SLiMSuite REST Server


Links
REST Home
EdwardsLab Homepage
EdwardsLab Blog
SLiMSuite Blog
SLiMSuite
Webservers
REST Pages
REST Status
REST Help
REST Tools
REST Alias Data
REST API
REST News
REST Sitemap

SLiMSuite PINGU Server

# Output for PINGU V4.5.3: Wed Dec  9 00:51:04 2015
# 0 warnings; 0 errors.
# JobID: 15120900009

Click here for PINGU help/documentation. Click on tabs to see server output. (Mouseover for description.)

Content for individual tabs can be returned using &rest=X, where X is the tab name (e.g. &rest=log). Full output can be returned as text using &rest=full and parsed using SLiMParser.

JobID 15120900009 (pingu) Finished.
IP:129.94.133.155
No queue.
pingu&hublist=CTBP1,CTBP2&ppisource=intact
Run Started: 2015-12-09 00:51:04; PID=39412
Run finished: 2015-12-09 00:51:05

 Run with &rest=help for general options. Run with &rest=full to get full server output as text or &rest=format
for more user-friendly formatted output. Individual outputs can be identified/parsed using &rest=OUTFMT:

pairwise = main table of identified PPI for given `hublist=LIST` proteins. [tdt]
spokes = non-redundant list of "spoke" genes that interact with hubs [list]
uniprot = non-redundant list of uniprot accession numbers for proteins that interact with hubs [list]
sif-gene = simple interaction file (SIF) format of gene identifiers for PPI [sif]
sif-uni = simple interaction file (SIF) format of uniprot identifiers for PPI [sif]
Hub Spoke HubUni SpokeUni HubTaxID SpokeTaxID Evidence IType
CTBP1 BCAS3 Q13363 Q9H6U6 9606 9606 intact:two hybrid array|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP1 CEP68 Q13363 Q76N32 9606 9606 intact:two hybrid array|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP1 CHD3 Q13363 Q12873 9606 9606 intact:two hybrid physical association
CTBP1 CRY2 Q13363 Q49AN0 9606 9606 intact:two hybrid array|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP1 CTBP1 Q13363 Q13363 9606 9606 intact:two hybrid|intact:two hybrid array physical association
CTBP1 CTBP2 Q13363 P56545 9606 9606 intact:two hybrid|intact:two hybrid array|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP1 CTNNA1 Q13363 P35221 9606 9606 intact:two hybrid physical association
CTBP1 DMRTB1 Q13363 Q96MA1 9606 9606 intact:two hybrid array|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP1 FOXP2 Q13363 O15409 9606 9606 intact:two hybrid array|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP1 HDAC1 Q13363 Q13547 9606 9606 intact:anti tag coimmunoprecipitation association
CTBP1 HEMGN Q13363 Q9BXL5 9606 9606 intact:anti tag coimmunoprecipitation|intact:two hybrid array physical association
CTBP1 HIC1 Q13363 Q14526 9606 9606 intact:anti bait coimmunoprecipitation|intact:anti tag coimmunoprecipitation|intact:two hybrid physical association
CTBP1 HOXB5 Q13363 P09067 9606 9606 intact:two hybrid array|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP1 IKZF1 Q13363 Q13422 9606 9606 intact:two hybrid|intact:two hybrid array|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP1 KLF12 Q13363 Q9Y4X4 9606 9606 intact:two hybrid array|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP1 KLF4 Q13363 O43474 9606 9606 intact:anti bait coimmunoprecipitation|intact:anti tag coimmunoprecipitation physical association
