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SLiMSuite Documentation

Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.

cmd: gopher

Option Type: [?]{docs:?} T/F

Modules: rje_yeast slim_pickings gopher_V2 rje_motiflist rje_slimlist gopher presto_V5


ModuleOptionDescriptionDefault
gopher [gopher=?]{docs:?} ?
gopher_V2 [gopher=?]{docs:?} ?
presto_V5 gopher=T/F Use GOPHER to generate missing orthologue alignments in alndir - see gopher.py options False
rje_motiflist gopher=T/F Use GOPHER to generate missing orthologue alignments in alndir - see gopher.py options False
rje_slimlist gopher=T/F Use GOPHER to generate missing orthologue alignments in alndir - see gopher.py options False
rje_yeast gopher=T/F Whether to feed Pillars into GOPHER Orthology (at BLAST ID stage) False
slim_pickings gopher=T/F Use GOPHER to generate missing orthologue alignments in alndir - see gopher.py options False

© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.