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SLiMSuite Documentation
Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.
cmd: compmask
Option Type: [X,Y]{docs:X,Y}
Modules: qslimfinder_V1.9 slimfinder_V4.9 slimprob_V1.4 rje_slimcore qslimfinder slimfinder slimprob slimsearch
| Module | Option | Description | Default |
|---|---|---|---|
| qslimfinder | compmask=X,Y |
Mask low complexity regions (same AA in X+ of Y consecutive aas) | 5,8 |
| qslimfinder_V1.9 | compmask=X,Y |
Mask low complexity regions (same AA in X+ of Y consecutive aas) | 5,8 |
| rje_slimcore | compmask=X,Y |
Mask low complexity regions (same AA in X+ of Y consecutive aas) | 5,8 |
| slimfinder | compmask=X,Y |
Mask low complexity regions (same AA in X+ of Y consecutive aas) | 5,8 |
| slimfinder_V4.9 | compmask=X,Y |
Mask low complexity regions (same AA in X+ of Y consecutive aas) | 5,8 |
| slimprob | compmask=X,Y |
Mask low complexity regions (same AA in X+ of Y consecutive aas) | None |
| slimprob_V1.4 | compmask=X,Y |
Mask low complexity regions (same AA in X+ of Y consecutive aas) | 5,8 |
| slimsearch | compmask=X,Y |
Mask low complexity regions (same AA in X+ of Y consecutive aas) | 5,8 |
© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.