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SLiMSuite Documentation
Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.
cmd: unipath
Option Type: PATH
Modules: rje_hm_html slimjim rje_dbase rje_biogrid rje_ensembl rje_slimhtml rje_uniprot pingu_V3 slimbench
| Module | Option | Description | Default |
|---|---|---|---|
| pingu_V3 | unipath=PATH |
Path to UniProt files | UniProt/ |
| rje_biogrid | unipath=PATH |
Path to UniProt files | UniProt/ |
| rje_dbase | unipath=PATH |
Path to UniProt files | UniProt/ |
| rje_ensembl | unipath=PATH |
Path to UniProt files | enspath=PATH/uniprot/ |
| rje_hm_html | unipath=PATH |
Path to real UniProt dat file(s) | ./uniprot/ |
| rje_slimhtml | unipath=PATH |
Path to real UniProt dat file(s) | ./uniprot/ |
| rje_uniprot | unipath=PATH |
Path to UniProt Datafile (looks here for DB Index file; url = use Web downloads) | url |
| slimbench | unipath=PATH |
Path to UniProt download. Will query website if "URL" | URL |
| slimjim | unipath=PATH |
Path to indexed real UniProt DAT files | |
© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.