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SLiMSuite Documentation
Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.
cmd: motifs
Modules: bob slimdip slimjim slimprob_V1.4 rje_motiflist rje_slimlist comparimotif_V3 presto_V5 slimmutant slimprob slimsearch
| Module | Option | Description | Default |
|---|---|---|---|
| bob | motifs=FILE |
File of motifs for selected analysis | |
| comparimotif_V3 | motifs=FILE |
File of input motifs/peptides | None |
| presto_V5 | motifs=FILE |
File of input motifs/peptides | None |
| rje_motiflist | motifs=FILE |
File of input motifs/peptides | None |
| rje_slimlist | motifs=FILE |
File of input motifs/peptides | None |
| slimdip | motifs=FILE |
File containing the SLiMs to analyse. (Required.) "ELM" will create/use ELM download. | ELM |
| slimjim | motifs=T/F |
Whether to generate output for Motifs | True |
| slimmutant | motifs=FILE |
Input file of SLiMs | |
| slimprob | motifs=FILE |
File of input motifs/peptides (also motif=X) | None |
| slimprob_V1.4 | motifs=FILE |
File of input motifs/peptides | None |
| slimsearch | motifs=FILE |
File of input motifs/peptides | None |
© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.