|
SLiMSuite REST Server |
| Links |
|---|
| REST Home |
| EdwardsLab Homepage |
| EdwardsLab Blog |
| SLiMSuite Blog |
| SLiMSuite |
| Webservers |
| Genomes |
| REST Pages |
| REST Status |
| REST Help |
| REST Tools |
| REST Alias Data |
| REST API |
| REST News |
| REST Sitemap |
SLiMSuite Documentation
Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.
cmd: seqocc
Modules: qslimfinder_V1.9 slimfinder_V4.9 slimprob_V1.4 qslimfinder slimfinder slimprob slimsearch
| Module | Option | Description | Default |
|---|---|---|---|
| qslimfinder | seqocc=T/F |
Whether to upweight for multiple occurrences in same sequence (heuristic) | False |
| qslimfinder_V1.9 | seqocc=T/F |
Whether to upweight for multiple occurrences in same sequence (heuristic) | False |
| slimfinder | seqocc=T/F |
Whether to upweight for multiple occurrences in same sequence (heuristic) | False |
| slimfinder_V4.9 | seqocc=T/F |
Whether to upweight for multiple occurrences in same sequence (heuristic) | False |
| slimprob | seqocc=X |
Restrict to sequences with X+ occurrences (adjust for high frequency SLiMs) | 1 |
| slimprob_V1.4 | seqocc=X |
Restrict to sequences with X+ occurrences (adjust for high frequency SLiMs) | 1 |
| slimsearch | seqocc=X |
Restrict to sequences with X+ occurrences (adjust for high frequency SLiMs) | 1 |
© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.