SLiMSuite REST Server


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SLiMSuite Documentation

Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.

cmd: minorf

Option Type: X

Modules: extatic patis rje_seqlist rje_seq budapest fiesta


ModuleOptionDescriptionDefault
budapest minorf=X Min length of ORFs to be considered 10
extatic minorf=X Minimum ORF lengths to be considered 0
fiesta minorf=X Min length of ORFs to be considered 20
patis minorf=X Min length of extended ORF 20
rje_seq minorf=X Minimum ORF length for a DNA/EST translation (reformatting only) 0
rje_seqlist minorf=X Min. ORF length for translated sequences output. -1 for single translation inc stop codons -1

© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.