Module: SLiMPID Description: Short Linear Motif Protein Interaction Datasets Version: 0.0 Last Edit: 04/06/08

Copyright © 2008 Richard J. Edwards - See source code for GNU License Notice

Imported modules: rje rje_seq rje_uniprot rje_zen

See SLiMSuite Blog for further documentation. See rje for general commands.

Function

To be added.

Commandline

INPUT

*See RJE_SEQ and RJE_UNIPROT commandline options. Must have one or other loaded with sequences.*
domft=LIST : List of UniProt features to treat as Domains [PFAM,DOMAIN]
ppi=FILE : Pingu PPI File with Gene, EnsLoci & PPI headers []
ddi=FILE : iPFam domain-domain interaction file []
fam=FILE : File of GABLAM results for family-based methods []

History Module Version History

    # 0.0 - Initial Compilation.