CTBP1 LCORL Q13363 Q8N3X6 9606 9606 intact:two hybrid physical association
CTBP1 MAPK9 Q13363 P45984 9606 9606 intact:two hybrid array|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP1 MDM2 Q13363 Q00987 9606 9606 intact:pull down association
CTBP1 MYC Q13363 P01106 9606 9606 intact:tandem affinity purification association
CTBP1 NME2 Q13363 P22392 9606 9606 intact:two hybrid array physical association
CTBP1 NOL4 Q13363 O94818 9606 9606 intact:two hybrid array|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP1 NOL4L Q13363 Q96MY1 9606 9606 intact:two hybrid array|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP1 NRIP1 Q13363 P48552 9606 9606 intact:pull down direct interaction
CTBP1 ORC4 Q13363 O43929 9606 9606 intact:two hybrid physical association
CTBP1 PLCB1 Q13363 Q9NQ66 9606 9606 intact:two hybrid array|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP1 PRKAA1 Q13363 Q13131 9606 9606 intact:two hybrid array|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP1 RBBP5 Q13363 Q15291 9606 9606 intact:two hybrid physical association
CTBP1 RBBP8 Q13363 Q99708 9606 9606 intact:coimmunoprecipitation|intact:pull down|intact:two hybrid direct interaction|physical association
CTBP1 SOBP Q13363 A7XYQ1 9606 9606 intact:two hybrid physical association
CTBP1 TFAP2A Q13363 P05549 9606 9606 intact:two hybrid physical association
CTBP1 TGIF1 Q13363 Q15583 9606 9606 intact:coimmunoprecipitation|intact:two hybrid|intact:two hybrid array|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP1 THAP11 Q13363 Q96EK4 9606 9606 intact:anti tag coimmunoprecipitation|intact:two hybrid array physical association
CTBP1 TSHZ3 Q13363 Q63HK5 9606 9606 intact:two hybrid array|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP1 VDR Q13363 P11473 9606 9606 intact:chromatin immunoprecipitation assay association
CTBP1 ZEB1 Q13363 P37275 9606 9606 intact:coimmunoprecipitation physical association
CTBP1 ZNF219 Q13363 Q9P2Y4 9606 9606 intact:two hybrid physical association
CTBP1 ZNF366 Q13363 Q8N895 9606 9606 intact:anti bait coimmunoprecipitation|intact:anti tag coimmunoprecipitation|intact:pull down|intact:two hybrid direct interaction|physical association
CTBP2 ACTG1 P56545 P63261 9606 9606 intact:two hybrid array physical association
CTBP2 AKTIP P56545 Q9H8T0 9606 9606 intact:two hybrid pooling approach physical association
CTBP2 BAZ2B P56545 Q9UIF8 9606 9606 intact:two hybrid array|intact:two hybrid pooling approach|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP2 BCAS3 P56545 Q9H6U6 9606 9606 intact:two hybrid array|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP2 BCL3 P56545 P20749 9606 9606 intact:anti tag coimmunoprecipitation|intact:two hybrid physical association
CTBP2 C15ORF39 P56545 Q6ZRI6 9606 9606 intact:two hybrid physical association
CTBP2 CASP8AP2 P56545 Q9UKL3 9606 9606 intact:two hybrid physical association
CTBP2 CCNH P56545 P51946 9606 9606 intact:anti tag coimmunoprecipitation|intact:confocal microscopy|intact:pull down|intact:two hybrid|intact:two hybrid array colocalization|physical association
CTBP2 CCR5 P56545 P51681 9606 9606 intact:two hybrid array physical association
