Module: GATIC Description: Genomic Analysis of Translation Initiation Codons Version: 0.0 Last Edit: 14/04/12

Copyright © 2011 Richard J. Edwards - See source code for GNU License Notice

Imported modules: rje rje_db rje_obj rje_seq rje_seqlist rje_sequence rje_zen

See SLiMSuite Blog for further documentation. See rje for general commands.

Function

The function of this module will be added here. Check out: http://www.pnas.org/content/97/4/1536.full Check out: http://www.pnas.org/content/101/26/9590.long (CCGGCGGGU) Check out: http://www.nature.com/emboj/journal/v27/n11/full/emboj200890a.html

Commandline

Input options

species=X : Species for analysis [HUMAN]
flanks=X : Length of flanks for profile analysis etc. [20]

General Setup

enspath=PATH : Path to Ensembl files [./]

See also rje.py generic commandline options.

History Module Version History

    # 0.0 - Initial Compilation.