SLiMSuite REST Server


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SLiMSuite Documentation

Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.

cmd: seqocc

Option Type: T/F X

Modules: qslimfinder_V1.9 slimfinder_V4.9 slimprob_V1.4 qslimfinder slimfinder slimprob slimsearch


ModuleOptionDescriptionDefault
qslimfinder seqocc=T/F Whether to upweight for multiple occurrences in same sequence (heuristic) False
qslimfinder_V1.9 seqocc=T/F Whether to upweight for multiple occurrences in same sequence (heuristic) False
slimfinder seqocc=T/F Whether to upweight for multiple occurrences in same sequence (heuristic) False
slimfinder_V4.9 seqocc=T/F Whether to upweight for multiple occurrences in same sequence (heuristic) False
slimprob seqocc=X Restrict to sequences with X+ occurrences (adjust for high frequency SLiMs) 1
slimprob_V1.4 seqocc=X Restrict to sequences with X+ occurrences (adjust for high frequency SLiMs) 1
slimsearch seqocc=X Restrict to sequences with X+ occurrences (adjust for high frequency SLiMs) 1

© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.