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Option Type: PERC
Argument: localidcut localidmin minid targetcov [`targetcov]{cmd:`targetcov}
Modules: trex rje_blast_V2 gablam smrtscape snapper
| Module | Option | Description | Default |
|---|---|---|---|
| gablam | localidcut=PERC |
Cut-off local %identity for local alignments contributing to global GABLAM stats | 0.0 |
| gablam | localidmin=PERC |
Minimum local %identity of local alignment to output to local stats table | 0.0 |
| rje_blast_V2 | localidcut=PERC |
Cut-off local %identity for local alignments contributing to global GABLAM stats | 0.0 |
| smrtscape | [`targetcov=PERC`]{cmd:`targetcov} |
Target percentage coverage for final genome | 99.999 |
| smrtscape | targetcov=PERC |
Target percentage coverage for final genome | 99.999 |
| snapper | localidmin=PERC |
Minimum local %identity of local alignment to output to local stats table | 0.0 |
| trex | minid=PERC |
Minimum %identity of a fragment (local BLAST hit) worthy of consideration | 60.0 |
© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.