CTBP2 CTBP1 P56545 Q13363 9606 9606 intact:two hybrid|intact:two hybrid array|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP2 CTPS2 P56545 Q9NRF8 9606 9606 intact:two hybrid array physical association
CTBP2 DMRTB1 P56545 Q96MA1 9606 9606 intact:two hybrid array|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP2 DVL2 P56545 O14641 9606 9606 intact:two hybrid array physical association
CTBP2 DYRK1B P56545 Q9Y463 9606 9606 intact:tandem affinity purification association
CTBP2 FLI1 P56545 Q01543 9606 9606 intact:two hybrid array|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP2 FOXP2 P56545 O15409 9606 9606 intact:two hybrid array|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP2 FUNDC1 P56545 Q8IVP5 9606 9606 intact:two hybrid array|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP2 HIC1 P56545 Q14526 9606 9606 intact:anti bait coimmunoprecipitation|intact:two hybrid physical association
CTBP2 HOXB5 P56545 P09067 9606 9606 intact:two hybrid array|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP2 IKZF1 P56545 Q13422 9606 9606 intact:two hybrid|intact:two hybrid array|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP2 IKZF2 P56545 Q9UKS7 9606 9606 intact:two hybrid array|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP2 LCOR P56545 Q96JN0 9606 9606 intact:two hybrid array|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP2 NOL4 P56545 O94818 9606 9606 intact:two hybrid array|intact:two hybrid pooling approach|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP2 NOL4L P56545 Q96MY1 9606 9606 intact:two hybrid array|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP2 NRIP1 P56545 P48552 9606 9606 intact:two hybrid pooling approach physical association
CTBP2 PLCB1 P56545 Q9NQ66 9606 9606 intact:two hybrid array|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP2 PPP1R15A P56545 O75807 9606 9606 intact:anti tag coimmunoprecipitation|intact:two hybrid physical association
CTBP2 PROX1 P56545 Q92786 9606 9606 intact:anti tag coimmunoprecipitation|intact:two hybrid physical association
CTBP2 RAI2 P56545 Q9Y5P3 9606 9606 intact:two hybrid array|intact:two hybrid pooling approach|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP2 RBBP8 P56545 Q99708 9606 9606 intact:two hybrid physical association
CTBP2 RIMBP3 P56545 Q9UFD9 9606 9606 intact:two hybrid array|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP2 RPL17 P56545 P18621 9606 9606 intact:two hybrid array physical association
CTBP2 RPL7A P56545 P62424 9606 9606 intact:two hybrid array physical association
CTBP2 RPS28 P56545 P62857 9606 9606 intact:two hybrid array physical association
CTBP2 RPS29 P56545 P62273 9606 9606 intact:two hybrid array physical association
CTBP2 RPS4X P56545 P62701 9606 9606 intact:two hybrid array physical association
CTBP2 SOX13 P56545 Q9UN79 9606 9606 intact:anti tag coimmunoprecipitation|intact:two hybrid physical association
CTBP2 STX11 P56545 O75558 9606 9606 intact:two hybrid physical association
CTBP2 TEAD3 P56545 Q99594 9606 9606 intact:two hybrid pooling approach physical association
