SLiMSuite REST Server


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SLiMSuite Documentation

Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.

cmd: teiresias

Option Type: T/F X

Modules: rje_pattern_discovery rje_seqgen qslimfinder_V1.9 slimfinder_V4.9 qslimfinder slimfinder


ModuleOptionDescriptionDefault
qslimfinder teiresias=T/F Replace TEIRESIAS, making *.out and *.mask.fasta files False
qslimfinder_V1.9 teiresias=T/F Replace TEIRESIAS, making *.out and *.mask.fasta files False
rje_pattern_discovery teiresias=T/F Whether to perform TEIRESIAS search on seqin=FILE True
rje_seqgen teiresias=X Length of patterns to be screened by additional TEIRESIAS search on scrambled vs original 0
slimfinder teiresias=T/F Replace TEIRESIAS, making *.out and *.mask.fasta files False
slimfinder_V4.9 teiresias=T/F Replace TEIRESIAS, making *.out and *.mask.fasta files False

© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.