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SLiMSuite V1.4.1

Short Linear Motif analysis Suite

Module: SLiMSuite
Description: Short Linear Motif analysis Suite
Version: 1.4.1
Last Edit: 05/07/18
Citation: Please see individual programs or SLiMSuite blog for citation details.
DOI: 10.5281/zenodo.1302990
Homepage: https://github.com/slimsuite/SLiMSuite
Blog: https://slimsuite.blogspot.com/

Copyright © 2018 Richard J. Edwards - See source code for GNU License Notice


Imported modules: rje slimsuite seqsuite


See SLiMSuite Blog for further documentation. See rje for general commands.

Function

This module acts as a wrapper for [tools/slimsuite.py]{module:tools/slimsuite}. Please see the SLiMSuite and SeqSuite documentation (or run with help=T) to get a list of tools & utilities.

Commandline


prog=X # Identifies the tool to be used. Will load defaults from X.ini (before slimsuite.ini) [help]
help=T/F # Return the help documentation for program X. [False]


See also https

History Module Version History

    # 1.4.0 - SLiMSuite v1.4.0 (2018-07-02) release. Added this top level file to track overall version number.
    # 1.4.1 - SLiMBench v2.18.3 - Added better handling of motifs without TP occurrences for OccBench. Added minocctp=INT.

© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.