T/F |
Run in more efficient memory saver mode. XGMML output not available. | False |
| presto_V5 | memsaver=T/F |
Whether to store all results in Objects (False) or clear as search proceeds (True) | True |
| rje | memsaver=T/F |
Some modules will have a memsaver option to save memory usage | False |
| rje_embl | memsaver=T/F |
Memsaver option to save memory usage - does not retain entries in object | False |
| rje_motiflist | memsaver=T/F |
Whether to store all results in Objects (False) or clear as search proceeds (True) | True |
| rje_mysql | memsaver=T/F |
Will not check for Unique fields if True. | False |
| rje_obj | memsaver=T/F |
Some modules will have a memsaver option to save memory usage | False |
| rje_pattern_discovery | memsaver=T/F |
Whether to run SLiMDisc in memory_saver mode (-X T) | True |
| rje_seq | memsaver=T/F |
Minimise memory usage. Input sequences must be fasta. | False |
| rje_uniprot | memsaver=T/F |
Memsaver option to save memory usage - does not retain entries in UniProt object | False |
© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.