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SLiMSuite Documentation
Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.
cmd: peptides
Option Type: [?]{docs:?} FILE LIST T/F
Modules: prodigis rje_seqgen slim_pickings rje_slimlist peptcluster presto_V5 slimmaker
| Module | Option | Description | Default |
|---|---|---|---|
| peptcluster | peptides=LIST |
These can be entered as a list or file. Lines following '#' or '>' ignored | peptides.txt |
| presto_V5 | peptides=T/F |
Peptide design mode, using winsize=X to set size of peptides around motif | False |
| prodigis | peptides=FILE |
File containing list of identified peptides | None |
| rje_seqgen | peptides=LIST |
Alternative peptide sequence input for scrambling | |
| rje_slimlist | peptides=T/F |
Whether to output peptide sequences based on motif and winsize | False |
| slim_pickings | peptides=T/F |
Peptide design around discovered motifs | False |
| slimmaker | [peptides=?]{docs:?} |
? |
© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.