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Option Type: INT
Argument: genomesize maxlen minlength [`genomesize]{cmd:`genomesize} [`targetxcov]{cmd:`targetxcov}
Modules: diploidocus trex slimmaker smrtscape
| Module | Option | Description | Default |
|---|---|---|---|
| diploidocus | genomesize=INT |
Haploid genome size (bp) | 13.1e6 |
| slimmaker | maxlen=INT |
Maximum length for peptide | 50 |
| smrtscape | [`genomesize=INT`]{cmd:`genomesize} |
Genome size (bp) | 0 |
| smrtscape | [`targetxcov=INT`]{cmd:`targetxcov} |
Target 100% X Coverage for pre-assembly (e.g. error-corrected seed reads) | 3 |
| smrtscape | genomesize=INT |
Genome size (bp) | 0 |
| trex | minlength=INT |
Minimum length of a fragment (local BLAST hit) worthy of consideration | 250 |
© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.