SLiMSuite REST Server


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SLiMSuite Documentation

Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.

cmd: minocc

Option Type: X

Modules: rje_slimfungo slimgoer qslimfinder_V1.9 slimfinder_V4.9 qslimfinder slimfinder


ModuleOptionDescriptionDefault
qslimfinder minocc=X Minimum number of unrelated occurrences for returned SLiMs. (Proportion of UP if < 1) 0.05
qslimfinder_V1.9 minocc=X Minimum number of unrelated occurrences for returned SLiMs. (Proportion of UP if < 1) 0.05
rje_slimfungo minocc=X Min occurrences for a motif in a GO category 6
slimfinder minocc=X Minimum number of unrelated occurrences for returned SLiMs. (Proportion of UP if < 1) 0.05
slimfinder_V4.9 minocc=X Minimum number of unrelated occurrences for returned SLiMs. (Proportion of UP if < 1) 0.05
slimgoer minocc=X Minimum number of occurrences for a given Motif/GO combo 5

© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.