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Option Type: boolorfile

Argument: datout edit ftout pfamout tabout xrefout

Modules: rje_seqlist rje_uniprot

ModuleOptionDescriptionDefault
rje_seqlist edit=T/F/FILE Enter sequence edit mode upon loading (will switch seqmode=list) (see above) False
rje_uniprot datout=T/F/FILE Name of new (reduced) UniProt DAT file of extracted sequences None
rje_uniprot ftout=T/F/FILE Outputs table of features into FILE None
rje_uniprot pfamout=T/F/FILE Whether to output a "long" table of (accnum, pfam, name, num) False
rje_uniprot tabout=T/F/FILE Table of extracted UniProt details None
rje_uniprot xrefout=T/F/FILE Table of extracted Database xref (Formerly linkout=FILE) None

© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.