SLiMSuite REST Server


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SLiMSuite Documentation

Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.

cmd: snapper

Option Type: T/F

Modules: pagsat_V1 pagsat


ModuleOptionDescriptionDefault
pagsat snapper=T/F Run Snapper to generate "best" unique mapping of assembly contigs to Reference True
pagsat_V1 snapper=T/F Run Snapper on ctidX/haploid output following PAGSAT Tidy. (Re-Quiver recommended first.) False

© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.