CTBP2 TGIF1 P56545 Q15583 9606 9606 intact:two hybrid|intact:two hybrid array|intact:two hybrid pooling approach|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP2 TSHZ3 P56545 Q63HK5 9606 9606 intact:two hybrid array|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP2 UBE2I P56545 P63279 9606 9606 intact:confocal microscopy|intact:two hybrid colocalization|physical association
CTBP2 XRCC6 P56545 P12956 9606 9606 intact:two hybrid physical association
CTBP2 ZBTB18 P56545 Q99592 9606 9606 intact:two hybrid array|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
CTBP2 ZFPM1 P56545 Q8IX07 9606 9606 intact:two hybrid physical association
CTBP2 ZNF512B P56545 Q96KM6 9606 9606 intact:two hybrid physical association
CTBP2 ZNF750 P56545 Q32MQ0 9606 9606 intact:two hybrid array|intact:two hybrid prey pooling approach|intact:validated two hybrid physical association
ACTG1
AKTIP
BAZ2B
BCAS3
BCL3
C15ORF39
CASP8AP2
CCNH
CCR5
CEP68
CHD3
CRY2
CTBP1
CTBP2
CTNNA1
CTPS2
DMRTB1
DVL2
DYRK1B
FLI1
FOXP2
FUNDC1
HDAC1
HEMGN
HIC1
HOXB5
IKZF1
IKZF2
KLF12
KLF4
LCOR
LCORL
MAPK9
MDM2
MYC
NME2
NOL4
NOL4L
NRIP1
ORC4
PLCB1
PPP1R15A
PRKAA1
PROX1
RAI2
RBBP5
RBBP8
RIMBP3
RPL17
RPL7A
RPS28
RPS29
RPS4X
SOBP
SOX13
STX11
TEAD3
TFAP2A
TGIF1
THAP11
TSHZ3
UBE2I
VDR
XRCC6
ZBTB18
ZEB1
ZFPM1
ZNF219
ZNF366
ZNF512B
ZNF750
A7XYQ1
O14641
O15409
O43474
O43929
O75558
O75807
O94818
P01106
P05549
P09067
P11473
P12956
P18621
P20749
P22392
P35221
P37275
P45984
P48552
P51681
P51946
P56545
P62273
P62424
P62701
P62857
P63261
P63279
Q00987
Q01543
Q12873
Q13131
Q13363
Q13422
Q13547
Q14526
Q15291
Q15583
Q32MQ0
Q49AN0
Q63HK5
Q6ZRI6
Q76N32
Q8IVP5
Q8IX07
Q8N3X6
Q8N895
Q92786
Q96EK4
Q96JN0
Q96KM6
Q96MA1
Q96MY1
Q99592
Q99594
Q99708
Q9BXL5
Q9H6U6
Q9H8T0
Q9NQ66
Q9NRF8
Q9P2Y4
Q9UFD9
Q9UIF8
Q9UKL3
Q9UKS7
Q9UN79
Q9Y463
Q9Y4X4
Q9Y5P3
CTBP1 pp BCAS3
CTBP1 pp CEP68
CTBP1 pp CHD3
CTBP1 pp CRY2
CTBP1 pp CTBP1
CTBP1 pp CTBP2
CTBP1 pp CTNNA1
CTBP1 pp DMRTB1
CTBP1 pp FOXP2
CTBP1 pp HDAC1
CTBP1 pp HEMGN
CTBP1 pp HIC1
CTBP1 pp HOXB5
CTBP1 pp IKZF1
CTBP1 pp KLF12
CTBP1 pp KLF4
CTBP1 pp LCORL
CTBP1 pp MAPK9
CTBP1 pp MDM2
CTBP1 pp MYC
CTBP1 pp NME2
CTBP1 pp NOL4
CTBP1 pp NOL4L
CTBP1 pp NRIP1
CTBP1 pp ORC4
CTBP1 pp PLCB1
CTBP1 pp PRKAA1
CTBP1 pp RBBP5
CTBP1 pp RBBP8
CTBP1 pp SOBP
CTBP1 pp TFAP2A
CTBP1 pp TGIF1
CTBP1 pp THAP11
CTBP1 pp TSHZ3
CTBP1 pp VDR
CTBP1 pp ZEB1
CTBP1 pp ZNF219
CTBP1 pp ZNF366
CTBP2 pp ACTG1
CTBP2 pp AKTIP
CTBP2 pp BAZ2B
CTBP2 pp BCAS3
CTBP2 pp BCL3
CTBP2 pp C15ORF39
CTBP2 pp CASP8AP2
CTBP2 pp CCNH
CTBP2 pp CCR5
CTBP2 pp CTBP1
CTBP2 pp CTPS2
CTBP2 pp DMRTB1
CTBP2 pp DVL2
CTBP2 pp DYRK1B
CTBP2 pp FLI1
CTBP2 pp FOXP2
CTBP2 pp FUNDC1
CTBP2 pp HIC1
CTBP2 pp HOXB5
CTBP2 pp IKZF1
CTBP2 pp IKZF2
CTBP2 pp LCOR
CTBP2 pp NOL4
CTBP2 pp NOL4L
CTBP2 pp NRIP1
CTBP2 pp PLCB1
CTBP2 pp PPP1R15A
CTBP2 pp PROX1
CTBP2 pp RAI2
CTBP2 pp RBBP8
CTBP2 pp RIMBP3
CTBP2 pp RPL17
CTBP2 pp RPL7A
CTBP2 pp RPS28
CTBP2 pp RPS29
CTBP2 pp RPS4X
CTBP2 pp SOX13
CTBP2 pp STX11
CTBP2 pp TEAD3
CTBP2 pp TGIF1
CTBP2 pp TSHZ3
CTBP2 pp UBE2I
CTBP2 pp XRCC6
CTBP2 pp ZBTB18
CTBP2 pp ZFPM1
CTBP2 pp ZNF512B
CTBP2 pp ZNF750
Q13363 pp Q9H6U6
Q13363 pp Q76N32
Q13363 pp Q12873
Q13363 pp Q49AN0
Q13363 pp Q13363
Q13363 pp P56545
Q13363 pp P35221
Q13363 pp Q96MA1
Q13363 pp O15409
Q13363 pp Q13547
Q13363 pp Q9BXL5
Q13363 pp Q14526
Q13363 pp P09067
Q13363 pp Q13422
Q13363 pp Q9Y4X4
Q13363 pp O43474
Q13363 pp Q8N3X6
Q13363 pp P45984
