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SLiMSuite Documentation
Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.
cmd: gopher
Option Type: [?]{docs:?} T/F
Modules: rje_yeast slim_pickings gopher_V2 rje_motiflist rje_slimlist gopher presto_V5
| Module | Option | Description | Default |
|---|---|---|---|
| gopher | [gopher=?]{docs:?} |
? |
|
| gopher_V2 | [gopher=?]{docs:?} |
? |
|
| presto_V5 | gopher=T/F |
Use GOPHER to generate missing orthologue alignments in alndir - see gopher.py options | False |
| rje_motiflist | gopher=T/F |
Use GOPHER to generate missing orthologue alignments in alndir - see gopher.py options | False |
| rje_slimlist | gopher=T/F |
Use GOPHER to generate missing orthologue alignments in alndir - see gopher.py options | False |
| rje_yeast | gopher=T/F |
Whether to feed Pillars into GOPHER Orthology (at BLAST ID stage) | False |
| slim_pickings | gopher=T/F |
Use GOPHER to generate missing orthologue alignments in alndir - see gopher.py options | False |
© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.