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Option Type: SEQFILE

Argument: candidates negatives seqin

Modules: prothunter slimfinder slimprob

Sequence input files. Could be a FASFILE or Uniprot DATFILE.

ModuleOptionDescriptionDefault
prothunter candidates=SEQFILE File containing candidate protein sequences to go hunting for
slimfinder negatives=SEQFILE Multiply raw probabilities by under-representation in FILE (!!!Experimental!!!) None
slimfinder seqin=SEQFILE Sequence file to search. Over-rules batch=FILE and uniprotid=LIST None
slimprob seqin=SEQFILE Sequence file to search. Over-rules batch=FILE and uniprotid=LIST None

© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.