Module: scap Description: Sequence Composition Assessment of Peptides Version: 0.0 Last Edit: 05/01/09

Copyright © 2009 Richard J. Edwards - See source code for GNU License Notice

Imported modules: rje rje_markov rje_seq rje_zen

See SLiMSuite Blog for further documentation. See rje for general commands.

Function

The function of this module will be added here.

Commandline

seqin=FILE : File with input sequences for testing [None]
xmerback=FILE : File with sequences for background Markov Chain calculations (can be pickle) [seqin]
scapback=FILE : File with sequences for background SCAP calculations [None]
sorted=T/F : Whether to use sorted xmer fragments to reduce memory requirements [False]
[xmers=X,Y] : Deal with Xmers [upto Ymers] [1]

See also rje.py generic commandline options.

History Module Version History

    # 0.0 - Initial Compilation.