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Option Type: INT

Argument: genomesize maxlen minlength [`genomesize]{cmd:`genomesize} [`targetxcov]{cmd:`targetxcov}

Modules: diploidocus trex slimmaker smrtscape

ModuleOptionDescriptionDefault
diploidocus genomesize=INT Haploid genome size (bp) 13.1e6
slimmaker maxlen=INT Maximum length for peptide 50
smrtscape [`genomesize=INT`]{cmd:`genomesize} Genome size (bp) 0
smrtscape [`targetxcov=INT`]{cmd:`targetxcov} Target 100% X Coverage for pre-assembly (e.g. error-corrected seed reads) 3
smrtscape genomesize=INT Genome size (bp) 0
trex minlength=INT Minimum length of a fragment (local BLAST hit) worthy of consideration 250

© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.