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Option Type: PERC

Argument: localidcut localidmin minid targetcov [`targetcov]{cmd:`targetcov}

Modules: trex rje_blast_V2 gablam smrtscape snapper

ModuleOptionDescriptionDefault
gablam localidcut=PERC Cut-off local %identity for local alignments contributing to global GABLAM stats 0.0
gablam localidmin=PERC Minimum local %identity of local alignment to output to local stats table 0.0
rje_blast_V2 localidcut=PERC Cut-off local %identity for local alignments contributing to global GABLAM stats 0.0
smrtscape [`targetcov=PERC`]{cmd:`targetcov} Target percentage coverage for final genome 99.999
smrtscape targetcov=PERC Target percentage coverage for final genome 99.999
snapper localidmin=PERC Minimum local %identity of local alignment to output to local stats table 0.0
trex minid=PERC Minimum %identity of a fragment (local BLAST hit) worthy of consideration 60.0

© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.