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SLiMSuite Documentation
Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.
cmd: preassembly
Modules: trex smrtscape_V1 smrtscape
| Module | Option | Description | Default |
|---|---|---|---|
| smrtscape | preassembly=FILE |
Preassembly fasta file for which to assess/correct over-fragmentation | None |
| smrtscape_V1 | preassembly=FILE |
Preassembly fasta file to assess/correct over-fragmentation (use seqin=FILE for subreads) | None |
| trex | preassembly=FASFILE |
Fasta file of preassembly reads | |
© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.