Module: rje_rmd Description: R Markdown generation and execution module Version: 0.1.0 Last Edit: 01/02/21

Copyright © 2019 Richard J. Edwards - See source code for GNU License Notice

---

Imported modules: rje rje_obj

---

See SLiMSuite Blog for further documentation. See rje for general commands.

Function

The function of this module will be added here.

The R markdown itself is run using:

Rscript -e 'library(rmarkdown); rmarkdown::render("/path/to/test.Rmd", "html_document")'

NOTE: The "html_document" over-rules the content of the file itself, e.g. "pdf_document" can turn it into a PDF rather than HTML.

NOTE: Running the above generates a *.html file in the same place as the *.Rmd file (not the run directory).

NOTE: For HTML output, R must be installed and a pandoc environment variable must be set, e.g.

export RSTUDIO_PANDOC=/Applications/RStudio.app/Contents/MacOS/pandoc

Commandline

---

History Module Version History

    # 0.0.0 - Initial Compilation.
    # 0.1.0 - Added docHTML.