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SLiMSuite Documentation
Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.
cmd: minocc
Option Type: X
Modules: rje_slimfungo slimgoer qslimfinder_V1.9 slimfinder_V4.9 qslimfinder slimfinder
| Module | Option | Description | Default |
|---|---|---|---|
| qslimfinder | minocc=X |
Minimum number of unrelated occurrences for returned SLiMs. (Proportion of UP if < 1) | 0.05 |
| qslimfinder_V1.9 | minocc=X |
Minimum number of unrelated occurrences for returned SLiMs. (Proportion of UP if < 1) | 0.05 |
| rje_slimfungo | minocc=X |
Min occurrences for a motif in a GO category | 6 |
| slimfinder | minocc=X |
Minimum number of unrelated occurrences for returned SLiMs. (Proportion of UP if < 1) | 0.05 |
| slimfinder_V4.9 | minocc=X |
Minimum number of unrelated occurrences for returned SLiMs. (Proportion of UP if < 1) | 0.05 |
| slimgoer | minocc=X |
Minimum number of occurrences for a given Motif/GO combo | 5 |
© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.