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SLiMSuite Documentation
Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.
cmd: refgenome
Option Type: [?]{docs:?} FILE
Modules: rje_synteny pagsat_V1 pagsat snapper
| Module | Option | Description | Default |
|---|---|---|---|
| pagsat | refgenome=FILE |
Fasta file of reference genome for assessment (also *.gb for full functionality) | None |
| pagsat_V1 | refgenome=FILE |
Fasta file of reference genome for assessment (also *.gb for full functionality) | None |
| rje_synteny | refgenome=FILE |
Fasta/Genbank file of reference genome for assessment (also *.gb for full functionality) | None |
| snapper | [refgenome=?]{docs:?} |
? |
© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.