Short Linear Motif analysis Suite
Copyright © 2014 Richard J. Edwards - See source code for GNU License Notice
SLiMSuite is designed to be a front end for the SLiMSuite set of sequence analysis tools. The relevant tool is given
by the first system command, or selected using
Help for the selected tool can be accessed using the
Running SLiMSuite should also try importing all the main SLiMSuite modules, testing for download errors etc.
The list of tools recognised by
Example use to run SLiMFinder
python SLiMSuitePATH/tools/slimsuite.py slimfinder
Please also see the SeqSuite documentation for additional utilities, which can be run from SLiMSuite or SeqSuite.
See also rje.py generic commandline options.
History Module Version History
# 0.0 - Initial Compilation based on SeqSuite. # 1.0 - Moved to tools/ for general release. Added reading and using of SeqSuite programs. # 1.1 - Added slimlist. # 1.2 - Added SLiMBench. # 1.3.0 - Added SLiMMaker and modified code to work with REST services. # 1.4.0 - Added RLC and Disorder progs to call SLiMCore. Added CompariMotif. # 1.5.0 - Added peptcluster and peptalign calls. # 1.5.1 - Changed disorder to iuscore to avoid module conflict. # 1.5.2 - Updated XRef REST call. # 1.6.0 - Removed SLiMCore as default. Default will now show help. # 1.7.0 - Updated to work with symbolic link in main slimsuite/ path. # 1.7.1 - Added error raising for protected REST alias data. # 1.8.0 - Added BUSCOMP and basic test function. # 1.8.1 - Updated documentation and added IUPred2. General tidy up and new example data for protocols paper.
© 2015 RJ Edwards. Contact: email@example.com.