Module: rje_kat Description: KAT wrapper and parser Version: 0.1.0 Last Edit: 27/09/21

Copyright © 2021 Richard J. Edwards - See source code for GNU License Notice

Imported modules: rje rje_db rje_obj

See SLiMSuite Blog for further documentation. See rje for general commands.

Function

This module has no standalone functions. The KAT object is designed to be inherited by other RJE program objects.

Commandline

Main KAT wrapper run options

seqin=FILE : Input sequence assembly [None]
basefile=FILE : Root of output file names [$SEQIN basefile]
kmerreads=FILELIST : File of high quality reads for KAT kmer analysis []
10xtrim=T/F : Whether to trim 16bp 10x barcodes from Read 1 of Kmer Reads data for KAT analysis [False]

History Module Version History

    # 0.0.0 - Initial Compilation.
    # 0.1.0 - Fixed _setKatAttributes bug.