|
SLiMSuite REST Server |
| Links |
|---|
| REST Home |
| EdwardsLab Homepage |
| EdwardsLab Blog |
| SLiMSuite Blog |
| SLiMSuite |
| Webservers |
| Genomes |
| REST Pages |
| REST Status |
| REST Help |
| REST Tools |
| REST Alias Data |
| REST API |
| REST News |
| REST Sitemap |
SLiMSuite Documentation
Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.
cmd: searchdb
Option Type: FILE
Modules: revert rje_hmm_V2 rje_hmm_V1 budapest comparimotif_V3 fiesta gablam presto_V5
| Module | Option | Description | Default |
|---|---|---|---|
| budapest | searchdb=FILE |
Fasta file for GABLAM search of EST translations | None |
| comparimotif_V3 | searchdb=FILE |
(Optional) second motif file to compare. Will compare to self if none given. | None |
| fiesta | searchdb=FILE |
Fasta file for GABLAM search of EST translations | None |
| gablam | searchdb=FILE |
Database to search. | By default, same as seqin |
| presto_V5 | searchdb=FILE |
Protein Fasta file to search (or second motif file to compare) | None |
| revert | searchdb=FILE |
Fasta file of viral (& host?) proteins for assembly annotation. Use viral proteins if None. | |
| rje_hmm_V1 | searchdb=FILE |
Fasta file to search with HMMs | None |
| rje_hmm_V2 | searchdb=FILE |
Fasta file to search with HMMs | None |
© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.