Q13363 pp Q00987
Q13363 pp P01106
Q13363 pp P22392
Q13363 pp O94818
Q13363 pp Q96MY1
Q13363 pp P48552
Q13363 pp O43929
Q13363 pp Q9NQ66
Q13363 pp Q13131
Q13363 pp Q15291
Q13363 pp Q99708
Q13363 pp A7XYQ1
Q13363 pp P05549
Q13363 pp Q15583
Q13363 pp Q96EK4
Q13363 pp Q63HK5
Q13363 pp P11473
Q13363 pp P37275
Q13363 pp Q9P2Y4
Q13363 pp Q8N895
P56545 pp P63261
P56545 pp Q9H8T0
P56545 pp Q9UIF8
P56545 pp Q9H6U6
P56545 pp P20749
P56545 pp Q6ZRI6
P56545 pp Q9UKL3
P56545 pp P51946
P56545 pp P51681
P56545 pp Q13363
P56545 pp Q9NRF8
P56545 pp Q96MA1
P56545 pp O14641
P56545 pp Q9Y463
P56545 pp Q01543
P56545 pp O15409
P56545 pp Q8IVP5
P56545 pp Q14526
P56545 pp P09067
P56545 pp Q13422
P56545 pp Q9UKS7
P56545 pp Q96JN0
P56545 pp O94818
P56545 pp Q96MY1
P56545 pp P48552
P56545 pp Q9NQ66
P56545 pp O75807
P56545 pp Q92786
P56545 pp Q9Y5P3
P56545 pp Q99708
P56545 pp Q9UFD9
P56545 pp P18621
P56545 pp P62424
P56545 pp P62857
P56545 pp P62273
P56545 pp P62701
P56545 pp Q9UN79
P56545 pp O75558
P56545 pp Q99594
P56545 pp Q15583
P56545 pp Q63HK5
P56545 pp P63279
P56545 pp P12956
P56545 pp Q99592
P56545 pp Q8IX07
P56545 pp Q96KM6
P56545 pp Q32MQ0
rest=format
hublist=CTBP1,CTBP2
ppisource=/srv/slimsuite/data/ppi/intact.pairwise.tdt
jobid=15120900009
basefile=pingu
#~~# #~+~~+~# #~~#
#LOG 00:00:00 Activity Log for SLiMSuite V1.5.2: Wed Dec 9 00:51:04 2015
#DIR 00:00:00 Run from directory: /srv/slimsuite/logs/prod
#ARG 00:00:00 Commandline arguments: run ip=129.94.133.155 pingu&hublist=CTBP1,CTBP2&ppisource=intact&jobid=15120900009
#VIO 00:00:00 Verbosity: -1; Interactivity: -1.
#PROG 00:00:00 PINGU V4.5.3: Protein Interaction Network & GO Utility
#CMD 00:00:00 Full PINGU CmdList: proglog=F iucut=0.2 usegopher=T protscores=T megablam=F orthdb=qfo_ref.2015-04.Eukaryota.fas sourcedate=2015-04-15 walltime=0 maxgapx=3 rest=format hublist=CTBP1,CTBP2 ppisource=intact.pairwise.tdt jobid=15120900009 basefile=pingu
#~~# 00:00:00 # ~~~~~~~~~~~~~~~~~~~~~~~ SETUP SOURCE ~~~~~~~~~~~~~~~~~~~~~~~~~~~ #
#~~# 00:00:00 # ~~~~~~~~~~~~~~~~~~~~~~~ PARSE PAIRWISE PPI ~~~~~~~~~~~~~~~~~~~~~~~~~~~ #
#TABLE 00:00:00 Empty Table "pairwise" added: 8 fields; 0 entries.
#PPI 00:00:00 Reading 85 pairwise PPI for 2 hubs from /srv/slimsuite/data/ppi/intact.pairwise.tdt.
#~~# 00:00:00 # ~~~~~~~~~~~~~~~~~~~~~~~ SOURCE SUMMARY ~~~~~~~~~~~~~~~~~~~~~~~~~~~ #
#SOURCE 00:00:00 85 PPISource (/srv/slimsuite/data/ppi/intact.pairwise.tdt): Found
#INDEX 00:00:00 Indexed "Source" on "Status": 1 unique; 0 missing entries
#~~# 00:00:00 # ~~~~~~~~~~~~~~~~~~~~~~~ PPI FILTER ~~~~~~~~~~~~~~~~~~~~~~~~~~~ #
#~~# 00:00:00 # ~~~~~~~~~~~~~~~~~~~~~~~ REST OUTPUT ~~~~~~~~~~~~~~~~~~~~~~~~~~~ #
#INDEX 00:00:00 Indexed "pairwise" on "Spoke": 71 unique; 0 missing entries
#INDEX 00:00:00 Indexed "pairwise" on "SpokeUni": 71 unique; 0 missing entries
#LOG 00:00:00 PINGU V4.5.3 End: Wed Dec 9 00:51:05 2015
#JOBID 00:00:00 15120900009
#REST 00:00:00 URL for future retrieval: http://rest.slimsuite.unsw.edu.au/retrieve&jobid=15120900009&rest=format&password=None
#SAVE 00:00:00 Table "pairwise" saved to "/srv/slimsuite/scratch/prod/pingu/15120900009/pingu.pairwise.tdt": 85 entries.
0 warning messages.

© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.