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SLiMSuite Documentation
Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.
cmd: resfile
Option Type: [?]{docs:?} FILE LIST
Modules: orcfinder rje_price slimgoer slimjim qslimfinder_V1.9 slimfinder_V4.9 slimprob_V1.4 rje_forker rje_iridis comparimotif_V3 presto_V5 qslimfinder seqmapper slimfarmer slimfinder slimmutant slimprob slimsearch
| Module | Option | Description | Default |
|---|---|---|---|
| comparimotif_V3 | resfile=FILE |
Name of results file, FILE.compare.tdt. | motifsFILE-searchdbFILE.compare.tdt |
| orcfinder | resfile=FILE |
Main SLiMFinder results table | slimfinder.csv |
| presto_V5 | [resfile=?]{docs:?} |
? |
|
| qslimfinder | resfile=FILE |
Main QSLiMFinder results table | qslimfinder.csv |
| qslimfinder_V1.9 | resfile=FILE |
Main QSLiMFinder results table | qslimfinder.csv |
| rje_forker | resfile=LIST |
List of results files (BASEFILE.X) that will need transferring | |
| rje_iridis | resfile=FILE |
Main output file for iX run | islimfinder.csv |
| rje_price | resfile=FILE |
Results file | price.tdt |
| seqmapper | resfile=FILE |
Base of output filenames (*.mapped.fas, *.missing.fas & *.mapping.tdt) | seqin.mapdb |
| slimfarmer | resfile=FILE |
Main output file for SLiMSuite run | `farm`.csv |
| slimfinder | resfile=FILE |
Main SLiMFinder results table | slimfinder.csv |
| slimfinder_V4.9 | resfile=FILE |
Main SLiMFinder results table | slimfinder.csv |
| slimgoer | resfile=FILE |
Basefile for SLiMSearch results CSV files | |
| slimjim | resfile=FILE |
Main SLiMFinder results file | |
| slimmutant | resfile=FILE |
Main SLiMProb results table (*.csv and *.occ.csv) | slimprob.csv |
| slimprob | resfile=FILE |
Main SLiMProb results table (*.csv and *.occ.csv) | slimprob.csv |
| slimprob_V1.4 | resfile=FILE |
Main SLiMProb results table (*.csv and *.occ.csv) | slimprob.csv |
| slimsearch | resfile=FILE |
Main SLiMSearch results table | slimsearch.csv |
© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.