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SLiMSuite Documentation
Please note that command documentation sometimes lags behind the latest module versions. Click on module names to check current documentation.
cmd: resdir
Option Type: [?]{docs:?} PATH
Modules: bob extatic humsf09 orcfinder rje_paml slimfrap slimjim qslimfinder_V1.9 slimfinder_V4.9 slimprob_V1.4 rje_slimcore haqesac pingu_V3 pingu_V4 qslimfinder slimfarmer slimfinder slimmutant slimprob slimsearch
| Module | Option | Description | Default |
|---|---|---|---|
| bob | resdir=PATH |
Path to SLiMFinder results directory | |
| extatic | resdir=PATH |
Path for results output | ./ |
| haqesac | resdir=PATH |
Output directory for d>0 outputs | ./HAQESAC/ |
| humsf09 | resdir=PATH |
Path to extra SLiMFinder results files (*.occ.csv) | |
| orcfinder | resdir=PATH |
Redirect individual output files to specified directory (and look for intermediates) | SLiMFinder/ |
| pingu_V3 | resdir=PATH |
Redirect output files to specified directory | ./ |
| pingu_V4 | resdir=PATH |
Redirect output files/directories to specified directory | ./ |
| qslimfinder | resdir=PATH |
Redirect individual output files to specified directory (and look for intermediates) | QSLiMFinder/ |
| qslimfinder_V1.9 | resdir=PATH |
Redirect individual output files to specified directory (and look for intermediates) | QSLiMFinder/ |
| rje_paml | resdir=PATH |
Directory for results output | 'PAML/' |
| rje_slimcore | resdir=PATH |
Redirect individual output files to specified directory (and look for intermediates) | SLiMFinder/ |
| slimfarmer | [resdir=?]{docs:?} |
? |
|
| slimfinder | resdir=PATH |
Redirect individual output files to specified directory (and look for intermediates) | SLiMFinder/ |
| slimfinder_V4.9 | resdir=PATH |
Redirect individual output files to specified directory (and look for intermediates) | SLiMFinder/ |
| slimfrap | resdir=PATH |
Path to extra SLiMFinder results files (*.occ.csv) | |
| slimjim | resdir=PATH |
Path to extra SLiMFinder results | |
| slimmutant | resdir=PATH |
Location of output files. SLiMProb resdir should be in slimini | SLiMMutant/ (and SLiMProb/) |
| slimprob | resdir=PATH |
Redirect individual output files to specified directory (and look for intermediates) | SLiMProb/ |
| slimprob_V1.4 | resdir=PATH |
Redirect individual output files to specified directory (and look for intermediates) | SLiMProb/ |
| slimsearch | resdir=PATH |
Redirect individual output files to specified directory (and look for intermediates) | SLiMSearch/ |
© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.