SLiMSuite REST Server

SLiMSuite Documentation

Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.

Option Type: X

Modules: extatic patis rje_seqlist rje_seq budapest fiesta

Module	Option	Description	Default
budapest	`minorf=X`	Min length of ORFs to be considered	`10`
extatic	`minorf=X`	Minimum ORF lengths to be considered	`0`
fiesta	`minorf=X`	Min length of ORFs to be considered	`20`
patis	`minorf=X`	Min length of extended ORF	`20`
rje_seq	`minorf=X`	Minimum ORF length for a DNA/EST translation (reformatting only)	`0`
rje_seqlist	`minorf=X`	Min. ORF length for translated sequences output. -1 for single translation inc stop codons	`-1`