SLiMSuite REST Server


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SLiMSuite Documentation

Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.

cmd: motifs

Option Type: FILE T/F

Modules: bob slimjim slimprob_V1.4 rje_motiflist rje_slimlist comparimotif_V3 presto_V5 slimmutant slimprob slimsearch


ModuleOptionDescriptionDefault
bob motifs=FILE File of motifs for selected analysis
comparimotif_V3 motifs=FILE File of input motifs/peptides None
presto_V5 motifs=FILE File of input motifs/peptides None
rje_motiflist motifs=FILE File of input motifs/peptides None
rje_slimlist motifs=FILE File of input motifs/peptides None
slimjim motifs=T/F Whether to generate output for Motifs True
slimmutant motifs=FILE Input file of SLiMs
slimprob motifs=FILE File of input motifs/peptides (also motif=X) None
slimprob_V1.4 motifs=FILE File of input motifs/peptides None
slimsearch motifs=FILE File of input motifs/peptides None

© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.