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humsf10 V0.2

Human SLiMFinder 2010 Analysis

Module: humsf10
Description: Human SLiMFinder 2010 Analysis
Version: 0.2
Last Edit: 25/05/11

Copyright © 2010 Richard J. Edwards - See source code for GNU License Notice


Imported modules: rje rje_db rje_go rje_ppi rje_slimhtml rje_zen


See SLiMSuite Blog for further documentation. See rje for general commands.

Function

This module is for specific analyses for the Human SLiMFinder data, in addition to the websites etc. It is designed as a one-off and not for general use.

Commandline

sigcut=X : Significance cut-off for analyses [0.01]
run=LIST : List of analyses to perform (go/slim/mcl) []

See also rje.py generic commandline options.

History Module Version History

    # 0.0 - Initial Compilation.
    # 0.1 - Add co-occurrence evidence.
    # 0.2 - Added MCL to MCODE conversion.

© 2015 RJ Edwards. Contact: richard.edwards@unsw.edu.au.