Module: RJE_OMIM Description: OMIM Parsing module Version: 0.1 Last Edit: 13/08/07

Copyright © 2007 Richard J. Edwards - See source code for GNU License Notice

Imported modules: rje rje_sequence rje_zen

See SLiMSuite Blog for further documentation. See rje for general commands.

Function

This module is for parsing and storing OMIM gene/mutation data. In this capacitity it may be used by other modules. It also has a standalone capability specific to the OMIM-SLiMFinder grant application of Dr Richard Edwards. In this capacity, it should not be used without the permission of the author.

Commandline

omim=FILE : Input file (OMIM text download) ['omim.txt']
slimdir=PATH : Directory where *.occ.csv files can be found []

History Module Version History

    # 0.0 - Initial Compilation.
    # 0.1 - Incorporation of pingu and slimfinder etc. in standalone run mode.