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SLiMSuite SLiMMaker Server

# Output for SLiMMaker V1.6.1: Sun Dec  6 15:14:47 2015
# 0 warnings; 0 errors.
# JobID: 15120600004

Your SLiMMaker job has finished running and outputs have been parsed. Click on tabs to see server output. (Mouseover for description.)

The outfmt tab contains more information on the outputs. Click here for SLiMMaker help/documentation.

Content for individual tabs can be returned using &rest=X, where X is the tab name (e.g. &rest=log). Full output can be returned as text using &rest=full and parsed using SLiMParser:

python PATH/slimparser.py restin=JOBID restout=T [password=X] [restbase=X]

JobID 15120600004 (slimmaker) Finished.
IP:122.150.74.70
No queue.
slimmaker&peptides=LIG_CtBP_PxDLS_1&iterate=T&align=F&minfreq=0.67&minseq=2
Run Started: 2015-12-06 15:14:47; PID=21932
Run finished: 2015-12-06 15:14:47

Run with &rest=help for general options. Run with &rest=full to get full server output as text or &rest=format
for more user-friendly formatted output. Individual outputs can be identified/parsed using &rest=OUTFMT for:

slim = Short Linear Motif pattern returned
match = Number of input peptides matched by the SLiM
peptides = Original input peptides
aligned = aligned peptides
matches = Peptides matching the SLiM
unmatched = Peptides not matching the SLiM
iterate = SLiM/Peptide iterations. [&iterate=T]
P[EILMV][DN]L[ARST]
SLiM matches 14 of 19 input sequences (73.7%).
XPIDLRX
XPLNLSX
XPLDLSX
XPLNLTX
XPVDLSX
XPLDLSX
XPMDLSX
XPLSLVX
XPPDLSX
XPLDLSX
XPLNLSX
XPLDLSX
XPLNLSX
XPIDLSX
XPMDLRX
XPVDLTX
XPLSLTX
XPLSLVX
XPLDLSX
XPEDLSX
XGLDLSKX
XPLDLSX
XPMDLRX
XPIDLSX
XPIDLSX
XPIDLRX
XPLDLTX
XPLDLSX
XPLDLRX
XPEDLAX
XPLDLAX
XPVELRX
XGLDLSKX
XPEDL-AX
XPEDL-SX
XPIDL-RX
XPIDL-SX
XPLDL-AX
XPLDL-RX
XPLDL-SX
XPLDL-TX
XPLNL-SX
XPLNL-TX
XPLSL-TX
XPLSL-VX
XPMDL-RX
XPMDL-SX
XPPDL-SX
XPVDL-SX
XPVDL-TX
XPVEL-RX
XPEDL-AX
XPEDL-SX
XPIDL-RX
XPIDL-SX
XPLDL-AX
XPLDL-RX
XPLDL-SX
XPLDL-TX
XPLNL-SX
XPLNL-TX
XPMDL-RX
XPMDL-SX
XPVDL-SX
XPVDL-TX
XGLDLSKX
XPLSL-TX
XPLSL-VX
XPPDL-SX
XPVEL-RX
P[EILMV][DNS]L.{0,1}[ARST]: SLiM matches 15 of 19 sequences (78.9%).
-> XPEDL-AX,XPEDL-SX,XPIDL-RX,XPIDL-SX,XPLDL-AX,XPLDL-RX,XPLDL-SX,XPLDL-TX,XPLNL-SX,XPLNL-TX,XPLSL-TX,XPMDL-RX,XPMDL-SX,XPVDL-SX,XPVDL-TX
P[EILMV][DN]L[ARST]: SLiM matches 14 of 15 sequences (93.3%).
-> XPEDLAX,XPEDLSX,XPIDLRX,XPIDLSX,XPLDLAX,XPLDLRX,XPLDLSX,XPLDLTX,XPLNLSX,XPLNLTX,XPMDLRX,XPMDLSX,XPVDLSX,XPVDLTX
P[EILMV][DN]L[ARST]: SLiM matches 14 of 14 sequences (100.0%).
-> XPEDLAX,XPEDLSX,XPIDLRX,XPIDLSX,XPLDLAX,XPLDLRX,XPLDLSX,XPLDLTX,XPLNLSX,XPLNLTX,XPMDLRX,XPMDLSX,XPVDLSX,XPVDLTX

#~~# #~+~~+~# #~~#
#LOG 00:00:00 Activity Log for SLiMSuite V1.5.1: Sun Dec 6 15:14:47 2015
#DIR 00:00:00 Run from directory: /srv/slimsuite/logs/prod
#ARG 00:00:00 Commandline arguments: run ip=122.150.74.70 slimmaker&peptides=LIG_CtBP_PxDLS_1&iterate=T&align=F&minfreq=0.67&minseq=2&jobid=15120600004
#VIO 00:00:00 Verbosity: -1; Interactivity: -1.
#PROG 00:00:00 SLiMMaker V1.6.1: SLiM generator from aligned peptide sequences
#CMD 00:00:00 Full SLiMMaker CmdList: proglog=F iucut=0.2 usegopher=T protscores=T megablam=F orthdb=qfo_ref.2013-04.all.fas sourcedate=2014-05-28 walltime=0 runid=15120600004 rest=format peptides=LIG_CtBP_PxDLS_1.instances.txt iterate=T align=F minfreq=0.67 minseq=2 jobid=15120600004 resfile=slimmaker.csv savespace=0 targz=F megaslim=seqin basefile=slimmaker
#PEP 00:00:00 32 peptides read from 32 input peptides
#ALN 00:00:00 Unaligned peptides: aligning with PeptCluster
#AAPROP 00:00:00 Reading AA Properties from aaprop.txt... ...I L V C A G M F Y W H K R E Q D N S T P ...Hydrophobic ...Polar ...Small ...Proline ...Positive ...Negative ...Charged ...Tiny ...Aliphatic ...Aromatic ...Done!
#GAPX 00:00:00 PeptLen: 7; MaxLen: 8; Termini: True => 5 x 1 gap variants.
#VAR 00:00:00 32 peptides: 1 singletons; 18 with possible variants.
#PDIS 00:00:00 id distances: 90 => 0 variants.
#VAR 00:00:00 32 peptides tidied: 19 singletons; 0 with variants.
#SLIM 00:00:00 SLiM generated: "P[EILMV][DNS]L.{0,1}[ARST]"
#FREQ 00:00:00 SLiM matches 15 of 19 sequences (78.9%).
#PEP 00:00:00 15 peptides read from 15 input peptides
#SLIM 00:00:00 SLiM generated: "P[EILMV][DN]L[ARST]"
#FREQ 00:00:00 SLiM matches 14 of 15 sequences (93.3%).
#PEP 00:00:00 14 peptides read from 14 input peptides
#SLIM 00:00:00 SLiM generated: "P[EILMV][DN]L[ARST]"
#FREQ 00:00:00 SLiM matches 14 of 14 sequences (100.0%).
#FREQ 00:00:00 SLiM matches 14 of 19 input sequences (73.7%).
#LOG 00:00:00 SLiMMaker V1.6.1 End: Sun Dec 6 15:14:47 2015
#JOBID 00:00:00 15120600004
#REST 00:00:00 URL for future retrieval: http://rest.slimsuite.unsw.edu.au/retrieve&jobid=15120600004&rest=format&password=None
0 warning messages.

© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.