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SLiMSuite Documentation
Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.
cmd: pairwise
Option Type: [?]{docs:?} FILE
Modules: humsf09 pirater rje_hivqsf slimfrap slimjim rje_ppi happi pingu_V3
| Module | Option | Description | Default |
|---|---|---|---|
| happi | pairwise=FILE |
Pairwise protein-protein interation (PPI) file | |
| humsf09 | pairwise=FILE |
Pingu Pairwise PPI file | None |
| pingu_V3 | pairwise=FILE |
Load interaction data from existing Pingu Pairwise file | None |
| pirater | [pairwise=?]{docs:?} |
? |
|
| rje_hivqsf | [pairwise=?]{docs:?} |
? |
|
| rje_ppi | pairwise=FILE |
Input PPI pairwise file, containing Hub, Spoke and optional Evidence columns | |
| slimfrap | pairwise=FILE |
Pingu Pairwise PPI file | None |
| slimjim | pairwise=FILE |
Pingu Pairwise output file | |
© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.