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SLiMSuite Documentation
Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.
cmd: minic
Option Type: X
Modules: qslimfinder_V1.9 slimbench_V1 slimfinder_V4.9 rje_motiflist rje_slimlist comparimotif_V3 presto_V5 qslimfinder slimbench slimfinder
| Module | Option | Description | Default |
|---|---|---|---|
| comparimotif_V3 | minic=X |
Min information content for a motif (1 fixed position = 1.0) | 2.0 |
| presto_V5 | minic=X |
Min information content for a motif (1 fixed position = 1.0) | 2.0 |
| qslimfinder | minic=X |
Minimum information content for returned motifs | 2.1 |
| qslimfinder_V1.9 | minic=X |
Minimum information content for returned motifs | 2.1 |
| rje_motiflist | minic=X |
Min information content for a motif (1 fixed position = 1.0) | 2.0 |
| rje_slimlist | minic=X |
Min information content for a motif (1 fixed position = 1.0) | 0.0 |
| slimbench | minic=X |
Min information content for a motif (1 fixed position = 1.0) | 2.0; 1.1 for OccBench |
| slimbench_V1 | minic=X |
Min information content for a motif (1 fixed position = 1.0) | 2.0 |
| slimfinder | minic=X |
Minimum information content for returned motifs | 2.1 |
| slimfinder_V4.9 | minic=X |
Minimum information content for returned motifs | 2.1 |
© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.