SLiMSuite REST Server


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SLiMSuite Documentation

Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.

cmd: resfile

Option Type: [?]{docs:?} FILE LIST

Modules: orcfinder rje_price slimgoer slimjim qslimfinder_V1.9 slimfinder_V4.9 slimprob_V1.4 rje_forker rje_iridis comparimotif_V3 presto_V5 qslimfinder seqmapper slimfarmer slimfinder slimmutant slimprob slimsearch


ModuleOptionDescriptionDefault
comparimotif_V3 resfile=FILE Name of results file, FILE.compare.tdt. motifsFILE-searchdbFILE.compare.tdt
orcfinder resfile=FILE Main SLiMFinder results table slimfinder.csv
presto_V5 [resfile=?]{docs:?} ?
qslimfinder resfile=FILE Main QSLiMFinder results table qslimfinder.csv
qslimfinder_V1.9 resfile=FILE Main QSLiMFinder results table qslimfinder.csv
rje_forker resfile=LIST List of results files (BASEFILE.X) that will need transferring
rje_iridis resfile=FILE Main output file for iX run islimfinder.csv
rje_price resfile=FILE Results file price.tdt
seqmapper resfile=FILE Base of output filenames (*.mapped.fas, *.missing.fas & *.mapping.tdt) seqin.mapdb
slimfarmer resfile=FILE Main output file for SLiMSuite run `farm`.csv
slimfinder resfile=FILE Main SLiMFinder results table slimfinder.csv
slimfinder_V4.9 resfile=FILE Main SLiMFinder results table slimfinder.csv
slimgoer resfile=FILE Basefile for SLiMSearch results CSV files
slimjim resfile=FILE Main SLiMFinder results file
slimmutant resfile=FILE Main SLiMProb results table (*.csv and *.occ.csv) slimprob.csv
slimprob resfile=FILE Main SLiMProb results table (*.csv and *.occ.csv) slimprob.csv
slimprob_V1.4 resfile=FILE Main SLiMProb results table (*.csv and *.occ.csv) slimprob.csv
slimsearch resfile=FILE Main SLiMSearch results table slimsearch.csv

© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.