Disorder Prediction Module
Copyright © 2006 Richard J. Edwards - See source code for GNU License Notice
This module currently has limited function and no standalone capability, though this may be added with time. It is designed for use with other modules. The disorder Class can be given a sequence and will run the appropriate disorder prediction software and store disorder prediction results for use in other programs. The sequence will have any gaps removed.
Currently four disorder prediction methods are implemented:
For IUPred, the individual residue results are stored in Disorder.list['ResidueDisorder']. For both methods, the disordered regions are stored in Disorder.list['RegionDisorder'] as (start,stop) tuples.
V1.2.0 introduced the optional use of IUScoreDir/ to save and/or (re)load lists of disorder scores. These are files
named <ACC>.<DISORDER>.txt where <ACC> is the accession number of the protein. If
### General Options ###
History Module Version History
# 0.0 - Initial Compilation. # 0.1 - Added parsing of disorder from name as an option instead of disorder prediction # 0.2 - Added Folded tuple as well as disordered # 0.3 - Added PrintLog opt attribute # 0.4 - Added option for correct use of IUPred_PATH environment variable # 0.5 - Added Minimum length of an ordered/disordered region # 0.6 - Added ANCHOR prediction. # 0.7 - Added globProportion calculation. # 0.8 - Added makeRegions() method. # 1.0.0 - Added random disorder function and elevated to v1.x as fully functional for SLiMSuite # 1.1.0 - Added strict option for disorder method selection. Added minorder=X. # 1.2.0 - Added saving and loading scores to IUScoreDir/.
© 2015 RJ Edwards. Contact: email@example.com.