SLiMSuite REST Server


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SLiMSuite Documentation

Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.

cmd: mincut

Option Type: X

Modules: samphaser rje_samtools


ModuleOptionDescriptionDefault
rje_samtools mincut=X Minimum read count for minor allele (proportion if <1) 1
samphaser mincut=X Minimum read count for minor allele (proportion of QN if <1) for pileup parsing 0.1

© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.