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SLiMSuite Documentation
Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.
cmd: teiresias
Modules: rje_pattern_discovery rje_seqgen qslimfinder_V1.9 slimfinder_V4.9 qslimfinder slimfinder
| Module | Option | Description | Default |
|---|---|---|---|
| qslimfinder | teiresias=T/F |
Replace TEIRESIAS, making *.out and *.mask.fasta files | False |
| qslimfinder_V1.9 | teiresias=T/F |
Replace TEIRESIAS, making *.out and *.mask.fasta files | False |
| rje_pattern_discovery | teiresias=T/F |
Whether to perform TEIRESIAS search on seqin=FILE | True |
| rje_seqgen | teiresias=X |
Length of patterns to be screened by additional TEIRESIAS search on scrambled vs original | 0 |
| slimfinder | teiresias=T/F |
Replace TEIRESIAS, making *.out and *.mask.fasta files | False |
| slimfinder_V4.9 | teiresias=T/F |
Replace TEIRESIAS, making *.out and *.mask.fasta files | False |
© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.